Wall clock time and date at job start Mon Mar 30 2020 06:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00239 * 2 1 4 4 H 1.48499 * 109.47173 * 239.99807 * 3 2 1 5 5 H 1.48493 * 109.47028 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47123 * 119.99937 * 3 2 1 7 7 C 1.37881 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99417 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00260 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.43227 * 57.46054 * 9 7 2 11 11 C 1.54269 * 110.59891 * 294.84363 * 9 7 2 12 12 C 1.54086 * 106.61888 * 217.54380 * 11 9 7 13 13 C 1.54269 * 106.49521 * 0.17205 * 12 11 9 14 14 H 1.09003 * 110.48722 * 264.70969 * 13 12 11 15 15 N 1.46893 * 110.48766 * 142.19513 * 13 12 11 16 16 C 1.46905 * 110.99575 * 88.24050 * 15 13 12 17 17 H 1.08997 * 112.91411 * 336.25480 * 16 15 13 18 18 C 1.53954 * 113.66487 * 107.55580 * 16 15 13 19 19 C 1.53777 * 87.11729 * 139.88744 * 18 16 15 20 20 C 1.53784 * 113.61111 * 204.99869 * 16 15 13 21 21 H 1.08998 * 113.61884 * 334.65224 * 20 16 15 22 22 C 1.53006 * 113.61359 * 105.47631 * 20 16 15 23 23 C 1.53000 * 117.49776 * 178.46911 * 22 20 16 24 24 C 1.52997 * 117.49537 * 247.09365 * 22 20 16 25 25 C 1.54885 * 110.48813 * 179.97438 * 9 7 2 26 26 H 0.97000 * 119.99406 * 0.02562 * 1 2 3 27 27 H 1.08998 * 110.03065 * 336.94067 * 11 9 7 28 28 H 1.08995 * 110.03184 * 98.31998 * 11 9 7 29 29 H 1.08999 * 110.15875 * 240.87731 * 12 11 9 30 30 H 1.08992 * 110.00777 * 119.38279 * 12 11 9 31 31 H 1.00893 * 111.00404 * 212.19736 * 15 13 12 32 32 H 1.09009 * 113.53888 * 25.33033 * 18 16 15 33 33 H 1.09000 * 113.66458 * 254.46162 * 18 16 15 34 34 H 1.08993 * 113.61914 * 220.09065 * 19 18 16 35 35 H 1.09003 * 113.69373 * 89.19215 * 19 18 16 36 36 H 1.09002 * 115.56020 * 32.77494 * 22 20 16 37 37 H 1.08990 * 117.49990 * 359.97438 * 23 22 20 38 38 H 1.09004 * 117.49237 * 214.97568 * 23 22 20 39 39 H 1.08999 * 117.49685 * 145.02116 * 24 22 20 40 40 H 1.08999 * 117.52022 * 359.97438 * 24 22 20 41 41 H 1.08997 * 110.75497 * 38.44164 * 25 9 7 42 42 H 1.08999 * 110.75776 * 275.06912 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.5852 -2.5542 -0.8608 11 6 0.4537 -2.6656 1.3107 12 6 0.5350 -4.1569 1.6896 13 6 1.3828 -4.8408 0.5973 14 1 0.7401 -5.2756 -0.1682 15 7 2.2470 -5.8717 1.1875 16 6 1.5534 -7.1650 1.2543 17 1 0.4681 -7.0645 1.2620 18 6 2.0700 -8.1967 0.2351 19 6 1.9284 -9.2501 1.3464 20 6 2.0935 -8.0976 2.3513 21 1 3.1307 -7.8992 2.6215 22 6 1.1733 -8.2094 3.5686 23 6 1.6082 -9.1436 4.6995 24 6 1.6771 -7.6271 4.8907 25 6 2.2364 -3.6941 0.0005 26 1 -0.4849 0.8401 -0.0004 27 1 0.8961 -2.0543 2.0972 28 1 -0.5858 -2.3773 1.1543 29 1 -0.4637 -4.5930 1.7149 30 1 1.0165 -4.2691 2.6610 31 1 3.1139 -5.9522 0.6775 32 1 3.1009 -8.0243 -0.0745 33 1 1.3955 -8.3562 -0.6062 34 1 2.7452 -9.9713 1.3712 35 1 0.9462 -9.7216 1.3804 36 1 0.1061 -8.1344 3.3599 37 1 2.5495 -9.6790 4.5761 38 1 0.8269 -9.6834 5.2348 39 1 0.9413 -7.1693 5.5518 40 1 2.6642 -7.1648 4.8938 41 1 3.0981 -3.4842 0.6342 42 1 2.5517 -3.9348 -1.0147 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393527518.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:06 Heat of formation + Delta-G solvation = 7.936591 kcal Electronic energy + Delta-G solvation = -18401.232499 eV Core-core repulsion = 15766.699740 eV Total energy + Delta-G solvation = -2634.532758 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.61711 -38.88496 -36.96392 -34.89978 -33.04486 -29.87059 -28.23116 -27.01548 -25.71469 -24.40863 -23.02913 -21.73436 -21.37083 -20.59149 -20.19766 -18.30268 -16.92353 -16.83773 -16.55659 -16.23788 -15.64278 -15.25842 -14.53900 -14.14142 -14.08714 -13.84187 -13.72607 -13.29892 -13.01238 -12.76987 -12.75059 -12.48716 -12.33819 -12.23902 -12.02452 -11.67482 -11.63546 -11.60226 -11.39343 -11.31963 -10.99444 -10.74324 -10.73262 -10.48214 -10.45395 -9.13673 -8.10950 -6.20497 1.41479 1.43215 1.50696 2.44385 2.95671 3.19980 3.27808 3.74169 3.82978 3.90539 4.00875 4.04824 4.17923 4.23965 4.25281 4.36939 4.41034 4.63684 4.67182 4.78609 4.85978 4.90667 4.93704 4.98213 5.01386 5.11562 5.12443 5.13782 5.17474 5.26032 5.30561 5.33953 5.39476 5.46229 5.50989 5.66067 5.67835 5.92096 5.99738 6.34163 6.42665 6.63183 6.90931 7.46780 8.98348 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.036165 B = 0.004366 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.035673 B = 6411.803339 C = 6746.669579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.040 3.960 10 H -0.003 1.003 11 C -0.087 4.087 12 C -0.101 4.101 13 C 0.097 3.903 14 H 0.041 0.959 15 N -0.672 5.672 16 C 0.068 3.932 17 H 0.084 0.916 18 C -0.167 4.167 19 C -0.120 4.120 20 C -0.063 4.063 21 H 0.086 0.914 22 C -0.144 4.144 23 C -0.167 4.167 24 C -0.188 4.188 25 C -0.105 4.105 26 H 0.259 0.741 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.344 0.656 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.516 -19.214 4.958 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.021 3.979 10 H 0.015 0.985 11 C -0.126 4.126 12 C -0.139 4.139 13 C -0.012 4.012 14 H 0.059 0.941 15 N -0.302 5.302 16 C -0.042 4.042 17 H 0.102 0.898 18 C -0.206 4.206 19 C -0.158 4.158 20 C -0.082 4.082 21 H 0.104 0.896 22 C -0.162 4.162 23 C -0.204 4.204 24 C -0.225 4.225 25 C -0.143 4.143 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.164 0.836 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.214 -18.908 5.606 19.982 hybrid contribution 0.003 1.192 -0.949 1.524 sum 3.217 -17.716 4.657 18.598 Atomic orbital electron populations 1.70098 1.07330 1.27202 1.51509 1.25789 0.95654 1.02504 0.94885 0.85687 0.78427 0.79109 0.78903 1.19471 1.21051 1.19637 1.21527 0.92973 0.92065 1.50449 0.92824 1.19379 0.92991 0.92623 0.92917 0.98470 1.21899 0.98372 0.93933 0.98373 1.22144 0.98262 0.94675 0.98849 1.22184 0.93863 0.91253 0.93934 0.94146 1.60441 1.06793 1.05645 1.57279 1.23258 0.97764 0.86881 0.96332 0.89830 1.23635 1.01760 0.97677 0.97549 1.22698 1.02715 0.95796 0.94626 1.22242 0.98448 0.95339 0.92157 0.89580 1.22208 0.99070 1.05176 0.89762 1.22951 1.03436 0.92277 1.01753 1.22926 1.02621 0.96708 1.00224 1.22564 0.98169 0.94769 0.98799 0.93171 0.95561 0.95621 0.93088 0.91884 0.83583 0.89566 0.91539 0.90295 0.89632 0.88612 0.88327 0.88164 0.89306 0.89443 0.92141 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.30 12.63 21.45 0.27 -55.03 16 2 C 0.01 0.58 5.35 84.66 0.45 1.03 16 3 Si 0.95 44.63 29.54 68.60 2.03 46.65 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.53 -30.18 8.37 25.60 0.21 -29.96 16 8 H 0.05 2.97 7.77 -2.91 -0.02 2.94 16 9 C 0.04 2.06 2.72 -10.47 -0.03 2.03 16 10 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 11 C -0.09 -4.30 5.61 31.39 0.18 -4.12 16 12 C -0.10 -3.95 6.53 31.39 0.20 -3.75 16 13 C 0.10 3.42 3.02 46.00 0.14 3.56 16 14 H 0.04 1.41 7.87 -2.39 -0.02 1.40 16 15 N -0.67 -19.22 6.42 -460.95 -2.96 -22.18 16 16 C 0.07 1.61 3.58 45.50 0.16 1.77 16 17 H 0.08 2.16 7.80 -2.39 -0.02 2.14 16 18 C -0.17 -3.19 7.70 31.18 0.24 -2.95 16 19 C -0.12 -1.99 7.65 31.12 0.24 -1.75 16 20 C -0.06 -1.27 3.61 -10.26 -0.04 -1.30 16 21 H 0.09 1.85 8.12 -2.39 -0.02 1.83 16 22 C -0.14 -2.91 5.42 -10.79 -0.06 -2.97 16 23 C -0.17 -2.82 10.25 30.60 0.31 -2.50 16 24 C -0.19 -3.90 10.24 30.60 0.31 -3.59 16 25 C -0.11 -4.33 5.68 31.89 0.18 -4.15 16 26 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 27 H 0.03 1.37 7.83 -2.39 -0.02 1.35 16 28 H 0.02 1.34 8.06 -2.39 -0.02 1.32 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 2.44 8.04 -2.39 -0.02 2.42 16 31 H 0.34 9.09 7.91 -89.70 -0.71 8.38 16 32 H 0.09 1.56 7.83 -2.38 -0.02 1.55 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.33 8.10 -2.39 -0.02 1.31 16 36 H 0.10 2.00 8.13 -2.39 -0.02 1.98 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 2.53 8.05 -2.39 -0.02 2.51 16 42 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -60.94 332.71 2.10 -58.84 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.25 Total: 20.36 kcal Atomic # 6 Polarization: -51.15 SS G_CDS: 2.51 Total: -48.64 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -2.69 Total: -77.21 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -60.94 2.10 -58.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393527518.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.772 kcal (2) G-P(sol) polarization free energy of solvation -60.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds