Wall clock time and date at job start Mon Mar 30 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48495 * 109.47149 * 270.00000 * 3 2 1 5 5 H 1.48506 * 109.46723 * 29.99591 * 3 2 1 6 6 H 1.48499 * 109.47223 * 149.99332 * 3 2 1 7 7 C 1.37882 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99751 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00116 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.76894 * 56.79161 * 9 7 2 11 11 C 1.55147 * 110.70648 * 293.59463 * 9 7 2 12 12 C 1.54900 * 101.65297 * 205.96097 * 11 9 7 13 13 N 1.47850 * 104.79505 * 37.07072 * 12 11 9 14 14 C 1.46902 * 111.00200 * 213.62994 * 13 12 11 15 15 H 1.09004 * 108.85900 * 59.42178 * 14 13 12 16 16 C 1.48673 * 108.88618 * 177.90298 * 14 13 12 17 17 C 1.28236 * 136.18186 * 121.78525 * 16 14 13 18 18 C 1.51375 * 121.78759 * 6.44092 * 17 16 14 19 19 C 1.53699 * 106.86837 * 78.25035 * 18 17 16 20 20 C 1.52572 * 109.50271 * 305.56604 * 19 18 17 21 21 C 1.51526 * 106.57931 * 295.65040 * 20 19 18 22 22 C 1.52683 * 112.98906 * 82.10727 * 21 20 19 23 23 C 1.47443 * 108.57014 * 335.90285 * 13 12 11 24 24 H 0.96991 * 120.00221 * 0.02562 * 1 2 3 25 25 H 1.08990 * 110.98836 * 324.05645 * 11 9 7 26 26 H 1.08999 * 110.98674 * 87.83837 * 11 9 7 27 27 H 1.08994 * 110.38139 * 278.24540 * 12 11 9 28 28 H 1.09006 * 110.37354 * 155.89700 * 12 11 9 29 29 H 1.07992 * 111.91144 * 301.76157 * 16 14 13 30 30 H 1.08003 * 119.10021 * 186.42206 * 17 16 14 31 31 H 1.08996 * 109.97554 * 318.90621 * 18 17 16 32 32 H 1.08996 * 109.96408 * 197.58834 * 18 17 16 33 33 H 1.09002 * 109.46498 * 185.55631 * 19 18 17 34 34 H 1.08998 * 109.46249 * 65.57184 * 19 18 17 35 35 H 1.08999 * 110.03042 * 54.91606 * 20 19 18 36 36 H 1.09000 * 110.02669 * 176.28741 * 20 19 18 37 37 H 1.08996 * 108.78089 * 203.01547 * 21 20 19 38 38 H 1.09004 * 108.77715 * 321.20133 * 21 20 19 39 39 H 1.08995 * 109.35927 * 157.71994 * 22 21 20 40 40 H 1.08998 * 109.35826 * 277.30266 * 22 21 20 41 41 H 1.08996 * 109.88774 * 120.39151 * 23 13 12 42 42 H 1.09000 * 109.88538 * 241.58838 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5748 -2.5550 -0.8525 11 6 0.4733 -2.6835 1.3302 12 6 0.3728 -4.2265 1.4226 13 7 1.6618 -4.7211 0.8936 14 6 1.4857 -5.9954 0.1843 15 1 0.7877 -5.8465 -0.6396 16 6 2.7973 -6.4229 -0.3701 17 6 3.5605 -7.4471 -0.2562 18 6 3.1314 -8.6799 0.5104 19 6 2.1800 -9.4660 -0.4057 20 6 1.0454 -8.5547 -0.8641 21 6 0.2633 -8.1796 0.3784 22 6 0.8951 -7.0271 1.1554 23 6 2.2285 -3.6934 0.0010 24 1 -0.4850 0.8399 -0.0004 25 1 1.0357 -2.2778 2.1710 26 1 -0.5161 -2.2302 1.2697 27 1 -0.4528 -4.5904 0.8111 28 1 0.2439 -4.5370 2.4595 29 1 3.2126 -5.6833 -1.0385 30 1 4.5356 -7.4298 -0.7200 31 1 2.6128 -8.3887 1.4238 32 1 4.0021 -9.2889 0.7534 33 1 1.7668 -10.3135 0.1413 34 1 2.7291 -9.8277 -1.2750 35 1 1.4524 -7.6591 -1.3335 36 1 0.4018 -9.0843 -1.5664 37 1 -0.7462 -7.8928 0.0842 38 1 0.2021 -9.0508 1.0307 39 1 0.1353 -6.5483 1.7730 40 1 1.6871 -7.4147 1.7962 41 1 3.2024 -3.3754 0.3730 42 1 2.3268 -4.0925 -1.0085 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397644778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:13 Heat of formation + Delta-G solvation = 22.210145 kcal Electronic energy + Delta-G solvation = -19092.369910 eV Core-core repulsion = 16458.456099 eV Total energy + Delta-G solvation = -2633.913810 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.75871 -37.37042 -33.49883 -32.94427 -31.82444 -29.01042 -28.48545 -27.00727 -25.21639 -23.86976 -21.31878 -20.58870 -19.89863 -19.35209 -17.86034 -16.49882 -16.10020 -15.50142 -14.67721 -14.54972 -14.29336 -13.86926 -13.72743 -13.19657 -12.55922 -12.33420 -12.22254 -11.78922 -11.67758 -11.60473 -11.43760 -11.13064 -11.02836 -10.91644 -10.74382 -10.58136 -10.46030 -10.21066 -9.81978 -9.68024 -9.59492 -9.21902 -8.85597 -8.83552 -8.37772 -7.51111 -6.01431 -4.03706 2.51536 3.31315 3.38062 3.41873 4.44343 4.69204 4.74138 4.93745 5.05972 5.11272 5.20464 5.28260 5.32157 5.43448 5.55305 5.66366 5.75971 5.85598 5.94798 5.99413 6.03451 6.08571 6.12248 6.15404 6.18804 6.25509 6.37480 6.41305 6.45485 6.58914 6.68382 6.84212 6.91430 7.17702 7.20618 7.23181 7.62003 7.63967 7.86969 7.92420 8.01578 8.43555 8.98137 9.60195 11.08757 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.043870 B = 0.004996 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.093693 B = 5603.194673 C = 5937.626255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.057 0.943 9 C 0.034 3.966 10 H 0.029 0.971 11 C -0.105 4.105 12 C 0.039 3.961 13 N -0.526 5.526 14 C 0.123 3.877 15 H 0.043 0.957 16 C -0.130 4.130 17 C -0.151 4.151 18 C -0.107 4.107 19 C -0.111 4.111 20 C -0.134 4.134 21 C -0.117 4.117 22 C -0.121 4.121 23 C 0.047 3.953 24 H 0.260 0.740 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.032 0.968 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.832 -16.542 0.447 16.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.015 3.985 10 H 0.047 0.953 11 C -0.144 4.144 12 C -0.088 4.088 13 N -0.250 5.250 14 C 0.015 3.985 15 H 0.061 0.939 16 C -0.149 4.149 17 C -0.170 4.170 18 C -0.144 4.144 19 C -0.148 4.148 20 C -0.171 4.171 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.080 4.080 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.016 -16.494 0.847 16.639 hybrid contribution -0.068 1.167 -0.806 1.420 sum 1.948 -15.327 0.041 15.450 Atomic orbital electron populations 1.69957 1.05933 1.26487 1.50581 1.24977 0.94832 0.99064 0.95031 0.86614 0.79947 0.83531 0.78042 1.20758 1.21273 1.19850 1.21080 0.92771 0.90213 1.50726 0.92503 1.19821 0.92864 0.92163 0.93677 0.95286 1.22636 1.01350 0.90211 1.00188 1.23119 0.89434 0.98011 0.98244 1.63697 1.24410 1.02083 1.34799 1.20202 0.92744 0.91069 0.94499 0.93927 1.21147 0.96585 0.97776 0.99361 1.21834 0.98306 0.95167 1.01705 1.21307 0.98872 0.95168 0.99053 1.21591 0.96636 0.97571 0.99048 1.21568 0.97248 1.00730 0.97549 1.21255 0.99084 0.98220 0.96977 1.21904 1.00493 0.95192 0.98190 1.23026 0.99966 0.92069 0.92958 0.93080 0.92487 0.91296 0.94953 0.92064 0.90146 0.87615 0.89567 0.92149 0.92275 0.92616 0.90002 0.92317 0.92895 0.92351 0.91383 0.90497 0.91393 0.94754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 12.48 55.43 0.69 -25.01 16 2 C 0.06 1.74 5.36 -17.82 -0.10 1.65 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.08 8.47 -34.44 -0.29 -14.37 16 8 H 0.06 1.56 7.53 -52.49 -0.40 1.16 16 9 C 0.03 0.86 2.78 -89.95 -0.25 0.61 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.47 5.94 -24.59 -0.15 -2.62 16 12 C 0.04 0.76 5.24 -2.30 -0.01 0.75 16 13 N -0.53 -10.10 5.01 -225.53 -1.13 -11.23 16 14 C 0.12 1.98 1.11 -69.57 -0.08 1.90 16 15 H 0.04 0.74 7.52 -51.93 -0.39 0.35 16 16 C -0.13 -1.95 6.19 -36.29 -0.22 -2.18 16 17 C -0.15 -1.94 8.95 -35.00 -0.31 -2.25 16 18 C -0.11 -1.18 5.76 -27.19 -0.16 -1.34 16 19 C -0.11 -1.12 5.48 -26.59 -0.15 -1.27 16 20 C -0.13 -1.50 5.65 -27.70 -0.16 -1.66 16 21 C -0.12 -1.35 5.23 -27.64 -0.14 -1.50 16 22 C -0.12 -1.64 4.97 -26.64 -0.13 -1.78 16 23 C 0.05 1.01 5.68 -2.83 -0.02 0.99 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.06 1.40 8.04 -51.93 -0.42 0.98 16 26 H 0.07 1.72 7.76 -51.93 -0.40 1.32 16 27 H 0.03 0.61 7.69 -51.93 -0.40 0.21 16 28 H 0.06 1.10 7.81 -51.93 -0.41 0.69 16 29 H 0.08 1.30 6.26 -52.49 -0.33 0.97 16 30 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 31 H 0.09 1.00 4.47 -51.93 -0.23 0.77 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.53 7.85 -51.93 -0.41 0.13 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 1.06 4.29 -51.93 -0.22 0.84 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.60 7.62 -51.93 -0.40 0.20 16 39 H 0.07 0.96 6.34 -51.93 -0.33 0.63 16 40 H 0.08 1.03 5.06 -51.93 -0.26 0.77 16 41 H 0.07 1.53 7.63 -51.93 -0.40 1.13 16 42 H 0.03 0.71 6.17 -51.93 -0.32 0.39 16 LS Contribution 304.29 15.07 4.59 4.59 Total: -1.00 -27.97 304.29 -10.01 -37.99 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.98 Total: 0.34 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -2.16 Total: -23.06 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.44 Total: -36.24 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.97 -10.01 -37.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397644778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.198 kcal (2) G-P(sol) polarization free energy of solvation -27.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds