Wall clock time and date at job start Mon Mar 30 2020 06:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99856 * 2 1 4 4 H 1.48500 * 109.47027 * 270.00161 * 3 2 1 5 5 H 1.48503 * 109.47061 * 29.99891 * 3 2 1 6 6 H 1.48493 * 109.47138 * 149.99685 * 3 2 1 7 7 C 1.37877 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99938 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00038 * 179.97438 * 7 2 1 10 10 H 1.09007 * 110.67444 * 61.78298 * 9 7 2 11 11 C 1.54893 * 110.75896 * 298.55173 * 9 7 2 12 12 C 1.54264 * 104.19725 * 203.55670 * 11 9 7 13 13 C 1.53875 * 106.59988 * 23.61050 * 12 11 9 14 14 H 1.09003 * 110.03181 * 240.66731 * 13 12 11 15 15 N 1.46895 * 110.03498 * 119.28566 * 13 12 11 16 16 C 1.46897 * 111.00231 * 87.09344 * 15 13 12 17 17 H 1.08998 * 109.23232 * 325.51290 * 16 15 13 18 18 C 1.52867 * 109.26842 * 85.00059 * 16 15 13 19 19 C 1.53306 * 108.58960 * 175.15787 * 18 16 15 20 20 C 1.52881 * 108.57970 * 285.55564 * 19 18 16 21 21 C 1.52703 * 110.14965 * 54.52001 * 20 19 18 22 22 H 1.09009 * 115.38456 * 127.17466 * 21 20 19 23 23 C 1.53654 * 116.03450 * 269.79309 * 21 20 19 24 24 C 1.49176 * 60.26143 * 111.30274 * 23 21 20 25 25 H 1.09004 * 116.23614 * 106.63058 * 24 23 21 26 26 C 1.54265 * 106.63772 * 359.97136 * 13 12 11 27 27 H 0.96994 * 120.00601 * 0.02562 * 1 2 3 28 28 H 1.08994 * 110.48849 * 84.87776 * 11 9 7 29 29 H 1.09002 * 110.59764 * 322.29169 * 11 9 7 30 30 H 1.09001 * 110.03418 * 264.32180 * 12 11 9 31 31 H 1.09002 * 110.03119 * 142.89131 * 12 11 9 32 32 H 1.00904 * 110.99682 * 211.04641 * 15 13 12 33 33 H 1.08991 * 109.62247 * 55.42545 * 18 16 15 34 34 H 1.09005 * 109.61669 * 294.88637 * 18 16 15 35 35 H 1.08998 * 109.61887 * 45.28283 * 19 18 16 36 36 H 1.09003 * 109.61552 * 165.64680 * 19 18 16 37 37 H 1.08998 * 109.35146 * 174.73104 * 20 19 18 38 38 H 1.09005 * 109.35515 * 294.44887 * 20 19 18 39 39 H 1.08991 * 117.54171 * 219.06888 * 23 21 20 40 40 H 1.08999 * 117.53220 * 4.24269 * 23 21 20 41 41 H 1.08998 * 110.48477 * 95.09656 * 26 13 12 42 42 H 1.08999 * 110.48998 * 217.73736 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8967 -0.7112 0.8982 11 6 4.0600 -0.5026 -1.2730 12 6 5.4760 -1.0908 -1.4427 13 6 5.4789 -2.4467 -0.7152 14 1 6.2181 -2.4391 0.0858 15 7 5.7778 -3.5268 -1.6649 16 6 7.2272 -3.7253 -1.7973 17 1 7.7311 -2.7630 -1.7073 18 6 7.7127 -4.6550 -0.6853 19 6 9.2007 -4.9487 -0.9086 20 6 9.3344 -5.9258 -2.0768 21 6 8.6185 -5.3749 -3.3079 22 1 9.2183 -5.3318 -4.2171 23 6 7.1404 -5.7662 -3.4599 24 6 7.5041 -4.3510 -3.1598 25 1 7.3965 -3.6414 -3.9802 26 6 4.0651 -2.6357 -0.1277 27 1 -0.4851 0.8399 -0.0004 28 1 4.1101 0.5767 -1.1294 29 1 3.4408 -0.7432 -2.1371 30 1 6.2132 -0.4249 -0.9943 31 1 5.6963 -1.2342 -2.5006 32 1 5.3187 -4.3836 -1.3943 33 1 7.1476 -5.5865 -0.7142 34 1 7.5763 -4.1711 0.2819 35 1 9.7252 -4.0227 -1.1442 36 1 9.6257 -5.3909 -0.0075 37 1 10.3898 -6.0709 -2.3072 38 1 8.8901 -6.8821 -1.8005 39 1 6.7800 -5.9943 -4.4630 40 1 6.6866 -6.3434 -2.6544 41 1 3.4458 -3.2233 -0.8055 42 1 4.1192 -3.1124 0.8510 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393508903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:52 Heat of formation + Delta-G solvation = -13.864730 kcal Electronic energy + Delta-G solvation = -18743.511783 eV Core-core repulsion = 16108.033648 eV Total energy + Delta-G solvation = -2635.478134 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.92795 -39.16053 -35.69309 -34.24646 -33.65109 -30.53897 -29.91323 -27.86343 -25.40391 -24.85457 -23.40061 -21.81353 -21.17334 -20.65539 -19.34682 -18.70717 -17.35923 -16.86504 -16.72513 -15.88973 -15.53805 -15.04050 -14.82769 -14.57998 -14.29912 -14.09425 -14.03252 -13.74759 -13.16706 -12.85469 -12.76933 -12.42569 -12.24335 -12.12879 -11.95090 -11.76256 -11.59268 -11.51818 -11.46098 -11.28172 -11.15175 -11.01168 -10.80307 -10.68110 -10.48514 -9.16972 -8.28220 -6.30853 1.33318 1.35740 1.46801 2.35178 2.82359 3.07717 3.38451 3.71716 3.83863 3.91862 3.97780 4.07978 4.14952 4.23306 4.28940 4.35548 4.51946 4.60559 4.67794 4.70708 4.75633 4.80253 4.81691 4.95654 4.97000 5.05621 5.10548 5.10861 5.16759 5.22666 5.27975 5.30074 5.37860 5.40893 5.42393 5.45934 5.51347 5.67183 5.80694 6.31993 6.34642 6.57610 6.75513 7.34535 8.89112 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.046205 B = 0.004619 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.848048 B = 6060.836207 C = 6129.773331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.011 3.989 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.296 1.296 6 H -0.245 1.245 7 C -0.513 4.513 8 H 0.030 0.970 9 C 0.007 3.993 10 H 0.030 0.970 11 C -0.125 4.125 12 C -0.105 4.105 13 C 0.096 3.904 14 H 0.053 0.947 15 N -0.681 5.681 16 C 0.120 3.880 17 H 0.077 0.923 18 C -0.149 4.149 19 C -0.112 4.112 20 C -0.086 4.086 21 C -0.148 4.148 22 H 0.110 0.890 23 C -0.171 4.171 24 C -0.128 4.128 25 H 0.086 0.914 26 C -0.102 4.102 27 H 0.264 0.736 28 H 0.040 0.960 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.341 0.659 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.092 -9.765 -4.305 24.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.186 4.186 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.223 1.223 6 H -0.169 1.169 7 C -0.551 4.551 8 H 0.049 0.951 9 C -0.012 4.012 10 H 0.048 0.952 11 C -0.163 4.163 12 C -0.143 4.143 13 C -0.014 4.014 14 H 0.070 0.930 15 N -0.311 5.311 16 C 0.011 3.989 17 H 0.095 0.905 18 C -0.188 4.188 19 C -0.150 4.150 20 C -0.123 4.123 21 C -0.167 4.167 22 H 0.128 0.872 23 C -0.208 4.208 24 C -0.147 4.147 25 H 0.104 0.896 26 C -0.140 4.140 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.160 0.840 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 21.891 -9.254 -4.864 24.259 hybrid contribution -0.555 0.449 0.762 1.044 sum 21.336 -8.806 -4.102 23.443 Atomic orbital electron populations 1.70059 1.08262 1.27920 1.53275 1.25878 0.95374 1.03036 0.94295 0.85853 0.79214 0.78698 0.78956 1.19391 1.22340 1.16855 1.21349 0.91612 0.92761 1.49405 0.95146 1.20025 0.93122 0.94131 0.93892 0.95234 1.22617 0.96525 0.97898 0.99277 1.22149 0.95663 0.95474 1.00992 1.22040 0.95415 0.91722 0.92188 0.92956 1.60686 1.09382 1.09820 1.51262 1.21010 0.87565 0.97749 0.92582 0.90502 1.22317 0.97888 0.99890 0.98664 1.21508 0.95049 0.99908 0.98543 1.21040 1.00576 0.98005 0.92699 1.22332 0.90399 1.03401 1.00523 0.87212 1.22509 0.97926 0.97810 1.02583 1.21149 1.02696 0.92820 0.98032 0.89571 1.22357 0.94947 0.97395 0.99281 0.92667 0.94183 0.93595 0.91550 0.91058 0.84028 0.91808 0.92374 0.91714 0.91043 0.90317 0.91644 0.88957 0.89251 0.92736 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.19 13.96 21.45 0.30 -60.89 16 2 C 0.01 0.63 5.46 84.65 0.46 1.09 16 3 Si 0.95 45.88 24.46 68.60 1.68 47.56 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.24 -10.92 6.48 99.48 0.64 -10.28 16 7 C -0.51 -30.02 9.14 25.60 0.23 -29.79 16 8 H 0.03 1.97 8.03 -2.91 -0.02 1.94 16 9 C 0.01 0.35 2.29 -10.22 -0.02 0.33 16 10 H 0.03 1.39 7.37 -2.38 -0.02 1.37 16 11 C -0.13 -5.33 5.08 31.67 0.16 -5.17 16 12 C -0.10 -3.49 6.41 31.32 0.20 -3.29 16 13 C 0.10 2.99 3.02 45.64 0.14 3.13 16 14 H 0.05 1.50 7.20 -2.39 -0.02 1.48 16 15 N -0.68 -18.52 5.84 -466.93 -2.73 -21.25 16 16 C 0.12 2.66 2.47 44.69 0.11 2.77 16 17 H 0.08 1.78 7.72 -2.39 -0.02 1.76 16 18 C -0.15 -2.80 4.93 30.65 0.15 -2.65 16 19 C -0.11 -1.71 5.93 30.66 0.18 -1.53 16 20 C -0.09 -1.21 5.83 30.46 0.18 -1.03 16 21 C -0.15 -2.42 6.29 -10.98 -0.07 -2.49 16 22 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 23 C -0.17 -3.20 9.56 29.60 0.28 -2.92 16 24 C -0.13 -2.63 5.37 -12.50 -0.07 -2.70 16 25 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 26 C -0.10 -3.96 5.68 31.69 0.18 -3.78 16 27 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 28 H 0.04 1.69 4.90 -2.39 -0.01 1.68 16 29 H 0.05 2.12 8.05 -2.39 -0.02 2.10 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 2.30 7.92 -2.39 -0.02 2.28 16 32 H 0.34 9.08 8.01 -89.69 -0.72 8.37 16 33 H 0.06 1.22 7.01 -2.39 -0.02 1.20 16 34 H 0.06 1.16 7.52 -2.38 -0.02 1.14 16 35 H 0.06 1.00 8.04 -2.39 -0.02 0.98 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 0.91 8.05 -2.38 -0.02 0.89 16 39 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.09 1.69 7.26 -2.39 -0.02 1.68 16 41 H 0.05 2.27 7.87 -2.39 -0.02 2.26 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -64.56 312.67 1.57 -62.99 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.20 Total: 19.61 kcal Atomic # 6 Polarization: -50.14 SS G_CDS: 2.12 Total: -48.02 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -2.43 Total: -82.14 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.68 Total: 47.56 kcal Total: -64.56 1.57 -62.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393508903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.129 kcal (2) G-P(sol) polarization free energy of solvation -64.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds