Wall clock time and date at job start Mon Mar 30 2020 06:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00239 * 2 1 4 4 H 1.48499 * 109.47173 * 239.99807 * 3 2 1 5 5 H 1.48493 * 109.47028 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47123 * 119.99937 * 3 2 1 7 7 C 1.37881 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99417 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00260 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.43227 * 57.46054 * 9 7 2 11 11 C 1.54269 * 110.59891 * 294.84363 * 9 7 2 12 12 C 1.54086 * 106.61888 * 217.54380 * 11 9 7 13 13 C 1.54269 * 106.49521 * 0.17205 * 12 11 9 14 14 H 1.09003 * 110.48722 * 264.70969 * 13 12 11 15 15 N 1.46893 * 110.48766 * 142.19513 * 13 12 11 16 16 C 1.46905 * 110.99575 * 88.24050 * 15 13 12 17 17 H 1.08997 * 112.91411 * 336.25480 * 16 15 13 18 18 C 1.53954 * 113.66487 * 107.55580 * 16 15 13 19 19 C 1.53777 * 87.11729 * 139.88744 * 18 16 15 20 20 C 1.53784 * 113.61111 * 204.99869 * 16 15 13 21 21 H 1.08998 * 113.61884 * 334.65224 * 20 16 15 22 22 C 1.53006 * 113.61359 * 105.47631 * 20 16 15 23 23 C 1.53000 * 117.49776 * 178.46911 * 22 20 16 24 24 C 1.52997 * 117.49537 * 247.09365 * 22 20 16 25 25 C 1.54885 * 110.48813 * 179.97438 * 9 7 2 26 26 H 0.97000 * 119.99406 * 0.02562 * 1 2 3 27 27 H 1.08998 * 110.03065 * 336.94067 * 11 9 7 28 28 H 1.08995 * 110.03184 * 98.31998 * 11 9 7 29 29 H 1.08999 * 110.15875 * 240.87731 * 12 11 9 30 30 H 1.08992 * 110.00777 * 119.38279 * 12 11 9 31 31 H 1.00893 * 111.00404 * 212.19736 * 15 13 12 32 32 H 1.09009 * 113.53888 * 25.33033 * 18 16 15 33 33 H 1.09000 * 113.66458 * 254.46162 * 18 16 15 34 34 H 1.08993 * 113.61914 * 220.09065 * 19 18 16 35 35 H 1.09003 * 113.69373 * 89.19215 * 19 18 16 36 36 H 1.09002 * 115.56020 * 32.77494 * 22 20 16 37 37 H 1.08990 * 117.49990 * 359.97438 * 23 22 20 38 38 H 1.09004 * 117.49237 * 214.97568 * 23 22 20 39 39 H 1.08999 * 117.49685 * 145.02116 * 24 22 20 40 40 H 1.08999 * 117.52022 * 359.97438 * 24 22 20 41 41 H 1.08997 * 110.75497 * 38.44164 * 25 9 7 42 42 H 1.08999 * 110.75776 * 275.06912 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.5852 -2.5542 -0.8608 11 6 0.4537 -2.6656 1.3107 12 6 0.5350 -4.1569 1.6896 13 6 1.3828 -4.8408 0.5973 14 1 0.7401 -5.2756 -0.1682 15 7 2.2470 -5.8717 1.1875 16 6 1.5534 -7.1650 1.2543 17 1 0.4681 -7.0645 1.2620 18 6 2.0700 -8.1967 0.2351 19 6 1.9284 -9.2501 1.3464 20 6 2.0935 -8.0976 2.3513 21 1 3.1307 -7.8992 2.6215 22 6 1.1733 -8.2094 3.5686 23 6 1.6082 -9.1436 4.6995 24 6 1.6771 -7.6271 4.8907 25 6 2.2364 -3.6941 0.0005 26 1 -0.4849 0.8401 -0.0004 27 1 0.8961 -2.0543 2.0972 28 1 -0.5858 -2.3773 1.1543 29 1 -0.4637 -4.5930 1.7149 30 1 1.0165 -4.2691 2.6610 31 1 3.1139 -5.9522 0.6775 32 1 3.1009 -8.0243 -0.0745 33 1 1.3955 -8.3562 -0.6062 34 1 2.7452 -9.9713 1.3712 35 1 0.9462 -9.7216 1.3804 36 1 0.1061 -8.1344 3.3599 37 1 2.5495 -9.6790 4.5761 38 1 0.8269 -9.6834 5.2348 39 1 0.9413 -7.1693 5.5518 40 1 2.6642 -7.1648 4.8938 41 1 3.0981 -3.4842 0.6342 42 1 2.5517 -3.9348 -1.0147 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393527518.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:06 Heat of formation + Delta-G solvation = 22.154534 kcal Electronic energy + Delta-G solvation = -18400.615962 eV Core-core repulsion = 15766.699740 eV Total energy + Delta-G solvation = -2633.916222 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.63898 -37.32808 -35.99110 -33.09175 -31.37689 -28.01293 -26.56983 -26.16186 -23.94906 -23.16340 -22.22224 -20.83969 -19.93973 -19.00524 -18.79594 -16.31924 -15.95276 -15.49674 -14.92929 -14.56499 -14.50579 -13.93396 -13.31682 -12.95679 -12.61861 -12.41229 -12.25925 -11.95237 -11.74273 -11.54831 -11.29359 -10.98331 -10.85832 -10.70807 -10.57945 -10.46942 -10.32696 -10.09190 -9.95391 -9.79132 -9.62877 -9.45055 -8.99747 -8.65878 -8.31072 -7.92101 -5.94569 -3.96750 3.36006 3.40461 3.43177 3.78021 4.37563 4.49931 4.62789 4.69688 4.81556 4.97352 5.05863 5.10344 5.25424 5.37484 5.49444 5.61290 5.61695 5.65190 5.75784 5.80081 5.81630 5.88661 5.95234 6.05062 6.10842 6.16762 6.25429 6.37000 6.52096 6.63452 6.74365 6.86838 6.93397 7.06657 7.27958 7.43659 7.65128 7.76379 7.84067 7.99010 8.09735 8.53978 9.06067 9.66733 11.15382 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.036165 B = 0.004366 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.035673 B = 6411.803339 C = 6746.669579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.051 3.949 10 H 0.027 0.973 11 C -0.096 4.096 12 C -0.112 4.112 13 C 0.081 3.919 14 H 0.037 0.963 15 N -0.671 5.671 16 C 0.079 3.921 17 H 0.093 0.907 18 C -0.173 4.173 19 C -0.133 4.133 20 C -0.068 4.068 21 H 0.090 0.910 22 C -0.133 4.133 23 C -0.186 4.186 24 C -0.173 4.173 25 C -0.116 4.116 26 H 0.259 0.741 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.060 0.940 31 H 0.337 0.663 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.447 -17.539 4.718 18.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.032 3.968 10 H 0.046 0.954 11 C -0.135 4.135 12 C -0.151 4.151 13 C -0.028 4.028 14 H 0.055 0.945 15 N -0.300 5.300 16 C -0.032 4.032 17 H 0.111 0.889 18 C -0.212 4.212 19 C -0.170 4.170 20 C -0.087 4.087 21 H 0.109 0.891 22 C -0.152 4.152 23 C -0.223 4.223 24 C -0.210 4.210 25 C -0.154 4.154 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.156 0.844 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.130 -17.211 5.366 18.153 hybrid contribution 0.356 0.672 -0.879 1.163 sum 2.486 -16.538 4.487 17.316 Atomic orbital electron populations 1.69965 1.05877 1.26425 1.50668 1.24980 0.94813 0.98944 0.95231 0.86724 0.79640 0.83440 0.78561 1.20381 1.21403 1.20296 1.21131 0.92726 0.90586 1.50603 0.92783 1.19371 0.92343 0.91372 0.93693 0.95436 1.22101 1.00512 0.91209 0.99670 1.22286 0.96915 0.97652 0.98229 1.22503 0.94304 0.91276 0.94761 0.94470 1.60510 1.06835 1.05028 1.57610 1.23123 0.98292 0.87599 0.94170 0.88919 1.23676 1.01545 0.98355 0.97630 1.22745 1.01770 0.96220 0.96313 1.22310 0.98891 0.95289 0.92230 0.89127 1.22181 0.99250 1.04077 0.89650 1.22897 1.02845 0.93210 1.03331 1.22901 1.02970 0.95253 0.99868 1.22748 0.99154 0.95628 0.97909 0.93125 0.93115 0.93127 0.94441 0.92141 0.84427 0.90145 0.91736 0.91718 0.90294 0.88285 0.89195 0.89351 0.89180 0.88711 0.91749 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 12.63 55.43 0.70 -25.36 16 2 C 0.06 1.74 5.35 -17.82 -0.10 1.65 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.27 8.37 -34.44 -0.29 -14.56 16 8 H 0.05 1.48 7.77 -52.48 -0.41 1.08 16 9 C 0.05 1.29 2.72 -90.12 -0.24 1.05 16 10 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 11 C -0.10 -2.31 5.61 -25.50 -0.14 -2.45 16 12 C -0.11 -2.22 6.53 -25.50 -0.17 -2.38 16 13 C 0.08 1.45 3.02 -66.04 -0.20 1.26 16 14 H 0.04 0.67 7.87 -51.93 -0.41 0.27 16 15 N -0.67 -10.16 6.42 -97.05 -0.62 -10.78 16 16 C 0.08 1.02 3.58 -66.80 -0.24 0.78 16 17 H 0.09 1.28 7.80 -51.93 -0.41 0.87 16 18 C -0.17 -1.88 7.70 -25.83 -0.20 -2.07 16 19 C -0.13 -1.30 7.65 -25.92 -0.20 -1.50 16 20 C -0.07 -0.76 3.61 -89.80 -0.32 -1.09 16 21 H 0.09 1.08 8.12 -51.93 -0.42 0.65 16 22 C -0.13 -1.47 5.42 -90.62 -0.49 -1.96 16 23 C -0.19 -1.79 10.25 -26.73 -0.27 -2.06 16 24 C -0.17 -1.91 10.24 -26.73 -0.27 -2.18 16 25 C -0.12 -2.42 5.68 -24.73 -0.14 -2.56 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.05 1.30 7.83 -51.93 -0.41 0.89 16 28 H 0.05 1.28 8.06 -51.93 -0.42 0.87 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.19 8.04 -51.93 -0.42 0.77 16 31 H 0.34 4.79 7.91 -39.30 -0.31 4.48 16 32 H 0.08 0.85 7.83 -51.92 -0.41 0.44 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.10 1.11 8.13 -51.93 -0.42 0.69 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.37 8.05 -51.93 -0.42 0.95 16 42 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -28.16 332.71 -11.01 -39.17 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.80 Total: 3.48 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -3.28 Total: -28.10 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.08 Total: -36.14 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.16 -11.01 -39.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393527518.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.329 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds