Wall clock time and date at job start Mon Mar 30 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00159 * 2 1 4 4 H 1.48499 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47106 * 300.00120 * 3 2 1 6 6 H 1.48504 * 109.47074 * 59.99991 * 3 2 1 7 7 C 1.37877 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00317 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99484 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.27574 * 302.09166 * 9 7 2 11 11 C 1.54592 * 110.39082 * 64.23704 * 9 7 2 12 12 C 1.54934 * 102.92082 * 140.91337 * 11 9 7 13 13 N 1.48535 * 103.22824 * 322.58641 * 12 11 9 14 14 C 1.46906 * 110.99968 * 159.71917 * 13 12 11 15 15 C 1.52999 * 109.46884 * 52.60434 * 14 13 12 16 16 C 1.50701 * 109.46879 * 180.02562 * 15 14 13 17 17 C 1.29443 * 117.96595 * 94.99560 * 16 15 14 18 18 C 1.50066 * 124.07673 * 180.46874 * 17 16 15 19 19 C 1.53028 * 110.14752 * 342.87087 * 18 17 16 20 20 C 1.53394 * 108.61400 * 49.33057 * 19 18 17 21 21 C 1.50075 * 117.95953 * 275.02088 * 16 15 14 22 22 C 1.47893 * 105.82114 * 39.20600 * 13 12 11 23 23 H 0.97003 * 119.99762 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.72442 * 259.27205 * 11 9 7 25 25 H 1.09000 * 110.72854 * 22.38079 * 11 9 7 26 26 H 1.08997 * 110.67113 * 204.14538 * 12 11 9 27 27 H 1.09002 * 110.66593 * 81.01988 * 12 11 9 28 28 H 1.08997 * 109.47008 * 292.60149 * 14 13 12 29 29 H 1.08994 * 109.47047 * 172.60102 * 14 13 12 30 30 H 1.08997 * 109.47531 * 60.00035 * 15 14 13 31 31 H 1.09003 * 109.46969 * 299.99473 * 15 14 13 32 32 H 1.07994 * 117.95887 * 0.49301 * 17 16 15 33 33 H 1.08998 * 109.35982 * 222.66595 * 18 17 16 34 34 H 1.08998 * 109.24789 * 103.00399 * 18 17 16 35 35 H 1.09002 * 109.64314 * 169.12109 * 19 18 17 36 36 H 1.09002 * 109.64302 * 289.53940 * 19 18 17 37 37 H 1.08999 * 109.64244 * 52.35093 * 20 19 18 38 38 H 1.09000 * 109.64215 * 172.99046 * 20 19 18 39 39 H 1.09008 * 109.35269 * 283.07624 * 21 16 15 40 40 H 1.08998 * 109.35879 * 42.79086 * 21 16 15 41 41 H 1.09006 * 109.92004 * 94.02030 * 22 13 12 42 42 H 1.09000 * 109.92091 * 215.12140 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.5921 -2.5549 0.8659 11 6 0.4357 -2.6504 -1.3053 12 6 0.5999 -4.1533 -1.6442 13 7 2.0039 -4.4387 -1.2521 14 6 2.2102 -5.8783 -1.0442 15 6 1.7262 -6.6459 -2.2760 16 6 1.9372 -8.1227 -2.0625 17 6 0.9449 -8.8181 -1.6072 18 6 1.0064 -10.2925 -1.3346 19 6 2.2100 -10.9109 -2.0493 20 6 3.4522 -10.0675 -1.7355 21 6 3.2850 -8.6955 -2.3905 22 6 2.2345 -3.6842 -0.0012 23 1 -0.4850 0.8401 -0.0004 24 1 -0.6128 -2.4056 -1.1355 25 1 0.8530 -2.0263 -2.0955 26 1 0.4558 -4.3252 -2.7108 27 1 -0.0933 -4.7576 -1.0590 28 1 1.6474 -6.2033 -0.1692 29 1 3.2708 -6.0744 -0.8875 30 1 2.2890 -6.3208 -3.1510 31 1 0.6655 -6.4498 -2.4327 32 1 0.0148 -8.3053 -1.4116 33 1 0.0917 -10.7647 -1.6930 34 1 1.1007 -10.4559 -0.2611 35 1 2.3611 -11.9311 -1.6967 36 1 2.0338 -10.9174 -3.1250 37 1 3.5489 -9.9449 -0.6567 38 1 4.3397 -10.5604 -2.1324 39 1 3.3792 -8.8014 -3.4714 40 1 4.0618 -8.0243 -2.0243 41 1 2.0441 -4.3252 0.8597 42 1 3.2610 -3.3186 0.0281 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397632690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:18 Heat of formation + Delta-G solvation = -25.406132 kcal Electronic energy + Delta-G solvation = -18218.349752 eV Core-core repulsion = 15582.371145 eV Total energy + Delta-G solvation = -2635.978607 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.19238 -39.22505 -35.64266 -34.14732 -31.93280 -31.57487 -30.02195 -28.54981 -26.13807 -24.46715 -23.78193 -22.40384 -21.31660 -21.11413 -18.59423 -18.40233 -17.00128 -16.59693 -16.36471 -15.93009 -15.51619 -15.17224 -14.66637 -14.61390 -14.25058 -13.90352 -13.80910 -13.53536 -13.19793 -13.10114 -12.91960 -12.88104 -12.63730 -12.40099 -12.22812 -12.00846 -11.85073 -11.61001 -11.56623 -11.28803 -11.21109 -10.97608 -10.81927 -10.50844 -9.61707 -9.25739 -8.13534 -6.22332 1.34208 1.40480 1.42140 1.54193 2.43663 3.14564 3.20404 3.78151 3.87683 4.06008 4.08953 4.15495 4.20416 4.38732 4.42293 4.48721 4.51422 4.53911 4.58929 4.67559 4.74385 4.77077 4.86902 4.93123 4.99384 5.05073 5.09130 5.14270 5.18791 5.22909 5.23458 5.34953 5.37924 5.49332 5.54390 5.70988 5.79735 5.83839 6.15146 6.17006 6.29017 6.38032 6.85976 7.44422 8.96379 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.056455 B = 0.003781 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.855421 B = 7403.385382 C = 7629.857758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.030 3.970 10 H -0.001 1.001 11 C -0.085 4.085 12 C 0.044 3.956 13 N -0.524 5.524 14 C 0.059 3.941 15 C -0.080 4.080 16 C -0.121 4.121 17 C -0.166 4.166 18 C -0.088 4.088 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.084 4.084 22 C 0.055 3.945 23 H 0.260 0.740 24 H 0.039 0.961 25 H 0.038 0.962 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.024 0.976 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.029 0.971 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.779 -20.541 -4.639 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.189 4.189 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.563 4.563 8 H 0.072 0.928 9 C 0.011 3.989 10 H 0.017 0.983 11 C -0.124 4.124 12 C -0.083 4.083 13 N -0.248 5.248 14 C -0.069 4.069 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.184 4.184 18 C -0.125 4.125 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.121 4.121 22 C -0.072 4.072 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.010 -20.270 -5.035 21.267 hybrid contribution -0.554 1.150 0.876 1.548 sum 3.455 -19.120 -4.159 19.870 Atomic orbital electron populations 1.70097 1.07255 1.27196 1.51494 1.25782 0.95720 1.02523 0.94839 0.85518 0.79104 0.79552 0.77570 1.19088 1.20629 1.20579 1.21544 0.92836 0.91600 1.50360 0.92796 1.19490 0.92999 0.92916 0.93505 0.98294 1.22177 0.98444 0.93476 0.98308 1.23193 0.88837 0.95957 1.00328 1.64771 1.22916 1.07499 1.29651 1.22242 1.01096 0.86859 0.96700 1.20731 1.01319 0.91980 0.97736 1.20872 0.96447 0.94310 1.00572 1.22086 0.98226 0.96923 1.01208 1.20455 0.99390 0.91822 1.00857 1.21601 0.94242 0.99163 1.00562 1.21597 0.98577 0.94878 1.00572 1.20413 0.93717 0.96818 1.01167 1.22847 1.00219 0.94631 0.89525 0.93073 0.94237 0.94321 0.89752 0.94452 0.95798 0.90658 0.90808 0.91842 0.88867 0.90382 0.90831 0.90455 0.91850 0.92325 0.90361 0.90412 0.91235 0.95287 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.59 12.63 21.45 0.27 -54.31 16 2 C 0.01 0.56 5.34 84.65 0.45 1.01 16 3 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.53 -29.89 8.38 25.60 0.21 -29.67 16 8 H 0.05 3.03 7.35 -2.91 -0.02 3.01 16 9 C 0.03 1.57 2.87 -10.66 -0.03 1.54 16 10 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 11 C -0.09 -4.17 5.75 31.80 0.18 -3.99 16 12 C 0.04 1.72 5.10 86.65 0.44 2.17 16 13 N -0.52 -20.28 5.40 -883.02 -4.76 -25.05 16 14 C 0.06 1.83 5.01 86.30 0.43 2.26 16 15 C -0.08 -2.09 4.88 29.85 0.15 -1.94 16 16 C -0.12 -2.70 5.09 -15.09 -0.08 -2.78 16 17 C -0.17 -3.52 9.37 27.04 0.25 -3.27 16 18 C -0.09 -1.45 6.12 29.66 0.18 -1.27 16 19 C -0.12 -1.68 6.00 30.74 0.18 -1.50 16 20 C -0.12 -1.83 6.02 30.71 0.18 -1.65 16 21 C -0.08 -1.57 5.79 29.64 0.17 -1.40 16 22 C 0.06 2.44 6.34 86.45 0.55 2.99 16 23 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 24 H 0.04 2.02 8.12 -2.39 -0.02 2.00 16 25 H 0.04 2.03 7.86 -2.39 -0.02 2.01 16 26 H 0.08 2.94 7.66 -2.39 -0.02 2.92 16 27 H 0.04 1.38 8.00 -2.39 -0.02 1.36 16 28 H 0.02 0.76 7.81 -2.39 -0.02 0.74 16 29 H 0.08 2.22 8.11 -2.39 -0.02 2.20 16 30 H 0.07 1.94 8.11 -2.39 -0.02 1.92 16 31 H 0.06 1.70 6.45 -2.39 -0.02 1.68 16 32 H 0.09 2.09 7.74 -2.91 -0.02 2.07 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 37 H 0.06 0.96 8.13 -2.39 -0.02 0.95 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.07 1.34 8.11 -2.39 -0.02 1.32 16 41 H 0.03 1.19 7.57 -2.38 -0.02 1.18 16 42 H 0.06 2.85 7.40 -2.39 -0.02 2.83 16 Total: -1.00 -61.25 324.66 1.77 -59.48 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.95 Total: 10.74 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 3.29 Total: -37.50 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -4.49 Total: -79.36 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -61.25 1.77 -59.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397632690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.074 kcal (2) G-P(sol) polarization free energy of solvation -61.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds