Wall clock time and date at job start Mon Mar 30 2020 06:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99781 * 2 1 4 4 H 1.48492 * 109.47295 * 85.15470 * 3 2 1 5 5 H 1.48500 * 109.47065 * 205.15631 * 3 2 1 6 6 H 1.48505 * 109.47181 * 325.15044 * 3 2 1 7 7 C 1.37872 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00031 * 173.46409 * 7 2 1 9 9 C 1.50700 * 120.00101 * 353.46796 * 7 2 1 10 10 H 1.09000 * 110.67501 * 55.90218 * 9 7 2 11 11 C 1.54891 * 110.75660 * 292.66539 * 9 7 2 12 12 C 1.54468 * 104.10272 * 203.89182 * 11 9 7 13 13 C 1.53876 * 106.68290 * 23.34946 * 12 11 9 14 14 H 1.09008 * 110.03131 * 240.87094 * 13 12 11 15 15 N 1.46896 * 110.07979 * 119.46170 * 13 12 11 16 16 C 1.46902 * 110.99854 * 87.80189 * 15 13 12 17 17 H 1.09000 * 112.84842 * 23.81024 * 16 15 13 18 18 C 1.53782 * 113.61665 * 252.50133 * 16 15 13 19 19 C 1.53781 * 87.08112 * 220.02149 * 18 16 15 20 20 C 1.53777 * 87.08191 * 25.43391 * 19 18 16 21 21 H 1.08997 * 113.61755 * 89.11652 * 20 19 18 22 22 C 1.53005 * 113.61401 * 220.02331 * 20 19 18 23 23 C 1.53010 * 117.49518 * 226.24178 * 22 20 19 24 24 C 1.53004 * 117.49937 * 157.58813 * 22 20 19 25 25 C 1.54271 * 106.60109 * 0.15193 * 13 12 11 26 26 H 0.96993 * 120.00077 * 0.02562 * 1 2 3 27 27 H 1.09000 * 110.48772 * 322.42088 * 11 9 7 28 28 H 1.09006 * 110.48348 * 85.06451 * 11 9 7 29 29 H 1.08992 * 109.86021 * 264.10604 * 12 11 9 30 30 H 1.09004 * 110.11869 * 142.72792 * 12 11 9 31 31 H 1.00893 * 111.00783 * 211.76195 * 15 13 12 32 32 H 1.09001 * 113.61576 * 334.56646 * 18 16 15 33 33 H 1.09003 * 113.61426 * 105.47307 * 18 16 15 34 34 H 1.08999 * 113.61483 * 270.88644 * 19 18 16 35 35 H 1.09002 * 113.69054 * 139.99525 * 19 18 16 36 36 H 1.08995 * 115.55399 * 11.90792 * 22 20 19 37 37 H 1.09003 * 117.49733 * 359.97438 * 23 22 20 38 38 H 1.09004 * 117.49617 * 145.01712 * 23 22 20 39 39 H 1.09004 * 117.49424 * 214.97858 * 24 22 20 40 40 H 1.09000 * 117.49889 * 359.97438 * 24 22 20 41 41 H 1.08993 * 110.48927 * 217.71877 * 25 13 12 42 42 H 1.08995 * 110.59728 * 95.12572 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3942 2.1055 1.3950 5 1 3.5941 1.4128 -0.5952 6 1 1.5015 2.6209 -0.8001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0793 -1.1970 -0.1070 9 6 1.2584 -2.4949 0.1473 10 1 0.4912 -2.5881 -0.6213 11 6 0.6365 -2.6134 1.5610 12 6 0.4749 -4.1347 1.7748 13 6 1.4884 -4.8219 0.8429 14 1 0.9667 -5.4604 0.1298 15 7 2.4380 -5.6191 1.6306 16 6 1.9248 -6.9768 1.8569 17 1 1.1964 -7.2844 1.1066 18 6 1.4666 -7.2292 3.3029 19 6 2.1043 -8.6230 3.1785 20 6 3.0280 -8.0184 2.1079 21 1 3.9461 -7.5930 2.5131 22 6 3.2765 -8.9469 0.9175 23 6 4.7192 -9.1028 0.4323 24 6 3.7133 -8.3043 -0.4006 25 6 2.2347 -3.6965 0.0968 26 1 -0.4850 0.8400 -0.0004 27 1 1.3083 -2.1937 2.3097 28 1 -0.3325 -2.1153 1.5944 29 1 -0.5385 -4.4397 1.5141 30 1 0.6876 -4.3922 2.8124 31 1 3.3441 -5.6441 1.1876 32 1 1.9578 -6.5881 4.0349 33 1 0.3831 -7.2537 3.4197 34 1 1.4242 -9.3813 2.7905 35 1 2.6301 -8.9459 4.0770 36 1 2.6291 -9.8219 0.8606 37 1 5.4911 -8.5435 0.9609 38 1 5.0207 -10.0803 0.0559 39 1 3.3534 -8.7568 -1.3246 40 1 3.8232 -7.2201 -0.4197 41 1 2.4291 -3.9868 -0.9356 42 1 3.1671 -3.4520 0.6055 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393527520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:08 Heat of formation + Delta-G solvation = 9.850874 kcal Electronic energy + Delta-G solvation = -18532.040599 eV Core-core repulsion = 15897.590850 eV Total energy + Delta-G solvation = -2634.449749 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.69800 -38.87230 -36.85095 -34.94236 -33.11945 -29.87560 -28.27089 -27.05008 -25.71943 -24.40768 -23.16997 -21.69761 -21.29393 -20.67612 -20.00020 -18.39823 -16.87855 -16.75913 -16.60869 -16.49525 -15.75416 -15.25098 -14.60678 -14.28821 -13.96945 -13.91937 -13.68857 -13.12967 -13.04621 -12.72941 -12.63218 -12.45767 -12.36787 -12.18844 -12.10577 -11.73406 -11.62018 -11.52482 -11.37489 -11.32682 -10.97425 -10.82342 -10.75769 -10.50534 -10.44640 -9.24207 -8.11921 -6.19838 1.40607 1.41903 1.52060 2.44254 2.85598 3.19368 3.34475 3.68931 3.75753 3.86403 3.99798 4.12286 4.15273 4.19742 4.26999 4.28215 4.35979 4.60245 4.68231 4.77550 4.81119 4.85892 4.99533 4.99998 5.02615 5.07043 5.17001 5.18200 5.18976 5.26875 5.28700 5.32358 5.37159 5.46185 5.48724 5.63726 5.66603 5.89329 6.00244 6.37966 6.41273 6.58669 6.90942 7.46877 8.98154 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.034109 B = 0.004613 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.707421 B = 6068.995950 C = 6534.930131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.284 1.284 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.041 3.959 10 H 0.000 1.000 11 C -0.093 4.093 12 C -0.102 4.102 13 C 0.098 3.902 14 H 0.039 0.961 15 N -0.670 5.670 16 C 0.064 3.936 17 H 0.064 0.936 18 C -0.131 4.131 19 C -0.121 4.121 20 C -0.076 4.076 21 H 0.092 0.908 22 C -0.144 4.144 23 C -0.172 4.172 24 C -0.191 4.191 25 C -0.108 4.108 26 H 0.260 0.740 27 H 0.032 0.968 28 H 0.029 0.971 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.340 0.660 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.863 -19.151 3.970 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.191 1.191 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.022 3.978 10 H 0.018 0.982 11 C -0.132 4.132 12 C -0.141 4.141 13 C -0.011 4.011 14 H 0.057 0.943 15 N -0.301 5.301 16 C -0.046 4.046 17 H 0.082 0.918 18 C -0.170 4.170 19 C -0.159 4.159 20 C -0.095 4.095 21 H 0.110 0.890 22 C -0.162 4.162 23 C -0.209 4.209 24 C -0.228 4.228 25 C -0.146 4.146 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.160 0.840 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.497 -18.798 4.560 20.109 hybrid contribution 0.136 1.023 -1.089 1.500 sum 5.634 -17.775 3.471 18.967 Atomic orbital electron populations 1.70100 1.07365 1.27167 1.51562 1.25761 0.95584 1.02448 0.94825 0.85640 0.78934 0.79614 0.78079 1.20245 1.19079 1.20944 1.21518 0.93439 0.92280 1.49607 0.92944 1.19507 0.93186 0.92324 0.92786 0.98220 1.22126 0.98501 0.94079 0.98494 1.22155 0.97210 0.94951 0.99742 1.22053 0.93038 0.93491 0.92567 0.94300 1.60780 1.05090 1.12541 1.51733 1.23235 0.97221 0.86944 0.97176 0.91794 1.22999 1.00254 0.97060 0.96678 1.22774 0.98185 0.96127 0.98793 1.22406 0.97502 0.94820 0.94779 0.89024 1.22371 0.98432 1.01017 0.94403 1.23067 0.92298 1.01984 1.03517 1.22927 1.05231 0.99284 0.95326 1.22482 0.98838 0.95210 0.98061 0.93136 0.94951 0.95218 0.93310 0.91325 0.84019 0.90376 0.92064 0.89290 0.90278 0.87066 0.88757 0.87828 0.88595 0.90147 0.93251 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.44 12.78 21.45 0.27 -55.16 16 2 C 0.01 0.70 5.32 84.65 0.45 1.15 16 3 Si 0.95 44.72 29.54 68.60 2.03 46.74 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.53 -30.14 8.48 25.60 0.22 -29.93 16 8 H 0.05 2.92 7.77 -2.91 -0.02 2.90 16 9 C 0.04 2.12 2.66 -10.25 -0.03 2.09 16 10 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 11 C -0.09 -4.57 5.89 31.74 0.19 -4.39 16 12 C -0.10 -3.98 6.55 31.39 0.21 -3.78 16 13 C 0.10 3.47 3.24 45.64 0.15 3.62 16 14 H 0.04 1.34 7.47 -2.38 -0.02 1.33 16 15 N -0.67 -19.56 6.22 -463.06 -2.88 -22.44 16 16 C 0.06 1.54 3.47 45.44 0.16 1.69 16 17 H 0.06 1.63 7.43 -2.39 -0.02 1.62 16 18 C -0.13 -2.90 7.88 31.12 0.25 -2.66 16 19 C -0.12 -2.06 7.63 31.12 0.24 -1.82 16 20 C -0.08 -1.45 3.45 -10.27 -0.04 -1.49 16 21 H 0.09 1.84 8.08 -2.39 -0.02 1.82 16 22 C -0.14 -2.49 5.54 -10.79 -0.06 -2.55 16 23 C -0.17 -2.74 10.22 30.62 0.31 -2.43 16 24 C -0.19 -3.59 10.06 30.62 0.31 -3.28 16 25 C -0.11 -4.48 5.67 31.67 0.18 -4.30 16 26 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 27 H 0.03 1.63 8.04 -2.39 -0.02 1.61 16 28 H 0.03 1.57 7.87 -2.38 -0.02 1.55 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 2.53 7.92 -2.38 -0.02 2.51 16 31 H 0.34 9.45 7.76 -89.70 -0.70 8.75 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.33 7.98 -2.39 -0.02 1.31 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.11 1.73 7.97 -2.39 -0.02 1.71 16 37 H 0.09 1.50 8.13 -2.39 -0.02 1.48 16 38 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.08 1.74 7.77 -2.39 -0.02 1.72 16 41 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.06 2.52 7.85 -2.39 -0.02 2.50 16 Total: -1.00 -60.92 331.41 2.21 -58.71 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.27 Total: 20.22 kcal Atomic # 6 Polarization: -50.59 SS G_CDS: 2.53 Total: -48.06 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -2.61 Total: -77.61 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -60.92 2.21 -58.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393527520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.559 kcal (2) G-P(sol) polarization free energy of solvation -60.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds