Wall clock time and date at job start Mon Mar 30 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48499 * 109.47376 * 269.99867 * 3 2 1 5 5 H 1.48496 * 109.47237 * 29.99886 * 3 2 1 6 6 H 1.48499 * 109.47219 * 150.00118 * 3 2 1 7 7 C 1.37880 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99964 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99829 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47012 * 180.02562 * 9 7 2 11 11 C 1.53121 * 109.52292 * 175.00308 * 10 9 7 12 12 C 1.53044 * 109.27719 * 177.62508 * 11 10 9 13 13 N 1.46851 * 109.52033 * 300.81589 * 12 11 10 14 14 C 1.46898 * 110.99844 * 185.84109 * 13 12 11 15 15 C 1.50697 * 109.47199 * 170.00483 * 14 13 12 16 16 C 1.30517 * 124.45236 * 95.02450 * 15 14 13 17 17 C 1.51101 * 111.11153 * 179.97438 * 16 15 14 18 18 C 1.54644 * 104.72102 * 16.43328 * 17 16 15 19 19 C 1.51106 * 124.44552 * 274.99910 * 15 14 13 20 20 C 1.46848 * 111.19591 * 61.74742 * 13 12 11 21 21 C 1.53040 * 109.52234 * 298.25512 * 20 13 12 22 22 H 0.97003 * 120.00436 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47082 * 60.00464 * 9 7 2 24 24 H 1.08997 * 109.47668 * 300.00271 * 9 7 2 25 25 H 1.09001 * 109.52051 * 54.87508 * 10 9 7 26 26 H 1.08999 * 109.50476 * 57.68504 * 11 10 9 27 27 H 1.09000 * 109.53552 * 297.58006 * 11 10 9 28 28 H 1.09004 * 109.46049 * 180.80798 * 12 11 10 29 29 H 1.08992 * 109.45403 * 60.83226 * 12 11 10 30 30 H 1.08999 * 109.46869 * 49.99787 * 14 13 12 31 31 H 1.08998 * 109.46890 * 290.00366 * 14 13 12 32 32 H 1.08002 * 124.44926 * 359.95146 * 16 15 14 33 33 H 1.08998 * 110.39426 * 135.24235 * 17 16 15 34 34 H 1.09002 * 110.38901 * 257.63033 * 17 16 15 35 35 H 1.08992 * 111.03822 * 217.33820 * 18 17 16 36 36 H 1.08996 * 111.03346 * 93.39957 * 18 17 16 37 37 H 1.08997 * 110.38952 * 282.39515 * 19 15 14 38 38 H 1.09009 * 110.38734 * 44.77091 * 19 15 14 39 39 H 1.08999 * 109.46296 * 58.26947 * 20 13 12 40 40 H 1.08995 * 109.46121 * 178.24176 * 20 13 12 41 41 H 1.09005 * 109.50412 * 299.23826 * 21 20 13 42 42 H 1.08998 * 109.50411 * 179.12190 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4850 -4.9852 0.1252 12 6 2.4794 -6.1470 0.0650 13 7 3.2111 -6.1012 -1.2074 14 6 4.0753 -7.2792 -1.3604 15 6 4.6173 -7.3255 -2.7658 16 6 5.7764 -6.8461 -3.1264 17 6 6.0159 -7.0546 -4.6036 18 6 4.6200 -7.3762 -5.1865 19 6 3.8902 -7.9338 -3.9425 20 6 3.9865 -4.8602 -1.3296 21 6 3.0371 -3.6600 -1.3110 22 1 -0.4851 0.8400 0.0004 23 1 0.6240 -2.5566 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.9312 -3.5548 0.8397 26 1 0.7714 -5.0742 -0.6940 27 1 0.9527 -5.0108 1.0760 28 1 1.9398 -7.0911 0.1398 29 1 3.1841 -6.0648 0.8924 30 1 3.4971 -8.1820 -1.1638 31 1 4.9029 -7.2168 -0.6537 32 1 6.4728 -6.3632 -2.4569 33 1 6.4159 -6.1469 -5.0554 34 1 6.6960 -7.8911 -4.7637 35 1 4.6878 -8.1298 -5.9709 36 1 4.1322 -6.4736 -5.5543 37 1 3.9647 -9.0209 -3.9143 38 1 2.8451 -7.6239 -3.9446 39 1 4.6842 -4.7842 -0.4957 40 1 4.5415 -4.8696 -2.2677 41 1 2.3479 -3.7280 -2.1528 42 1 3.6141 -2.7383 -1.3861 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401109768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:25 Heat of formation + Delta-G solvation = -23.546670 kcal Electronic energy + Delta-G solvation = -18475.938223 eV Core-core repulsion = 15840.040249 eV Total energy + Delta-G solvation = -2635.897975 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44096 -39.04316 -36.10770 -34.28648 -31.81510 -31.16790 -29.44119 -28.92834 -26.36323 -24.63276 -23.85994 -22.23435 -21.57594 -20.43059 -18.90117 -18.42658 -17.04013 -16.52925 -16.49566 -16.04850 -15.77822 -15.15012 -14.95140 -14.58803 -14.20757 -13.83086 -13.67471 -13.45960 -13.21723 -13.03763 -12.69032 -12.58494 -12.48395 -12.29265 -12.11011 -12.00732 -11.96759 -11.90038 -11.83595 -11.62752 -11.26485 -10.87209 -10.70651 -10.52178 -9.61906 -9.16090 -8.17277 -6.26990 1.27160 1.39128 1.40350 1.51121 2.41663 3.12577 3.16378 3.71473 3.77898 4.04295 4.04626 4.09241 4.23665 4.25164 4.39900 4.49468 4.53869 4.61302 4.65966 4.70932 4.78062 4.84508 4.90454 4.95594 4.95797 5.07776 5.08812 5.14128 5.16068 5.25306 5.37676 5.40999 5.42669 5.44585 5.57313 5.68704 5.80812 5.88960 6.02158 6.21132 6.25171 6.31356 6.88932 7.41329 8.94746 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028278 B = 0.004672 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.942315 B = 5991.460953 C = 6525.950259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.034 3.966 10 C -0.075 4.075 11 C -0.107 4.107 12 C 0.067 3.933 13 N -0.541 5.541 14 C 0.101 3.899 15 C -0.131 4.131 16 C -0.173 4.173 17 C -0.096 4.096 18 C -0.125 4.125 19 C -0.089 4.089 20 C 0.068 3.932 21 C -0.092 4.092 22 H 0.262 0.738 23 H -0.013 1.013 24 H -0.013 1.013 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.033 0.967 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.027 0.973 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.217 -17.340 -6.378 21.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.003 4.003 10 C -0.094 4.094 11 C -0.145 4.145 12 C -0.061 4.061 13 N -0.266 5.266 14 C -0.025 4.025 15 C -0.132 4.132 16 C -0.193 4.193 17 C -0.133 4.133 18 C -0.162 4.162 19 C -0.126 4.126 20 C -0.060 4.060 21 C -0.130 4.130 22 H 0.071 0.929 23 H 0.005 0.995 24 H 0.005 0.995 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.051 0.949 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.138 0.862 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.045 0.955 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.719 -17.249 -6.743 21.399 hybrid contribution 0.468 1.357 0.848 1.667 sum 11.187 -15.892 -5.896 20.309 Atomic orbital electron populations 1.70103 1.07795 1.27561 1.52158 1.25949 0.95690 1.03191 0.95032 0.85517 0.78722 0.78809 0.78440 1.19863 1.20821 1.18784 1.21641 0.93320 0.92167 1.49681 0.92295 1.19003 0.93991 0.93056 0.94253 1.21092 0.96912 0.94479 0.96879 1.21599 0.97831 0.93819 1.01209 1.22043 0.95803 0.98964 0.89276 1.61868 1.28412 1.01860 1.34425 1.20808 0.95225 0.93553 0.92945 1.21956 0.95966 0.99761 0.95488 1.23330 0.97683 1.00383 0.97870 1.21332 0.97833 1.01997 0.92143 1.22457 0.95334 1.01123 0.97283 1.21243 0.99239 1.00200 0.91901 1.22022 0.94372 0.89063 1.00559 1.21394 0.97765 0.96699 0.97132 0.92926 0.99475 0.99510 0.93478 0.92729 0.91823 0.89082 0.94879 0.89086 0.94171 0.86234 0.91104 0.89633 0.89489 0.92122 0.89832 0.91956 0.95469 0.90320 0.93561 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.22 13.29 21.45 0.28 -57.93 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.53 -30.65 8.45 25.60 0.22 -30.43 16 8 H 0.06 3.28 7.08 -2.91 -0.02 3.26 16 9 C 0.03 1.85 4.45 29.85 0.13 1.98 16 10 C -0.07 -3.20 2.20 -10.71 -0.02 -3.22 16 11 C -0.11 -3.79 5.38 30.65 0.16 -3.62 16 12 C 0.07 1.87 5.46 86.33 0.47 2.34 16 13 N -0.54 -15.38 4.65 -900.93 -4.19 -19.56 16 14 C 0.10 2.29 5.40 85.56 0.46 2.75 16 15 C -0.13 -2.84 4.98 -15.86 -0.08 -2.92 16 16 C -0.17 -3.53 9.26 26.27 0.24 -3.29 16 17 C -0.10 -1.63 6.81 30.53 0.21 -1.43 16 18 C -0.12 -2.16 7.19 31.71 0.23 -1.93 16 19 C -0.09 -1.72 6.76 30.53 0.21 -1.52 16 20 C 0.07 2.12 5.26 86.33 0.45 2.57 16 21 C -0.09 -3.63 5.15 30.65 0.16 -3.47 16 22 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 23 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 24 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 25 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.09 2.13 8.02 -2.39 -0.02 2.11 16 29 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.79 7.99 -2.39 -0.02 1.77 16 31 H 0.04 0.88 8.10 -2.39 -0.02 0.86 16 32 H 0.12 2.37 8.06 -2.91 -0.02 2.34 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 2.34 6.17 -2.39 -0.01 2.33 16 41 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.05 2.29 7.06 -2.39 -0.02 2.27 16 Total: -1.00 -64.57 325.77 2.37 -62.20 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.94 Total: 9.94 kcal Atomic # 6 Polarization: -45.09 SS G_CDS: 3.30 Total: -41.79 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -3.90 Total: -77.50 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -64.57 2.37 -62.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401109768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.655 kcal (2) G-P(sol) polarization free energy of solvation -64.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds