Wall clock time and date at job start Mon Mar 30 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99763 * 2 1 4 4 H 1.48499 * 109.47028 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47303 * 299.99376 * 3 2 1 6 6 H 1.48500 * 109.47543 * 59.99624 * 3 2 1 7 7 C 1.37870 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99680 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00335 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.35167 * 302.13877 * 9 7 2 11 11 C 1.54588 * 110.31116 * 64.28074 * 9 7 2 12 12 C 1.54939 * 102.92580 * 140.87317 * 11 9 7 13 13 N 1.48537 * 103.22578 * 322.58979 * 12 11 9 14 14 C 1.46903 * 110.99871 * 159.72085 * 13 12 11 15 15 H 1.09001 * 108.84918 * 298.92379 * 14 13 12 16 16 C 1.48671 * 108.87751 * 57.48774 * 14 13 12 17 17 C 1.28219 * 136.20431 * 121.69891 * 16 14 13 18 18 C 1.51378 * 121.75269 * 6.42782 * 17 16 14 19 19 C 1.53689 * 106.87741 * 78.20995 * 18 17 16 20 20 C 1.52568 * 109.54468 * 305.56344 * 19 18 17 21 21 C 1.51515 * 106.60164 * 295.60758 * 20 19 18 22 22 C 1.52705 * 112.94175 * 82.08781 * 21 20 19 23 23 C 1.47901 * 105.82126 * 39.20200 * 13 12 11 24 24 H 0.96994 * 119.99761 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.72560 * 259.23248 * 11 9 7 26 26 H 1.09000 * 110.72340 * 22.51977 * 11 9 7 27 27 H 1.08998 * 110.67030 * 204.14812 * 12 11 9 28 28 H 1.09001 * 110.66437 * 81.01943 * 12 11 9 29 29 H 1.08002 * 111.89775 * 301.66196 * 16 14 13 30 30 H 1.08003 * 119.12720 * 186.45266 * 17 16 14 31 31 H 1.09010 * 109.96690 * 318.87154 * 18 17 16 32 32 H 1.09004 * 110.04783 * 197.60249 * 18 17 16 33 33 H 1.08998 * 109.46200 * 185.53732 * 19 18 17 34 34 H 1.08999 * 109.45824 * 65.58703 * 19 18 17 35 35 H 1.09003 * 110.02230 * 176.33698 * 20 19 18 36 36 H 1.09000 * 110.02470 * 54.88636 * 20 19 18 37 37 H 1.09003 * 108.78440 * 202.97679 * 21 20 19 38 38 H 1.08996 * 108.79343 * 321.19447 * 21 20 19 39 39 H 1.08999 * 109.35638 * 157.70526 * 22 21 20 40 40 H 1.09001 * 109.35360 * 277.28778 * 22 21 20 41 41 H 1.09002 * 109.91857 * 94.02485 * 23 13 12 42 42 H 1.08994 * 109.91811 * 215.32033 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5904 -2.5554 0.8657 11 6 0.4384 -2.6495 -1.3059 12 6 0.6033 -4.1522 -1.6455 13 7 2.0065 -4.4379 -1.2507 14 6 2.2123 -5.8776 -1.0435 15 1 1.5581 -6.2147 -0.2395 16 6 1.8518 -6.5997 -2.2920 17 6 2.4465 -7.3881 -3.1098 18 6 3.8399 -7.9139 -2.8386 19 6 3.6964 -9.0508 -1.8145 20 6 2.9416 -8.5423 -0.5899 21 6 3.8129 -7.4773 0.0443 22 6 3.6710 -6.1138 -0.6285 23 6 2.2346 -3.6841 0.0012 24 1 -0.4849 0.8400 -0.0004 25 1 -0.6104 -2.4049 -1.1381 26 1 0.8592 -2.0273 -2.0957 27 1 0.4613 -4.3234 -2.7126 28 1 -0.0911 -4.7569 -1.0621 29 1 0.8289 -6.4131 -2.5842 30 1 1.9400 -7.6847 -4.0164 31 1 4.4641 -7.1199 -2.4284 32 1 4.2810 -8.2956 -3.7594 33 1 4.6856 -9.3958 -1.5138 34 1 3.1450 -9.8768 -2.2637 35 1 2.7785 -9.3588 0.1136 36 1 1.9866 -8.1123 -0.8921 37 1 3.5398 -7.3803 1.0951 38 1 4.8543 -7.7927 -0.0179 39 1 3.9795 -5.3337 0.0674 40 1 4.3080 -6.0791 -1.5124 41 1 2.0425 -4.3257 0.8612 42 1 3.2599 -3.3156 0.0311 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397644774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:09 Heat of formation + Delta-G solvation = 6.569969 kcal Electronic energy + Delta-G solvation = -19092.639722 eV Core-core repulsion = 16458.047702 eV Total energy + Delta-G solvation = -2634.592019 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.95193 -38.82591 -35.28161 -33.94308 -33.44837 -30.62021 -30.02330 -28.05753 -26.88700 -25.48667 -22.40904 -22.06745 -21.44846 -20.57834 -19.17303 -18.55988 -17.36663 -16.60592 -16.46411 -16.08513 -15.44698 -15.21011 -14.95934 -14.47248 -14.39716 -13.85146 -13.44478 -13.21035 -13.16451 -12.96083 -12.68844 -12.64498 -12.54685 -12.38689 -12.18824 -12.01415 -11.70569 -11.60364 -11.50055 -11.20475 -10.88834 -10.82094 -10.61385 -10.51398 -9.96290 -9.16542 -8.13182 -6.21724 1.40349 1.41556 1.42322 1.53994 2.43869 3.17633 3.27193 3.66855 3.96327 4.06739 4.11542 4.14377 4.21532 4.33469 4.40149 4.42978 4.44526 4.51662 4.57772 4.67258 4.82227 4.90698 4.98612 5.04183 5.08426 5.12726 5.16505 5.21967 5.23879 5.32135 5.34245 5.39834 5.50340 5.56795 5.64723 5.71957 5.81885 5.84554 6.10361 6.19916 6.32030 6.40436 6.86607 7.45081 8.96890 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.041355 B = 0.005020 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.900648 B = 5576.275848 C = 5789.639539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.030 3.970 10 H -0.001 1.001 11 C -0.084 4.084 12 C 0.045 3.955 13 N -0.516 5.516 14 C 0.123 3.877 15 H 0.033 0.967 16 C -0.153 4.153 17 C -0.129 4.129 18 C -0.111 4.111 19 C -0.106 4.106 20 C -0.134 4.134 21 C -0.113 4.113 22 C -0.118 4.118 23 C 0.062 3.938 24 H 0.260 0.740 25 H 0.039 0.961 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.028 0.972 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.265 -17.729 -3.963 19.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.561 4.561 8 H 0.072 0.928 9 C 0.011 3.989 10 H 0.017 0.983 11 C -0.122 4.122 12 C -0.083 4.083 13 N -0.240 5.240 14 C 0.015 3.985 15 H 0.051 0.949 16 C -0.172 4.172 17 C -0.148 4.148 18 C -0.147 4.147 19 C -0.144 4.144 20 C -0.171 4.171 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.065 4.065 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.141 0.859 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.046 0.954 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.475 -17.455 -4.349 19.118 hybrid contribution -0.767 1.128 0.796 1.579 sum 5.708 -16.327 -3.553 17.657 Atomic orbital electron populations 1.70099 1.07269 1.27164 1.51600 1.25758 0.95672 1.02453 0.94854 0.85541 0.79140 0.79658 0.77549 1.19072 1.20704 1.20574 1.21525 0.92797 0.91556 1.50224 0.92816 1.19497 0.93044 0.93023 0.93377 0.98299 1.22169 0.98439 0.93278 0.98361 1.23176 0.88910 0.96108 1.00108 1.64796 1.22775 1.06888 1.29588 1.20282 0.97266 0.86796 0.94136 0.94891 1.20870 1.00298 0.99033 0.97012 1.22152 0.97746 0.97375 0.97492 1.21377 0.94618 0.98829 0.99909 1.21562 1.00698 0.97132 0.94986 1.21568 0.99591 0.98112 0.97843 1.21229 1.00975 0.93881 0.98983 1.21877 0.95063 0.97490 1.01074 1.22779 1.00024 0.94288 0.89429 0.93103 0.94258 0.94414 0.90180 0.94552 0.91335 0.85937 0.90357 0.90313 0.90731 0.91636 0.91102 0.91540 0.93200 0.90665 0.92833 0.90126 0.95364 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.67 12.63 21.45 0.27 -54.40 16 2 C 0.01 0.63 5.34 84.65 0.45 1.08 16 3 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.52 -29.65 8.37 25.60 0.21 -29.44 16 8 H 0.05 3.01 7.34 -2.91 -0.02 2.99 16 9 C 0.03 1.55 2.87 -10.66 -0.03 1.52 16 10 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 11 C -0.08 -4.11 5.75 31.80 0.18 -3.93 16 12 C 0.04 1.76 5.30 86.65 0.46 2.22 16 13 N -0.52 -20.02 5.09 -864.93 -4.40 -24.42 16 14 C 0.12 3.81 1.17 43.71 0.05 3.86 16 15 H 0.03 1.08 7.41 -2.39 -0.02 1.07 16 16 C -0.15 -4.16 6.20 27.70 0.17 -3.99 16 17 C -0.13 -2.85 8.95 28.54 0.26 -2.59 16 18 C -0.11 -2.06 5.76 30.30 0.17 -1.89 16 19 C -0.11 -1.74 5.48 30.68 0.17 -1.57 16 20 C -0.13 -2.60 5.65 29.96 0.17 -2.44 16 21 C -0.11 -2.41 5.23 30.01 0.16 -2.26 16 22 C -0.12 -3.21 5.00 30.66 0.15 -3.06 16 23 C 0.06 2.71 4.98 86.45 0.43 3.14 16 24 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 25 H 0.04 2.02 8.12 -2.39 -0.02 2.00 16 26 H 0.04 1.99 7.86 -2.39 -0.02 1.97 16 27 H 0.08 2.90 7.60 -2.39 -0.02 2.88 16 28 H 0.04 1.37 8.00 -2.39 -0.02 1.35 16 29 H 0.07 1.93 6.74 -2.91 -0.02 1.91 16 30 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.08 1.65 4.48 -2.38 -0.01 1.64 16 32 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.07 1.04 7.85 -2.39 -0.02 1.02 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.52 4.29 -2.39 -0.01 1.51 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.38 7.62 -2.39 -0.02 1.36 16 39 H 0.05 1.63 6.48 -2.39 -0.02 1.61 16 40 H 0.08 2.15 5.06 -2.39 -0.01 2.14 16 41 H 0.03 1.16 7.66 -2.39 -0.02 1.14 16 42 H 0.06 2.84 7.04 -2.39 -0.02 2.82 16 Total: -1.00 -61.10 305.28 1.88 -59.22 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.98 Total: 12.30 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 3.01 Total: -39.33 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -4.13 Total: -78.82 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -61.10 1.88 -59.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397644774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.788 kcal (2) G-P(sol) polarization free energy of solvation -61.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds