Wall clock time and date at job start Mon Mar 30 2020 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48495 * 109.47149 * 270.00000 * 3 2 1 5 5 H 1.48506 * 109.46723 * 29.99591 * 3 2 1 6 6 H 1.48499 * 109.47223 * 149.99332 * 3 2 1 7 7 C 1.37882 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99751 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00116 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.76894 * 56.79161 * 9 7 2 11 11 C 1.55147 * 110.70648 * 293.59463 * 9 7 2 12 12 C 1.54900 * 101.65297 * 205.96097 * 11 9 7 13 13 N 1.47850 * 104.79505 * 37.07072 * 12 11 9 14 14 C 1.46902 * 111.00200 * 213.62994 * 13 12 11 15 15 H 1.09004 * 108.85900 * 59.42178 * 14 13 12 16 16 C 1.48673 * 108.88618 * 177.90298 * 14 13 12 17 17 C 1.28236 * 136.18186 * 121.78525 * 16 14 13 18 18 C 1.51375 * 121.78759 * 6.44092 * 17 16 14 19 19 C 1.53699 * 106.86837 * 78.25035 * 18 17 16 20 20 C 1.52572 * 109.50271 * 305.56604 * 19 18 17 21 21 C 1.51526 * 106.57931 * 295.65040 * 20 19 18 22 22 C 1.52683 * 112.98906 * 82.10727 * 21 20 19 23 23 C 1.47443 * 108.57014 * 335.90285 * 13 12 11 24 24 H 0.96991 * 120.00221 * 0.02562 * 1 2 3 25 25 H 1.08990 * 110.98836 * 324.05645 * 11 9 7 26 26 H 1.08999 * 110.98674 * 87.83837 * 11 9 7 27 27 H 1.08994 * 110.38139 * 278.24540 * 12 11 9 28 28 H 1.09006 * 110.37354 * 155.89700 * 12 11 9 29 29 H 1.07992 * 111.91144 * 301.76157 * 16 14 13 30 30 H 1.08003 * 119.10021 * 186.42206 * 17 16 14 31 31 H 1.08996 * 109.97554 * 318.90621 * 18 17 16 32 32 H 1.08996 * 109.96408 * 197.58834 * 18 17 16 33 33 H 1.09002 * 109.46498 * 185.55631 * 19 18 17 34 34 H 1.08998 * 109.46249 * 65.57184 * 19 18 17 35 35 H 1.08999 * 110.03042 * 54.91606 * 20 19 18 36 36 H 1.09000 * 110.02669 * 176.28741 * 20 19 18 37 37 H 1.08996 * 108.78089 * 203.01547 * 21 20 19 38 38 H 1.09004 * 108.77715 * 321.20133 * 21 20 19 39 39 H 1.08995 * 109.35927 * 157.71994 * 22 21 20 40 40 H 1.08998 * 109.35826 * 277.30266 * 22 21 20 41 41 H 1.08996 * 109.88774 * 120.39151 * 23 13 12 42 42 H 1.09000 * 109.88538 * 241.58838 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5748 -2.5550 -0.8525 11 6 0.4733 -2.6835 1.3302 12 6 0.3728 -4.2265 1.4226 13 7 1.6618 -4.7211 0.8936 14 6 1.4857 -5.9954 0.1843 15 1 0.7877 -5.8465 -0.6396 16 6 2.7973 -6.4229 -0.3701 17 6 3.5605 -7.4471 -0.2562 18 6 3.1314 -8.6799 0.5104 19 6 2.1800 -9.4660 -0.4057 20 6 1.0454 -8.5547 -0.8641 21 6 0.2633 -8.1796 0.3784 22 6 0.8951 -7.0271 1.1554 23 6 2.2285 -3.6934 0.0010 24 1 -0.4850 0.8399 -0.0004 25 1 1.0357 -2.2778 2.1710 26 1 -0.5161 -2.2302 1.2697 27 1 -0.4528 -4.5904 0.8111 28 1 0.2439 -4.5370 2.4595 29 1 3.2126 -5.6833 -1.0385 30 1 4.5356 -7.4298 -0.7200 31 1 2.6128 -8.3887 1.4238 32 1 4.0021 -9.2889 0.7534 33 1 1.7668 -10.3135 0.1413 34 1 2.7291 -9.8277 -1.2750 35 1 1.4524 -7.6591 -1.3335 36 1 0.4018 -9.0843 -1.5664 37 1 -0.7462 -7.8928 0.0842 38 1 0.2021 -9.0508 1.0307 39 1 0.1353 -6.5483 1.7730 40 1 1.6871 -7.4147 1.7962 41 1 3.2024 -3.3754 0.3730 42 1 2.3268 -4.0925 -1.0085 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397644778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:12 Heat of formation + Delta-G solvation = 6.959800 kcal Electronic energy + Delta-G solvation = -19093.031214 eV Core-core repulsion = 16458.456099 eV Total energy + Delta-G solvation = -2634.575115 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.00203 -38.82073 -35.26763 -33.97450 -33.42982 -30.59596 -30.09866 -28.14475 -26.75284 -25.56514 -22.51305 -21.91061 -21.39337 -20.82968 -19.04421 -18.56725 -17.43947 -16.58882 -16.49923 -16.08325 -15.51117 -15.17812 -14.88487 -14.44978 -14.38747 -13.93894 -13.53240 -13.16149 -13.11375 -12.96791 -12.69467 -12.66136 -12.56355 -12.46780 -12.24214 -12.01129 -11.71891 -11.61303 -11.50502 -11.15861 -10.95314 -10.87384 -10.60696 -10.50285 -9.96215 -9.09289 -8.16055 -6.25856 1.40012 1.40463 1.40861 1.51678 2.41582 3.15174 3.25623 3.67418 3.96730 4.06990 4.11719 4.13415 4.22706 4.33532 4.36950 4.41462 4.45806 4.52765 4.59363 4.67650 4.85976 4.91065 4.94299 5.03723 5.09182 5.11442 5.17954 5.22261 5.25149 5.31454 5.34010 5.40150 5.51638 5.55650 5.65783 5.70820 5.80524 5.85299 6.08529 6.20225 6.30441 6.37975 6.82429 7.41619 8.93744 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.043870 B = 0.004996 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.093693 B = 5603.194673 C = 5937.626255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.026 3.974 10 H -0.004 1.004 11 C -0.099 4.099 12 C 0.053 3.947 13 N -0.527 5.527 14 C 0.127 3.873 15 H 0.026 0.974 16 C -0.156 4.156 17 C -0.129 4.129 18 C -0.108 4.108 19 C -0.106 4.106 20 C -0.137 4.137 21 C -0.113 4.113 22 C -0.115 4.115 23 C 0.063 3.937 24 H 0.261 0.739 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -18.517 1.052 18.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.006 3.994 10 H 0.014 0.986 11 C -0.137 4.137 12 C -0.075 4.075 13 N -0.251 5.251 14 C 0.019 3.981 15 H 0.043 0.957 16 C -0.174 4.174 17 C -0.148 4.148 18 C -0.144 4.144 19 C -0.144 4.144 20 C -0.174 4.174 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.065 4.065 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.882 -18.487 1.450 18.766 hybrid contribution -0.318 1.727 -1.032 2.037 sum 2.564 -16.760 0.418 16.960 Atomic orbital electron populations 1.70080 1.07314 1.27362 1.51188 1.25770 0.95680 1.02504 0.94568 0.85574 0.78763 0.79181 0.78272 1.20073 1.20763 1.19197 1.21414 0.92886 0.91638 1.50938 0.92802 1.19792 0.93245 0.93110 0.93225 0.98589 1.22424 0.99443 0.93266 0.98597 1.23003 0.89881 0.94780 0.99802 1.63715 1.24042 1.02665 1.34687 1.20228 0.93397 0.90012 0.94425 0.95671 1.20965 0.96836 0.98662 1.00965 1.22141 0.97857 0.94905 0.99869 1.21374 0.99907 0.94426 0.98713 1.21571 0.95947 0.97558 0.99299 1.21576 0.97939 1.00352 0.97528 1.21229 0.98647 0.97997 0.97241 1.21892 1.00498 0.95110 0.97765 1.22725 0.98521 0.91488 0.93768 0.92982 0.93929 0.93508 0.94426 0.89701 0.92242 0.86380 0.89871 0.90204 0.90361 0.91935 0.92039 0.91261 0.93194 0.90240 0.91899 0.89768 0.92474 0.94353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.46 12.48 21.45 0.27 -54.19 16 2 C 0.01 0.78 5.36 84.66 0.45 1.23 16 3 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.53 -30.19 8.47 25.60 0.22 -29.97 16 8 H 0.05 3.02 7.53 -2.91 -0.02 3.00 16 9 C 0.03 1.35 2.78 -10.36 -0.03 1.32 16 10 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 11 C -0.10 -4.79 5.94 31.98 0.19 -4.60 16 12 C 0.05 2.05 5.24 86.77 0.45 2.50 16 13 N -0.53 -20.29 5.01 -867.44 -4.35 -24.64 16 14 C 0.13 4.04 1.11 43.71 0.05 4.09 16 15 H 0.03 0.89 7.52 -2.39 -0.02 0.88 16 16 C -0.16 -4.58 6.19 27.69 0.17 -4.40 16 17 C -0.13 -3.04 8.95 28.53 0.26 -2.79 16 18 C -0.11 -2.00 5.76 30.30 0.17 -1.82 16 19 C -0.11 -1.76 5.48 30.69 0.17 -1.60 16 20 C -0.14 -2.76 5.65 29.97 0.17 -2.59 16 21 C -0.11 -2.33 5.23 30.01 0.16 -2.17 16 22 C -0.12 -2.93 4.97 30.66 0.15 -2.78 16 23 C 0.06 2.78 5.68 86.65 0.49 3.28 16 24 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 25 H 0.04 2.15 8.04 -2.39 -0.02 2.13 16 26 H 0.05 2.44 7.76 -2.39 -0.02 2.42 16 27 H 0.04 1.42 7.69 -2.39 -0.02 1.40 16 28 H 0.08 2.93 7.81 -2.38 -0.02 2.91 16 29 H 0.06 1.96 6.26 -2.91 -0.02 1.94 16 30 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.08 1.65 4.47 -2.39 -0.01 1.64 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.06 7.85 -2.39 -0.02 1.04 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.52 4.29 -2.39 -0.01 1.51 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.33 7.62 -2.38 -0.02 1.31 16 39 H 0.06 1.66 6.34 -2.39 -0.02 1.64 16 40 H 0.08 2.04 5.06 -2.39 -0.01 2.03 16 41 H 0.06 2.64 7.63 -2.39 -0.02 2.63 16 42 H 0.04 1.64 6.17 -2.39 -0.01 1.63 16 Total: -1.00 -61.24 304.29 2.00 -59.24 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.98 Total: 13.46 kcal Atomic # 6 Polarization: -43.38 SS G_CDS: 3.08 Total: -40.31 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -4.08 Total: -78.83 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -61.24 2.00 -59.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397644778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.204 kcal (2) G-P(sol) polarization free energy of solvation -61.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds