Wall clock time and date at job start Mon Mar 30 2020 05:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48499 * 109.47376 * 269.99867 * 3 2 1 5 5 H 1.48496 * 109.47237 * 29.99886 * 3 2 1 6 6 H 1.48499 * 109.47219 * 150.00118 * 3 2 1 7 7 C 1.37880 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99964 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99829 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47012 * 180.02562 * 9 7 2 11 11 C 1.53121 * 109.52292 * 175.00308 * 10 9 7 12 12 C 1.53044 * 109.27719 * 177.62508 * 11 10 9 13 13 N 1.46851 * 109.52033 * 300.81589 * 12 11 10 14 14 C 1.46898 * 110.99844 * 185.84109 * 13 12 11 15 15 C 1.50697 * 109.47199 * 170.00483 * 14 13 12 16 16 C 1.30517 * 124.45236 * 95.02450 * 15 14 13 17 17 C 1.51101 * 111.11153 * 179.97438 * 16 15 14 18 18 C 1.54644 * 104.72102 * 16.43328 * 17 16 15 19 19 C 1.51106 * 124.44552 * 274.99910 * 15 14 13 20 20 C 1.46848 * 111.19591 * 61.74742 * 13 12 11 21 21 C 1.53040 * 109.52234 * 298.25512 * 20 13 12 22 22 H 0.97003 * 120.00436 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47082 * 60.00464 * 9 7 2 24 24 H 1.08997 * 109.47668 * 300.00271 * 9 7 2 25 25 H 1.09001 * 109.52051 * 54.87508 * 10 9 7 26 26 H 1.08999 * 109.50476 * 57.68504 * 11 10 9 27 27 H 1.09000 * 109.53552 * 297.58006 * 11 10 9 28 28 H 1.09004 * 109.46049 * 180.80798 * 12 11 10 29 29 H 1.08992 * 109.45403 * 60.83226 * 12 11 10 30 30 H 1.08999 * 109.46869 * 49.99787 * 14 13 12 31 31 H 1.08998 * 109.46890 * 290.00366 * 14 13 12 32 32 H 1.08002 * 124.44926 * 359.95146 * 16 15 14 33 33 H 1.08998 * 110.39426 * 135.24235 * 17 16 15 34 34 H 1.09002 * 110.38901 * 257.63033 * 17 16 15 35 35 H 1.08992 * 111.03822 * 217.33820 * 18 17 16 36 36 H 1.08996 * 111.03346 * 93.39957 * 18 17 16 37 37 H 1.08997 * 110.38952 * 282.39515 * 19 15 14 38 38 H 1.09009 * 110.38734 * 44.77091 * 19 15 14 39 39 H 1.08999 * 109.46296 * 58.26947 * 20 13 12 40 40 H 1.08995 * 109.46121 * 178.24176 * 20 13 12 41 41 H 1.09005 * 109.50412 * 299.23826 * 21 20 13 42 42 H 1.08998 * 109.50411 * 179.12190 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4850 -4.9852 0.1252 12 6 2.4794 -6.1470 0.0650 13 7 3.2111 -6.1012 -1.2074 14 6 4.0753 -7.2792 -1.3604 15 6 4.6173 -7.3255 -2.7658 16 6 5.7764 -6.8461 -3.1264 17 6 6.0159 -7.0546 -4.6036 18 6 4.6200 -7.3762 -5.1865 19 6 3.8902 -7.9338 -3.9425 20 6 3.9865 -4.8602 -1.3296 21 6 3.0371 -3.6600 -1.3110 22 1 -0.4851 0.8400 0.0004 23 1 0.6240 -2.5566 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.9312 -3.5548 0.8397 26 1 0.7714 -5.0742 -0.6940 27 1 0.9527 -5.0108 1.0760 28 1 1.9398 -7.0911 0.1398 29 1 3.1841 -6.0648 0.8924 30 1 3.4971 -8.1820 -1.1638 31 1 4.9029 -7.2168 -0.6537 32 1 6.4728 -6.3632 -2.4569 33 1 6.4159 -6.1469 -5.0554 34 1 6.6960 -7.8911 -4.7637 35 1 4.6878 -8.1298 -5.9709 36 1 4.1322 -6.4736 -5.5543 37 1 3.9647 -9.0209 -3.9143 38 1 2.8451 -7.6239 -3.9446 39 1 4.6842 -4.7842 -0.4957 40 1 4.5415 -4.8696 -2.2677 41 1 2.3479 -3.7280 -2.1528 42 1 3.6141 -2.7383 -1.3861 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401109768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:26 Heat of formation + Delta-G solvation = -7.725066 kcal Electronic energy + Delta-G solvation = -18475.252147 eV Core-core repulsion = 15840.040249 eV Total energy + Delta-G solvation = -2635.211899 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.32263 -37.92720 -34.47028 -32.34236 -30.44907 -29.87465 -28.46295 -27.47133 -24.85953 -23.07453 -22.45108 -20.93804 -20.46536 -18.86099 -18.01801 -16.23433 -15.89493 -15.58941 -15.10170 -14.62800 -14.43133 -13.72374 -13.46205 -12.95377 -12.86404 -12.73203 -12.32904 -11.94577 -11.87467 -11.58408 -11.35181 -11.25457 -11.12884 -11.05590 -10.98730 -10.74989 -10.58608 -10.54135 -10.21772 -9.89924 -9.48281 -9.00003 -8.84928 -8.73006 -8.29101 -8.00250 -5.94126 -3.95358 2.15309 3.34596 3.40912 3.43930 4.28451 4.50242 4.54071 4.61048 4.98155 5.06469 5.32622 5.37784 5.41177 5.41472 5.46279 5.58551 5.65533 5.66623 5.71670 5.81476 5.86359 5.93316 5.95322 6.01608 6.04831 6.17948 6.19728 6.30884 6.49483 6.52701 6.65268 6.72889 6.91043 7.03988 7.16305 7.25144 7.40509 7.46424 7.74562 7.91684 8.07032 8.50432 9.11244 9.67894 11.17278 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028278 B = 0.004672 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.942315 B = 5991.460953 C = 6525.950259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.111 4.111 12 C 0.060 3.940 13 N -0.530 5.530 14 C 0.099 3.901 15 C -0.114 4.114 16 C -0.173 4.173 17 C -0.096 4.096 18 C -0.125 4.125 19 C -0.089 4.089 20 C 0.054 3.946 21 C -0.098 4.098 22 H 0.259 0.741 23 H 0.016 0.984 24 H 0.014 0.986 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.027 0.973 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.023 0.977 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.348 -16.262 -6.033 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.149 4.149 12 C -0.068 4.068 13 N -0.255 5.255 14 C -0.028 4.028 15 C -0.114 4.114 16 C -0.192 4.192 17 C -0.133 4.133 18 C -0.163 4.163 19 C -0.126 4.126 20 C -0.074 4.074 21 C -0.136 4.136 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.032 0.968 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.042 0.958 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.837 -16.152 -6.397 19.491 hybrid contribution 1.084 1.035 0.748 1.675 sum 9.921 -15.117 -5.649 18.944 Atomic orbital electron populations 1.69965 1.06018 1.26410 1.51225 1.25012 0.94787 0.99091 0.95575 0.86661 0.79867 0.83823 0.78048 1.20729 1.21317 1.19981 1.21259 0.92907 0.91058 1.49948 0.92755 1.19114 0.93630 0.91066 0.97083 1.21239 0.97870 0.94761 0.96165 1.21687 0.97514 0.94266 1.01442 1.22114 0.96267 0.99412 0.89003 1.61919 1.27728 1.01480 1.34368 1.20766 0.95300 0.94452 0.92292 1.21859 0.95424 0.98730 0.95419 1.23111 0.97879 1.01291 0.96905 1.21290 0.97561 1.01228 0.93250 1.22440 0.95602 1.01077 0.97141 1.21231 1.00179 0.99331 0.91883 1.22248 0.95331 0.89832 0.99941 1.21529 0.97819 0.95497 0.98745 0.93126 0.96522 0.96802 0.93152 0.91613 0.92165 0.91682 0.95506 0.90550 0.94687 0.86361 0.91363 0.91204 0.91342 0.90989 0.91260 0.90503 0.95834 0.91172 0.91957 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.52 8.45 -34.44 -0.29 -14.81 16 8 H 0.05 1.50 7.08 -52.49 -0.37 1.13 16 9 C 0.03 0.73 4.45 -27.89 -0.12 0.61 16 10 C -0.08 -1.71 2.20 -90.50 -0.20 -1.91 16 11 C -0.11 -1.98 5.38 -26.65 -0.14 -2.13 16 12 C 0.06 0.90 5.46 -3.83 -0.02 0.88 16 13 N -0.53 -8.01 4.65 -236.11 -1.10 -9.11 16 14 C 0.10 1.25 5.40 -4.98 -0.03 1.22 16 15 C -0.11 -1.35 4.98 -100.73 -0.50 -1.86 16 16 C -0.17 -1.95 9.26 -35.69 -0.33 -2.28 16 17 C -0.10 -0.93 6.81 -26.82 -0.18 -1.11 16 18 C -0.13 -1.21 7.19 -25.01 -0.18 -1.39 16 19 C -0.09 -0.95 6.76 -26.83 -0.18 -1.13 16 20 C 0.05 0.88 5.26 -3.83 -0.02 0.86 16 21 C -0.10 -1.91 5.15 -26.65 -0.14 -2.05 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.86 8.02 -51.93 -0.42 0.44 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.87 7.99 -51.93 -0.41 0.46 16 31 H 0.03 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.90 8.14 -51.92 -0.42 0.47 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 1.09 6.17 -51.93 -0.32 0.77 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.07 1.47 7.06 -51.93 -0.37 1.11 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -29.75 325.77 -10.70 -40.44 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -7.79 Total: -3.00 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -2.44 Total: -23.58 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.36 Total: -35.62 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.75 -10.70 -40.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401109768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.716 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds