Wall clock time and date at job start Mon Mar 30 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00159 * 2 1 4 4 H 1.48499 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47106 * 300.00120 * 3 2 1 6 6 H 1.48504 * 109.47074 * 59.99991 * 3 2 1 7 7 C 1.37877 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00317 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99484 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.27574 * 302.09166 * 9 7 2 11 11 C 1.54592 * 110.39082 * 64.23704 * 9 7 2 12 12 C 1.54934 * 102.92082 * 140.91337 * 11 9 7 13 13 N 1.48535 * 103.22824 * 322.58641 * 12 11 9 14 14 C 1.46906 * 110.99968 * 159.71917 * 13 12 11 15 15 C 1.52999 * 109.46884 * 52.60434 * 14 13 12 16 16 C 1.50701 * 109.46879 * 180.02562 * 15 14 13 17 17 C 1.29443 * 117.96595 * 94.99560 * 16 15 14 18 18 C 1.50066 * 124.07673 * 180.46874 * 17 16 15 19 19 C 1.53028 * 110.14752 * 342.87087 * 18 17 16 20 20 C 1.53394 * 108.61400 * 49.33057 * 19 18 17 21 21 C 1.50075 * 117.95953 * 275.02088 * 16 15 14 22 22 C 1.47893 * 105.82114 * 39.20600 * 13 12 11 23 23 H 0.97003 * 119.99762 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.72442 * 259.27205 * 11 9 7 25 25 H 1.09000 * 110.72854 * 22.38079 * 11 9 7 26 26 H 1.08997 * 110.67113 * 204.14538 * 12 11 9 27 27 H 1.09002 * 110.66593 * 81.01988 * 12 11 9 28 28 H 1.08997 * 109.47008 * 292.60149 * 14 13 12 29 29 H 1.08994 * 109.47047 * 172.60102 * 14 13 12 30 30 H 1.08997 * 109.47531 * 60.00035 * 15 14 13 31 31 H 1.09003 * 109.46969 * 299.99473 * 15 14 13 32 32 H 1.07994 * 117.95887 * 0.49301 * 17 16 15 33 33 H 1.08998 * 109.35982 * 222.66595 * 18 17 16 34 34 H 1.08998 * 109.24789 * 103.00399 * 18 17 16 35 35 H 1.09002 * 109.64314 * 169.12109 * 19 18 17 36 36 H 1.09002 * 109.64302 * 289.53940 * 19 18 17 37 37 H 1.08999 * 109.64244 * 52.35093 * 20 19 18 38 38 H 1.09000 * 109.64215 * 172.99046 * 20 19 18 39 39 H 1.09008 * 109.35269 * 283.07624 * 21 16 15 40 40 H 1.08998 * 109.35879 * 42.79086 * 21 16 15 41 41 H 1.09006 * 109.92004 * 94.02030 * 22 13 12 42 42 H 1.09000 * 109.92091 * 215.12140 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.5921 -2.5549 0.8659 11 6 0.4357 -2.6504 -1.3053 12 6 0.5999 -4.1533 -1.6442 13 7 2.0039 -4.4387 -1.2521 14 6 2.2102 -5.8783 -1.0442 15 6 1.7262 -6.6459 -2.2760 16 6 1.9372 -8.1227 -2.0625 17 6 0.9449 -8.8181 -1.6072 18 6 1.0064 -10.2925 -1.3346 19 6 2.2100 -10.9109 -2.0493 20 6 3.4522 -10.0675 -1.7355 21 6 3.2850 -8.6955 -2.3905 22 6 2.2345 -3.6842 -0.0012 23 1 -0.4850 0.8401 -0.0004 24 1 -0.6128 -2.4056 -1.1355 25 1 0.8530 -2.0263 -2.0955 26 1 0.4558 -4.3252 -2.7108 27 1 -0.0933 -4.7576 -1.0590 28 1 1.6474 -6.2033 -0.1692 29 1 3.2708 -6.0744 -0.8875 30 1 2.2890 -6.3208 -3.1510 31 1 0.6655 -6.4498 -2.4327 32 1 0.0148 -8.3053 -1.4116 33 1 0.0917 -10.7647 -1.6930 34 1 1.1007 -10.4559 -0.2611 35 1 2.3611 -11.9311 -1.6967 36 1 2.0338 -10.9174 -3.1250 37 1 3.5489 -9.9449 -0.6567 38 1 4.3397 -10.5604 -2.1324 39 1 3.3792 -8.8014 -3.4714 40 1 4.0618 -8.0243 -2.0243 41 1 2.0441 -4.3252 0.8597 42 1 3.2610 -3.3186 0.0281 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397632690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:19 Heat of formation + Delta-G solvation = -10.399872 kcal Electronic energy + Delta-G solvation = -18217.699032 eV Core-core repulsion = 15582.371145 eV Total energy + Delta-G solvation = -2635.327887 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.04427 -37.86057 -34.11486 -32.51128 -30.87606 -30.31769 -28.20290 -27.19047 -24.23981 -23.44585 -22.68653 -21.36698 -19.71447 -19.30545 -17.57046 -16.48897 -15.86060 -15.02819 -14.73260 -14.48106 -14.34284 -14.01437 -13.81765 -13.19733 -12.85062 -12.66202 -12.50131 -12.24597 -12.03371 -11.80652 -11.57857 -11.05689 -10.94227 -10.80002 -10.73120 -10.60714 -10.51898 -10.39323 -10.22059 -10.11524 -9.61624 -9.25897 -8.73539 -8.69857 -8.36746 -7.65398 -5.97598 -3.99103 2.25180 3.32971 3.40851 3.45515 4.47668 4.52360 4.60280 4.75597 4.83376 5.11332 5.25414 5.31750 5.34840 5.38638 5.46280 5.47721 5.57083 5.69397 5.76728 5.83568 5.87103 5.89076 5.95298 6.04357 6.08712 6.16914 6.22638 6.27880 6.36238 6.40175 6.58980 6.71039 6.92113 7.06804 7.17575 7.25372 7.51307 7.69350 7.86081 7.94902 8.07278 8.48757 9.02637 9.64108 11.12596 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.056455 B = 0.003781 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.855421 B = 7403.385382 C = 7629.857758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.505 4.505 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.029 0.971 11 C -0.092 4.092 12 C 0.029 3.971 13 N -0.517 5.517 14 C 0.056 3.944 15 C -0.088 4.088 16 C -0.111 4.111 17 C -0.167 4.167 18 C -0.087 4.087 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.084 4.084 22 C 0.045 3.955 23 H 0.258 0.742 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.018 0.982 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.893 -19.054 -4.089 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.047 0.953 11 C -0.131 4.131 12 C -0.098 4.098 13 N -0.241 5.241 14 C -0.073 4.073 15 C -0.126 4.126 16 C -0.111 4.111 17 C -0.185 4.185 18 C -0.124 4.124 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.121 4.121 22 C -0.082 4.082 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.037 0.963 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.117 -18.766 -4.484 19.544 hybrid contribution -0.239 0.710 0.681 1.012 sum 2.878 -18.056 -3.804 18.675 Atomic orbital electron populations 1.69981 1.05893 1.26291 1.50896 1.24990 0.94856 0.99069 0.95249 0.86556 0.80217 0.83904 0.77450 1.19759 1.21094 1.21176 1.21228 0.92775 0.90181 1.50199 0.92426 1.19497 0.92503 0.91962 0.94003 0.95300 1.22400 1.00163 0.90690 0.99829 1.23332 0.88443 0.99150 0.98897 1.64801 1.23145 1.05273 1.30914 1.22192 1.00474 0.89105 0.95537 1.20832 1.01833 0.90823 0.99065 1.20882 0.95288 0.95452 0.99522 1.21887 0.98757 0.95595 1.02251 1.20395 0.98299 0.93275 1.00403 1.21594 0.95044 0.98508 1.00604 1.21590 0.97642 0.95547 1.00974 1.20389 0.94951 0.96114 1.00614 1.23093 1.01770 0.95458 0.87910 0.93201 0.92413 0.92022 0.91873 0.95444 0.95528 0.91491 0.90732 0.91389 0.88098 0.91441 0.91250 0.92046 0.91898 0.91819 0.91821 0.91044 0.90804 0.96333 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 12.63 55.43 0.70 -25.22 16 2 C 0.06 1.67 5.34 -17.82 -0.10 1.58 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.13 8.38 -34.44 -0.29 -14.41 16 8 H 0.06 1.60 7.35 -52.49 -0.39 1.22 16 9 C 0.04 1.01 2.87 -90.41 -0.26 0.75 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.09 -2.21 5.75 -24.87 -0.14 -2.35 16 12 C 0.03 0.58 5.10 -1.90 -0.01 0.57 16 13 N -0.52 -10.24 5.40 -230.45 -1.24 -11.48 16 14 C 0.06 0.90 5.01 -3.82 -0.02 0.88 16 15 C -0.09 -1.22 4.88 -27.88 -0.14 -1.36 16 16 C -0.11 -1.33 5.09 -100.94 -0.51 -1.85 16 17 C -0.17 -1.92 9.37 -35.90 -0.34 -2.25 16 18 C -0.09 -0.81 6.12 -28.17 -0.17 -0.98 16 19 C -0.12 -1.02 6.00 -26.51 -0.16 -1.18 16 20 C -0.12 -1.07 6.02 -26.55 -0.16 -1.23 16 21 C -0.08 -0.87 5.79 -28.21 -0.16 -1.03 16 22 C 0.04 0.99 6.34 -2.76 -0.02 0.97 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.06 1.43 8.12 -51.93 -0.42 1.01 16 25 H 0.06 1.58 7.86 -51.93 -0.41 1.18 16 26 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 27 H 0.03 0.52 8.00 -51.93 -0.42 0.11 16 28 H 0.03 0.44 7.81 -51.93 -0.41 0.04 16 29 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 30 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 31 H 0.07 0.97 6.45 -51.93 -0.33 0.63 16 32 H 0.10 1.20 7.74 -52.49 -0.41 0.79 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 37 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 41 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 42 H 0.07 1.57 7.40 -51.93 -0.38 1.19 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -28.63 324.66 -10.88 -39.51 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -7.73 Total: -2.38 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -2.47 Total: -21.90 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.54 Total: -36.71 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.63 -10.88 -39.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397632690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.113 kcal (2) G-P(sol) polarization free energy of solvation -28.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds