Wall clock time and date at job start Mon Mar 30 2020 06:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99781 * 2 1 4 4 H 1.48492 * 109.47295 * 85.15470 * 3 2 1 5 5 H 1.48500 * 109.47065 * 205.15631 * 3 2 1 6 6 H 1.48505 * 109.47181 * 325.15044 * 3 2 1 7 7 C 1.37872 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00031 * 173.46409 * 7 2 1 9 9 C 1.50700 * 120.00101 * 353.46796 * 7 2 1 10 10 H 1.09000 * 110.67501 * 55.90218 * 9 7 2 11 11 C 1.54891 * 110.75660 * 292.66539 * 9 7 2 12 12 C 1.54468 * 104.10272 * 203.89182 * 11 9 7 13 13 C 1.53876 * 106.68290 * 23.34946 * 12 11 9 14 14 H 1.09008 * 110.03131 * 240.87094 * 13 12 11 15 15 N 1.46896 * 110.07979 * 119.46170 * 13 12 11 16 16 C 1.46902 * 110.99854 * 87.80189 * 15 13 12 17 17 H 1.09000 * 112.84842 * 23.81024 * 16 15 13 18 18 C 1.53782 * 113.61665 * 252.50133 * 16 15 13 19 19 C 1.53781 * 87.08112 * 220.02149 * 18 16 15 20 20 C 1.53777 * 87.08191 * 25.43391 * 19 18 16 21 21 H 1.08997 * 113.61755 * 89.11652 * 20 19 18 22 22 C 1.53005 * 113.61401 * 220.02331 * 20 19 18 23 23 C 1.53010 * 117.49518 * 226.24178 * 22 20 19 24 24 C 1.53004 * 117.49937 * 157.58813 * 22 20 19 25 25 C 1.54271 * 106.60109 * 0.15193 * 13 12 11 26 26 H 0.96993 * 120.00077 * 0.02562 * 1 2 3 27 27 H 1.09000 * 110.48772 * 322.42088 * 11 9 7 28 28 H 1.09006 * 110.48348 * 85.06451 * 11 9 7 29 29 H 1.08992 * 109.86021 * 264.10604 * 12 11 9 30 30 H 1.09004 * 110.11869 * 142.72792 * 12 11 9 31 31 H 1.00893 * 111.00783 * 211.76195 * 15 13 12 32 32 H 1.09001 * 113.61576 * 334.56646 * 18 16 15 33 33 H 1.09003 * 113.61426 * 105.47307 * 18 16 15 34 34 H 1.08999 * 113.61483 * 270.88644 * 19 18 16 35 35 H 1.09002 * 113.69054 * 139.99525 * 19 18 16 36 36 H 1.08995 * 115.55399 * 11.90792 * 22 20 19 37 37 H 1.09003 * 117.49733 * 359.97438 * 23 22 20 38 38 H 1.09004 * 117.49617 * 145.01712 * 23 22 20 39 39 H 1.09004 * 117.49424 * 214.97858 * 24 22 20 40 40 H 1.09000 * 117.49889 * 359.97438 * 24 22 20 41 41 H 1.08993 * 110.48927 * 217.71877 * 25 13 12 42 42 H 1.08995 * 110.59728 * 95.12572 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3942 2.1055 1.3950 5 1 3.5941 1.4128 -0.5952 6 1 1.5015 2.6209 -0.8001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0793 -1.1970 -0.1070 9 6 1.2584 -2.4949 0.1473 10 1 0.4912 -2.5881 -0.6213 11 6 0.6365 -2.6134 1.5610 12 6 0.4749 -4.1347 1.7748 13 6 1.4884 -4.8219 0.8429 14 1 0.9667 -5.4604 0.1298 15 7 2.4380 -5.6191 1.6306 16 6 1.9248 -6.9768 1.8569 17 1 1.1964 -7.2844 1.1066 18 6 1.4666 -7.2292 3.3029 19 6 2.1043 -8.6230 3.1785 20 6 3.0280 -8.0184 2.1079 21 1 3.9461 -7.5930 2.5131 22 6 3.2765 -8.9469 0.9175 23 6 4.7192 -9.1028 0.4323 24 6 3.7133 -8.3043 -0.4006 25 6 2.2347 -3.6965 0.0968 26 1 -0.4850 0.8400 -0.0004 27 1 1.3083 -2.1937 2.3097 28 1 -0.3325 -2.1153 1.5944 29 1 -0.5385 -4.4397 1.5141 30 1 0.6876 -4.3922 2.8124 31 1 3.3441 -5.6441 1.1876 32 1 1.9578 -6.5881 4.0349 33 1 0.3831 -7.2537 3.4197 34 1 1.4242 -9.3813 2.7905 35 1 2.6301 -8.9459 4.0770 36 1 2.6291 -9.8219 0.8606 37 1 5.4911 -8.5435 0.9609 38 1 5.0207 -10.0803 0.0559 39 1 3.3534 -8.7568 -1.3246 40 1 3.8232 -7.2201 -0.4197 41 1 2.4291 -3.9868 -0.9356 42 1 3.1671 -3.4520 0.6055 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393527520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:09 Heat of formation + Delta-G solvation = 24.069904 kcal Electronic energy + Delta-G solvation = -18531.424015 eV Core-core repulsion = 15897.590850 eV Total energy + Delta-G solvation = -2633.833165 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.71913 -37.31151 -35.94585 -33.12651 -31.41971 -28.02628 -26.60066 -26.17229 -23.92090 -23.18922 -22.42077 -20.85687 -19.76723 -19.02241 -18.73617 -16.35715 -15.96633 -15.63087 -15.06439 -14.73549 -14.50667 -13.83617 -13.43170 -13.05921 -12.60771 -12.27286 -12.06600 -11.87679 -11.76440 -11.60930 -11.19384 -10.97845 -10.89281 -10.80093 -10.65449 -10.43541 -10.34566 -10.09232 -9.97906 -9.77895 -9.62185 -9.42275 -8.99897 -8.74128 -8.28475 -7.98777 -5.95006 -3.95690 3.34776 3.41721 3.44748 3.63702 4.42046 4.49791 4.56495 4.64846 4.74259 4.94830 5.01936 5.06535 5.15919 5.37579 5.40709 5.53597 5.63656 5.67212 5.74404 5.79896 5.81171 5.90415 6.00757 6.03821 6.07318 6.13413 6.34264 6.36483 6.50740 6.60210 6.73780 6.85955 6.95722 7.07538 7.26067 7.40895 7.67485 7.73394 7.84800 7.98377 8.10186 8.53777 9.06882 9.67287 11.15329 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.034109 B = 0.004613 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.707421 B = 6068.995950 C = 6534.930131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.288 1.288 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.052 3.948 10 H 0.032 0.968 11 C -0.101 4.101 12 C -0.113 4.113 13 C 0.084 3.916 14 H 0.032 0.968 15 N -0.669 5.669 16 C 0.072 3.928 17 H 0.069 0.931 18 C -0.128 4.128 19 C -0.134 4.134 20 C -0.085 4.085 21 H 0.095 0.905 22 C -0.143 4.143 23 C -0.181 4.181 24 C -0.179 4.179 25 C -0.119 4.119 26 H 0.258 0.742 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.335 0.665 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.041 0.959 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.708 -17.556 3.482 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.214 1.214 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.033 3.967 10 H 0.050 0.950 11 C -0.140 4.140 12 C -0.152 4.152 13 C -0.025 4.025 14 H 0.050 0.950 15 N -0.300 5.300 16 C -0.039 4.039 17 H 0.087 0.913 18 C -0.166 4.166 19 C -0.172 4.172 20 C -0.104 4.104 21 H 0.113 0.887 22 C -0.162 4.162 23 C -0.218 4.218 24 C -0.216 4.216 25 C -0.157 4.157 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.154 0.846 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.060 0.940 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.328 -17.186 4.069 18.184 hybrid contribution 0.507 0.525 -0.921 1.176 sum 4.836 -16.661 3.148 17.632 Atomic orbital electron populations 1.69975 1.05906 1.26316 1.50716 1.24966 0.94764 0.98940 0.95161 0.86671 0.79995 0.83931 0.77939 1.20763 1.19960 1.21385 1.21140 0.93286 0.90789 1.49701 0.92771 1.19521 0.92982 0.91134 0.93094 0.94969 1.22323 1.00683 0.91219 0.99733 1.22270 0.96129 0.98124 0.98655 1.22341 0.93262 0.93990 0.92936 0.94965 1.60840 1.05417 1.11125 1.52634 1.23116 0.96147 0.87835 0.96787 0.91332 1.22997 1.00208 0.95662 0.97741 1.22816 0.98604 0.97162 0.98622 1.22496 0.98202 0.95505 0.94181 0.88697 1.22354 0.97611 1.01011 0.95183 1.23002 0.92737 1.01605 1.04462 1.22929 1.03976 0.99909 0.94755 1.22660 0.99908 0.96090 0.97066 0.93181 0.93466 0.92393 0.94008 0.92361 0.84586 0.89427 0.91979 0.90499 0.91515 0.88058 0.88823 0.89213 0.89059 0.88739 0.93975 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 12.78 55.43 0.71 -25.42 16 2 C 0.06 1.78 5.32 -17.82 -0.09 1.69 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.51 -14.26 8.48 -34.44 -0.29 -14.56 16 8 H 0.05 1.50 7.77 -52.49 -0.41 1.09 16 9 C 0.05 1.30 2.66 -89.77 -0.24 1.06 16 10 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 11 C -0.10 -2.41 5.89 -24.96 -0.15 -2.56 16 12 C -0.11 -2.23 6.55 -25.51 -0.17 -2.40 16 13 C 0.08 1.52 3.24 -66.59 -0.22 1.30 16 14 H 0.03 0.58 7.47 -51.92 -0.39 0.19 16 15 N -0.67 -10.24 6.22 -97.71 -0.61 -10.85 16 16 C 0.07 0.92 3.47 -66.90 -0.23 0.69 16 17 H 0.07 0.94 7.43 -51.93 -0.39 0.56 16 18 C -0.13 -1.54 7.88 -25.92 -0.20 -1.74 16 19 C -0.13 -1.34 7.63 -25.92 -0.20 -1.53 16 20 C -0.08 -0.91 3.45 -89.80 -0.31 -1.22 16 21 H 0.09 1.07 8.08 -51.93 -0.42 0.65 16 22 C -0.14 -1.42 5.54 -90.61 -0.50 -1.93 16 23 C -0.18 -1.67 10.22 -26.69 -0.27 -1.95 16 24 C -0.18 -1.84 10.06 -26.69 -0.27 -2.11 16 25 C -0.12 -2.48 5.67 -25.07 -0.14 -2.62 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.05 1.17 8.04 -51.93 -0.42 0.75 16 28 H 0.06 1.49 7.87 -51.93 -0.41 1.08 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.10 7.92 -51.93 -0.41 0.69 16 31 H 0.34 4.89 7.76 -39.30 -0.31 4.59 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.71 7.98 -51.93 -0.41 0.29 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.95 7.97 -51.93 -0.41 0.54 16 37 H 0.09 0.85 8.13 -51.93 -0.42 0.43 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 1.08 7.77 -51.93 -0.40 0.67 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.32 7.85 -51.93 -0.41 0.91 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -28.23 331.41 -10.93 -39.17 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.72 Total: 3.37 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: -3.29 Total: -27.87 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.10 Total: -36.27 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.23 -10.93 -39.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393527520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.237 kcal (2) G-P(sol) polarization free energy of solvation -28.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds