Wall clock time and date at job start Mon Mar 30 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99763 * 2 1 4 4 H 1.48499 * 109.47028 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47303 * 299.99376 * 3 2 1 6 6 H 1.48500 * 109.47543 * 59.99624 * 3 2 1 7 7 C 1.37870 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99680 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00335 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.35167 * 302.13877 * 9 7 2 11 11 C 1.54588 * 110.31116 * 64.28074 * 9 7 2 12 12 C 1.54939 * 102.92580 * 140.87317 * 11 9 7 13 13 N 1.48537 * 103.22578 * 322.58979 * 12 11 9 14 14 C 1.46903 * 110.99871 * 159.72085 * 13 12 11 15 15 H 1.09001 * 108.84918 * 298.92379 * 14 13 12 16 16 C 1.48671 * 108.87751 * 57.48774 * 14 13 12 17 17 C 1.28219 * 136.20431 * 121.69891 * 16 14 13 18 18 C 1.51378 * 121.75269 * 6.42782 * 17 16 14 19 19 C 1.53689 * 106.87741 * 78.20995 * 18 17 16 20 20 C 1.52568 * 109.54468 * 305.56344 * 19 18 17 21 21 C 1.51515 * 106.60164 * 295.60758 * 20 19 18 22 22 C 1.52705 * 112.94175 * 82.08781 * 21 20 19 23 23 C 1.47901 * 105.82126 * 39.20200 * 13 12 11 24 24 H 0.96994 * 119.99761 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.72560 * 259.23248 * 11 9 7 26 26 H 1.09000 * 110.72340 * 22.51977 * 11 9 7 27 27 H 1.08998 * 110.67030 * 204.14812 * 12 11 9 28 28 H 1.09001 * 110.66437 * 81.01943 * 12 11 9 29 29 H 1.08002 * 111.89775 * 301.66196 * 16 14 13 30 30 H 1.08003 * 119.12720 * 186.45266 * 17 16 14 31 31 H 1.09010 * 109.96690 * 318.87154 * 18 17 16 32 32 H 1.09004 * 110.04783 * 197.60249 * 18 17 16 33 33 H 1.08998 * 109.46200 * 185.53732 * 19 18 17 34 34 H 1.08999 * 109.45824 * 65.58703 * 19 18 17 35 35 H 1.09003 * 110.02230 * 176.33698 * 20 19 18 36 36 H 1.09000 * 110.02470 * 54.88636 * 20 19 18 37 37 H 1.09003 * 108.78440 * 202.97679 * 21 20 19 38 38 H 1.08996 * 108.79343 * 321.19447 * 21 20 19 39 39 H 1.08999 * 109.35638 * 157.70526 * 22 21 20 40 40 H 1.09001 * 109.35360 * 277.28778 * 22 21 20 41 41 H 1.09002 * 109.91857 * 94.02485 * 23 13 12 42 42 H 1.08994 * 109.91811 * 215.32033 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5904 -2.5554 0.8657 11 6 0.4384 -2.6495 -1.3059 12 6 0.6033 -4.1522 -1.6455 13 7 2.0065 -4.4379 -1.2507 14 6 2.2123 -5.8776 -1.0435 15 1 1.5581 -6.2147 -0.2395 16 6 1.8518 -6.5997 -2.2920 17 6 2.4465 -7.3881 -3.1098 18 6 3.8399 -7.9139 -2.8386 19 6 3.6964 -9.0508 -1.8145 20 6 2.9416 -8.5423 -0.5899 21 6 3.8129 -7.4773 0.0443 22 6 3.6710 -6.1138 -0.6285 23 6 2.2346 -3.6841 0.0012 24 1 -0.4849 0.8400 -0.0004 25 1 -0.6104 -2.4049 -1.1381 26 1 0.8592 -2.0273 -2.0957 27 1 0.4613 -4.3234 -2.7126 28 1 -0.0911 -4.7569 -1.0621 29 1 0.8289 -6.4131 -2.5842 30 1 1.9400 -7.6847 -4.0164 31 1 4.4641 -7.1199 -2.4284 32 1 4.2810 -8.2956 -3.7594 33 1 4.6856 -9.3958 -1.5138 34 1 3.1450 -9.8768 -2.2637 35 1 2.7785 -9.3588 0.1136 36 1 1.9866 -8.1123 -0.8921 37 1 3.5398 -7.3803 1.0951 38 1 4.8543 -7.7927 -0.0179 39 1 3.9795 -5.3337 0.0674 40 1 4.3080 -6.0791 -1.5124 41 1 2.0425 -4.3257 0.8612 42 1 3.2599 -3.3156 0.0311 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397644774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:10 Heat of formation + Delta-G solvation = 21.942075 kcal Electronic energy + Delta-G solvation = -19091.973137 eV Core-core repulsion = 16458.047702 eV Total energy + Delta-G solvation = -2633.925435 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.72924 -37.36881 -33.54422 -32.93413 -31.82390 -29.03222 -28.42241 -26.94863 -25.30166 -23.82482 -21.22950 -20.62690 -20.17497 -18.95783 -18.03939 -16.49069 -16.03593 -15.58039 -14.62353 -14.52899 -14.20830 -14.08874 -13.72723 -13.05516 -12.75825 -12.35156 -11.92482 -11.86341 -11.73183 -11.57816 -11.54554 -11.13851 -10.99559 -10.80706 -10.68523 -10.55874 -10.50044 -10.15604 -9.85775 -9.62377 -9.59415 -9.26162 -8.88482 -8.74450 -8.36363 -7.62223 -5.98025 -3.99462 2.47466 3.32710 3.40717 3.45204 4.47738 4.68634 4.71812 4.93223 5.05670 5.09615 5.20818 5.27612 5.35615 5.40173 5.55542 5.65055 5.75711 5.85703 5.93579 5.97956 6.03821 6.04901 6.10811 6.18309 6.21069 6.25918 6.31408 6.37698 6.43997 6.63291 6.65948 6.80562 6.92663 7.15162 7.17659 7.25774 7.51326 7.68548 7.85941 7.94370 8.06832 8.48208 9.02230 9.63861 11.12239 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.041355 B = 0.005020 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.900648 B = 5576.275848 C = 5789.639539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.505 4.505 8 H 0.057 0.943 9 C 0.039 3.961 10 H 0.029 0.971 11 C -0.091 4.091 12 C 0.030 3.970 13 N -0.508 5.508 14 C 0.118 3.882 15 H 0.042 0.958 16 C -0.129 4.129 17 C -0.149 4.149 18 C -0.108 4.108 19 C -0.111 4.111 20 C -0.133 4.133 21 C -0.118 4.118 22 C -0.120 4.120 23 C 0.047 3.953 24 H 0.258 0.742 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.027 0.973 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.019 0.981 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.875 -16.041 -3.119 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.047 0.953 11 C -0.130 4.130 12 C -0.098 4.098 13 N -0.233 5.233 14 C 0.010 3.990 15 H 0.059 0.941 16 C -0.147 4.147 17 C -0.168 4.168 18 C -0.145 4.145 19 C -0.148 4.148 20 C -0.170 4.170 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.080 4.080 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.038 0.962 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.078 -15.750 -3.505 16.916 hybrid contribution -0.334 0.656 0.549 0.919 sum 4.743 -15.094 -2.956 16.095 Atomic orbital electron populations 1.69981 1.05896 1.26293 1.50917 1.24978 0.94836 0.99043 0.95240 0.86566 0.80224 0.83948 0.77451 1.19761 1.21108 1.21179 1.21214 0.92752 0.90161 1.50178 0.92443 1.19504 0.92534 0.91994 0.93961 0.95282 1.22404 1.00176 0.90577 0.99844 1.23340 0.88264 0.99253 0.98937 1.64825 1.23271 1.04339 1.30820 1.20271 0.96292 0.89234 0.93220 0.94066 1.21045 1.00161 0.96848 0.96685 1.21837 0.97202 0.99612 0.98184 1.21313 0.95792 0.98686 0.98696 1.21585 0.99885 0.97445 0.95917 1.21564 1.00361 0.98115 0.96980 1.21265 0.99739 0.95112 0.99463 1.21882 0.96345 0.96375 1.01157 1.23084 1.01725 0.95279 0.87916 0.93205 0.92385 0.92019 0.91902 0.95449 0.90622 0.87634 0.89440 0.92113 0.92221 0.92667 0.92359 0.90106 0.92882 0.92293 0.91099 0.90455 0.96228 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 12.63 55.43 0.70 -25.11 16 2 C 0.06 1.68 5.34 -17.82 -0.10 1.59 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.50 -13.96 8.37 -34.45 -0.29 -14.24 16 8 H 0.06 1.58 7.34 -52.48 -0.39 1.20 16 9 C 0.04 0.98 2.87 -90.42 -0.26 0.72 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.09 -2.17 5.75 -24.87 -0.14 -2.31 16 12 C 0.03 0.58 5.30 -1.89 -0.01 0.57 16 13 N -0.51 -9.89 5.09 -224.74 -1.14 -11.03 16 14 C 0.12 1.88 1.17 -69.58 -0.08 1.80 16 15 H 0.04 0.69 7.41 -51.93 -0.38 0.30 16 16 C -0.13 -1.85 6.20 -36.29 -0.22 -2.08 16 17 C -0.15 -1.86 8.95 -34.99 -0.31 -2.17 16 18 C -0.11 -1.19 5.76 -27.19 -0.16 -1.35 16 19 C -0.11 -1.11 5.48 -26.59 -0.15 -1.25 16 20 C -0.13 -1.47 5.65 -27.70 -0.16 -1.63 16 21 C -0.12 -1.38 5.23 -27.63 -0.14 -1.53 16 22 C -0.12 -1.71 5.00 -26.63 -0.13 -1.84 16 23 C 0.05 1.01 4.98 -2.75 -0.01 0.99 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.06 1.43 8.12 -51.93 -0.42 1.01 16 26 H 0.06 1.58 7.86 -51.93 -0.41 1.17 16 27 H 0.06 1.16 7.60 -51.93 -0.39 0.77 16 28 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 29 H 0.08 1.12 6.74 -52.49 -0.35 0.76 16 30 H 0.11 1.18 8.06 -52.48 -0.42 0.76 16 31 H 0.09 1.04 4.48 -51.92 -0.23 0.81 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.54 7.85 -51.93 -0.41 0.13 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 1.00 4.29 -51.93 -0.22 0.78 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.62 7.62 -51.93 -0.40 0.23 16 39 H 0.07 1.09 6.48 -51.93 -0.34 0.76 16 40 H 0.08 1.09 5.06 -51.93 -0.26 0.83 16 41 H 0.02 0.39 7.66 -51.93 -0.40 0.00 16 42 H 0.07 1.56 7.04 -51.93 -0.37 1.19 16 LS Contribution 305.28 15.07 4.60 4.60 Total: -1.00 -28.13 305.28 -10.09 -38.22 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.06 Total: -0.45 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -2.17 Total: -22.72 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.44 Total: -36.14 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.13 -10.09 -38.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397644774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.165 kcal (2) G-P(sol) polarization free energy of solvation -28.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds