Wall clock time and date at job start Mon Mar 30 2020 05:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99774 * 2 1 4 4 H 1.48500 * 109.47115 * 90.00146 * 3 2 1 5 5 H 1.48502 * 109.47533 * 330.00016 * 3 2 1 6 6 H 1.48506 * 109.46866 * 210.00367 * 3 2 1 7 7 C 1.37878 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99898 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.64862 * 59.29787 * 9 7 2 11 11 C 1.54594 * 110.71901 * 296.14015 * 9 7 2 12 12 C 1.53993 * 105.13936 * 219.68689 * 11 9 7 13 13 N 1.47899 * 107.05861 * 358.78115 * 12 11 9 14 14 C 1.46898 * 111.00167 * 145.84639 * 13 12 11 15 15 C 1.52995 * 109.47335 * 184.29010 * 14 13 12 16 16 C 1.50699 * 109.47307 * 185.14569 * 15 14 13 17 17 C 1.29438 * 117.96312 * 94.99968 * 16 15 14 18 18 C 1.50066 * 124.07692 * 180.44849 * 17 16 15 19 19 C 1.53019 * 110.14871 * 342.86441 * 18 17 16 20 20 C 1.53394 * 108.43413 * 49.43773 * 19 18 17 21 21 C 1.50064 * 117.96433 * 274.73272 * 16 15 14 22 22 C 1.48727 * 105.94514 * 25.19653 * 13 12 11 23 23 H 0.96999 * 119.99946 * 180.02562 * 1 2 3 24 24 H 1.08993 * 110.31234 * 338.60774 * 11 9 7 25 25 H 1.09005 * 110.30738 * 100.77635 * 11 9 7 26 26 H 1.09003 * 109.91586 * 118.13507 * 12 11 9 27 27 H 1.08998 * 109.91627 * 239.22718 * 12 11 9 28 28 H 1.09005 * 109.46701 * 304.29034 * 14 13 12 29 29 H 1.09004 * 109.47402 * 64.28302 * 14 13 12 30 30 H 1.08999 * 109.47002 * 305.14570 * 15 14 13 31 31 H 1.09003 * 109.47212 * 65.14425 * 15 14 13 32 32 H 1.08005 * 117.96510 * 0.46583 * 17 16 15 33 33 H 1.09004 * 109.36083 * 103.07619 * 18 17 16 34 34 H 1.09001 * 109.35693 * 222.79674 * 18 17 16 35 35 H 1.08996 * 109.64668 * 169.11735 * 19 18 17 36 36 H 1.08998 * 109.64339 * 289.54533 * 19 18 17 37 37 H 1.09001 * 109.64338 * 52.25011 * 20 19 18 38 38 H 1.09005 * 109.64138 * 172.66756 * 20 19 18 39 39 H 1.09005 * 109.36185 * 283.10458 * 21 16 15 40 40 H 1.09003 * 109.35399 * 42.68351 * 21 16 15 41 41 H 1.09000 * 110.84075 * 202.57206 * 22 13 12 42 42 H 1.09005 * 110.57709 * 79.38560 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 1.4465 2.6528 -0.7000 6 1 3.5466 1.4402 -0.7002 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6082 -2.5711 -0.8790 11 6 0.4253 -2.6552 1.2959 12 6 0.5679 -4.1376 1.6876 13 7 1.4013 -4.7824 0.6497 14 6 2.2450 -5.8351 1.2309 15 6 3.1670 -6.4042 0.1507 16 6 3.9420 -7.5676 0.7136 17 6 3.4734 -8.7588 0.5216 18 6 4.1265 -10.0111 1.0286 19 6 5.5823 -9.7302 1.4073 20 6 5.6191 -8.4845 2.3017 21 6 5.2122 -7.2735 1.4566 22 6 2.2307 -3.6979 0.0598 23 1 -0.4850 -0.8400 0.0004 24 1 0.8295 -2.0159 2.0807 25 1 -0.6209 -2.4119 1.1102 26 1 1.0553 -4.2198 2.6591 27 1 -0.4146 -4.6081 1.7244 28 1 2.8461 -5.4150 2.0373 29 1 1.6130 -6.6308 1.6254 30 1 2.5694 -6.7414 -0.6963 31 1 3.8608 -5.6309 -0.1791 32 1 2.5553 -8.8577 -0.0387 33 1 3.5878 -10.3700 1.9057 34 1 4.0985 -10.7738 0.2504 35 1 5.9909 -10.5827 1.9497 36 1 6.1682 -9.5548 0.5052 37 1 4.9223 -8.6080 3.1308 38 1 6.6278 -8.3413 2.6891 39 1 6.0036 -7.0444 0.7428 40 1 5.0580 -6.4146 2.1098 41 1 2.5699 -3.9693 -0.9399 42 1 3.0783 -3.4693 0.7059 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397632692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:21 Heat of formation + Delta-G solvation = -31.136337 kcal Electronic energy + Delta-G solvation = -18295.401259 eV Core-core repulsion = 15659.174172 eV Total energy + Delta-G solvation = -2636.227087 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.27087 -39.33399 -35.92292 -34.27239 -31.83230 -31.56736 -30.14912 -28.24321 -26.32859 -24.40726 -23.84838 -22.35062 -21.61918 -21.30152 -18.98811 -18.44166 -17.11003 -16.59972 -16.08909 -15.81746 -15.60799 -15.27659 -14.89553 -14.60139 -14.50805 -14.10073 -13.82607 -13.53313 -13.41862 -13.23861 -12.93310 -12.82803 -12.58339 -12.30009 -12.28214 -11.96027 -11.84702 -11.75060 -11.65125 -11.36054 -11.25263 -11.00822 -10.59673 -10.49356 -9.65503 -9.39688 -8.60382 -6.33466 1.31822 1.52538 1.61199 1.78892 2.56713 3.06207 3.20285 3.76958 3.78168 3.93420 3.98381 4.05708 4.12139 4.25915 4.36482 4.39981 4.44120 4.45402 4.52100 4.59472 4.67935 4.71644 4.73848 4.82638 4.90596 5.00348 5.02527 5.04577 5.09419 5.10780 5.15158 5.19563 5.31315 5.34656 5.46437 5.59004 5.74218 5.81282 6.12419 6.15064 6.16588 6.22588 6.64912 7.47655 8.78894 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.038956 B = 0.004102 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.594748 B = 6824.426993 C = 7225.764714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.030 4.030 3 Si 1.116 2.884 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.609 4.609 8 H 0.045 0.955 9 C 0.022 3.978 10 H -0.002 1.002 11 C -0.112 4.112 12 C 0.047 3.953 13 N -0.529 5.529 14 C 0.061 3.939 15 C -0.079 4.079 16 C -0.126 4.126 17 C -0.157 4.157 18 C -0.088 4.088 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.086 4.086 22 C 0.066 3.934 23 H 0.262 0.738 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.027 0.973 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.960 -18.799 4.468 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.228 4.228 3 Si 0.938 3.062 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.648 4.648 8 H 0.064 0.936 9 C 0.003 3.997 10 H 0.016 0.984 11 C -0.151 4.151 12 C -0.081 4.081 13 N -0.253 5.253 14 C -0.067 4.067 15 C -0.117 4.117 16 C -0.126 4.126 17 C -0.175 4.175 18 C -0.125 4.125 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.123 4.123 22 C -0.061 4.061 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.045 0.955 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.434 -17.439 4.077 20.242 hybrid contribution 0.195 -0.903 0.432 1.020 sum 9.629 -18.342 4.509 21.201 Atomic orbital electron populations 1.70861 1.07796 1.30559 1.48170 1.27224 0.96647 1.06240 0.92710 0.82941 0.74201 0.71423 0.77616 1.20015 1.20910 1.19662 1.22306 0.94085 0.92784 1.55585 0.93626 1.19703 0.93652 0.93636 0.92679 0.98386 1.22408 0.99035 0.94641 0.99045 1.22786 0.98339 0.93776 0.93210 1.64792 1.20985 1.10519 1.29005 1.22222 0.94484 0.94274 0.95734 1.20671 0.96891 0.96496 0.97640 1.20792 0.97241 0.94303 1.00289 1.22113 1.00114 0.94215 1.01092 1.20472 0.95648 0.95157 1.01222 1.21614 0.96243 0.98030 0.99774 1.21618 1.01772 0.94271 0.97794 1.20445 0.94721 0.98829 0.98269 1.22986 0.94649 0.90270 0.98239 0.92727 0.94254 0.94169 0.93684 0.90011 0.95455 0.90212 0.91295 0.92477 0.88154 0.90360 0.90174 0.90278 0.92054 0.91968 0.90678 0.90862 0.92059 0.91429 0.95146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.61 13.45 21.45 0.29 -57.32 16 2 C -0.03 -1.71 5.34 84.66 0.45 -1.26 16 3 Si 1.12 50.69 29.90 68.60 2.05 52.74 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.61 -34.88 8.40 25.60 0.22 -34.67 16 8 H 0.05 2.58 7.78 -2.91 -0.02 2.55 16 9 C 0.02 1.18 2.57 -10.33 -0.03 1.15 16 10 H 0.00 -0.12 8.01 -2.39 -0.02 -0.14 16 11 C -0.11 -5.41 5.47 31.47 0.17 -5.23 16 12 C 0.05 1.80 6.70 86.45 0.58 2.38 16 13 N -0.53 -20.13 5.35 -882.48 -4.72 -24.85 16 14 C 0.06 1.87 4.83 86.30 0.42 2.28 16 15 C -0.08 -2.20 4.90 29.85 0.15 -2.05 16 16 C -0.13 -2.89 5.09 -15.09 -0.08 -2.97 16 17 C -0.16 -3.23 9.37 27.04 0.25 -2.98 16 18 C -0.09 -1.37 6.11 29.66 0.18 -1.19 16 19 C -0.12 -1.72 6.01 30.73 0.18 -1.53 16 20 C -0.12 -1.91 6.02 30.79 0.19 -1.72 16 21 C -0.09 -1.76 5.80 29.71 0.17 -1.59 16 22 C 0.07 2.88 4.79 86.61 0.41 3.29 16 23 H 0.26 16.23 5.66 -92.71 -0.52 15.70 16 24 H 0.04 2.01 7.84 -2.39 -0.02 1.99 16 25 H 0.04 1.99 7.07 -2.38 -0.02 1.97 16 26 H 0.04 1.61 7.67 -2.39 -0.02 1.59 16 27 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.03 0.86 7.97 -2.38 -0.02 0.84 16 29 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 30 H 0.07 1.97 7.80 -2.39 -0.02 1.95 16 31 H 0.06 1.70 7.16 -2.39 -0.02 1.68 16 32 H 0.10 2.10 7.74 -2.91 -0.02 2.07 16 33 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 37 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 38 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 2.86 7.79 -2.39 -0.02 2.85 16 42 H 0.03 1.34 7.92 -2.38 -0.02 1.32 16 Total: -1.00 -63.27 323.21 2.08 -61.18 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 1.19 Total: 14.33 kcal Atomic # 6 Polarization: -49.35 SS G_CDS: 3.27 Total: -46.08 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -4.43 Total: -82.17 kcal Atomic # 14 Polarization: 50.69 SS G_CDS: 2.05 Total: 52.74 kcal Total: -63.27 2.08 -61.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397632692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.046 kcal (2) G-P(sol) polarization free energy of solvation -63.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds