Wall clock time and date at job start Mon Mar 30 2020 06:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99878 * 2 1 4 4 H 1.48504 * 109.46820 * 269.99986 * 3 2 1 5 5 H 1.48501 * 109.46921 * 29.99479 * 3 2 1 6 6 H 1.48494 * 109.47060 * 149.99607 * 3 2 1 7 7 C 1.37878 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99637 * 0.02562 * 7 2 1 10 10 N 1.46909 * 109.46767 * 184.84427 * 9 7 2 11 11 C 1.46905 * 110.99996 * 285.62591 * 10 9 7 12 12 C 1.52994 * 109.46966 * 170.00080 * 11 10 9 13 13 H 1.08999 * 109.76266 * 54.55248 * 12 11 10 14 14 C 1.53297 * 109.61670 * 294.09842 * 12 11 10 15 15 C 1.53788 * 107.93350 * 165.19555 * 14 12 11 16 16 C 1.52714 * 109.66634 * 55.96870 * 15 14 12 17 17 H 1.08996 * 115.38876 * 126.98340 * 16 15 14 18 18 C 1.53646 * 115.14850 * 268.38453 * 16 15 14 19 19 C 1.52067 * 120.52249 * 336.72492 * 16 15 14 20 20 H 1.09002 * 115.93114 * 151.10947 * 19 16 15 21 21 C 1.52066 * 120.02150 * 6.38630 * 19 16 15 22 22 C 1.46900 * 110.99824 * 161.67420 * 10 9 7 23 23 C 1.52995 * 117.50046 * 10.30467 * 22 10 9 24 24 C 1.52998 * 60.00185 * 252.51692 * 23 22 10 25 25 H 0.96993 * 120.00540 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46961 * 64.85004 * 9 7 2 27 27 H 1.08991 * 109.47291 * 304.84479 * 9 7 2 28 28 H 1.08996 * 109.47214 * 49.99924 * 11 10 9 29 29 H 1.09000 * 109.46770 * 290.00303 * 11 10 9 30 30 H 1.09003 * 109.62015 * 285.55260 * 14 12 11 31 31 H 1.08999 * 109.61923 * 46.09902 * 14 12 11 32 32 H 1.09001 * 111.06324 * 294.98384 * 15 14 12 33 33 H 1.09001 * 108.00733 * 175.06430 * 15 14 12 34 34 H 1.09002 * 117.54074 * 4.69477 * 18 16 15 35 35 H 1.09001 * 117.53873 * 219.45119 * 18 16 15 36 36 H 1.09009 * 109.27084 * 218.03263 * 21 19 16 37 37 H 1.09002 * 109.27054 * 98.57299 * 21 19 16 38 38 H 1.08991 * 115.55155 * 156.02048 * 22 10 9 39 39 H 1.09001 * 117.50201 * 0.02562 * 23 22 10 40 40 H 1.09000 * 117.50340 * 145.02631 * 23 22 10 41 41 H 1.08998 * 117.49535 * 252.51201 * 24 23 22 42 42 H 1.08998 * 117.52351 * 107.48646 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2015 -3.6132 0.1181 11 6 2.9195 -3.8282 -1.1453 12 6 4.0647 -4.8171 -0.9191 13 1 3.6777 -5.7336 -0.4737 14 6 5.1078 -4.1919 0.0143 15 6 6.0309 -5.3161 0.5134 16 6 6.6435 -6.0461 -0.6800 17 1 7.7304 -6.1275 -0.6703 18 6 5.8524 -7.2666 -1.1750 19 6 5.9595 -6.0160 -2.0378 20 1 6.6155 -6.1027 -2.9040 21 6 4.7361 -5.1391 -2.2542 22 6 1.5222 -4.8409 0.5531 23 6 -0.0077 -4.8346 0.5677 24 6 0.7701 -4.7982 1.8848 25 1 -0.4850 0.8399 -0.0004 26 1 0.6915 -2.5956 -0.9299 27 1 0.5606 -2.5200 0.8436 28 1 3.3232 -2.8798 -1.4998 29 1 2.2327 -4.2315 -1.8894 30 1 5.6815 -3.4408 -0.5288 31 1 4.6073 -3.7295 0.8650 32 1 5.4827 -6.0284 1.1300 33 1 6.8253 -4.8618 1.1056 34 1 4.8924 -7.4711 -0.7010 35 1 6.4207 -8.1434 -1.4856 36 1 4.0274 -5.6624 -2.8963 37 1 5.0401 -4.2104 -2.7371 38 1 2.0194 -5.7732 0.2856 39 1 -0.5103 -3.9195 0.2543 40 1 -0.5174 -5.7629 0.3097 41 1 0.7721 -5.7026 2.4932 42 1 0.7796 -3.8593 2.4383 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403254932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:55 Heat of formation + Delta-G solvation = 39.265072 kcal Electronic energy + Delta-G solvation = -18997.786463 eV Core-core repulsion = 16364.612209 eV Total energy + Delta-G solvation = -2633.174253 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.60065 -37.90587 -34.29802 -32.96882 -31.43882 -30.59814 -27.24291 -25.12078 -23.52235 -22.62636 -21.69323 -21.59837 -20.65548 -18.73394 -18.15879 -16.65948 -15.92386 -15.27320 -14.77618 -14.38871 -14.00539 -13.92540 -13.61841 -13.24728 -12.62531 -12.30356 -12.13115 -11.98002 -11.81518 -11.52617 -11.26421 -10.97886 -10.84845 -10.76151 -10.70021 -10.43760 -10.25280 -10.03842 -9.90318 -9.75262 -9.63488 -9.41777 -9.41476 -9.08431 -8.39884 -7.04318 -6.00524 -4.01344 3.32794 3.39209 3.43650 3.82604 4.39795 4.49380 4.75048 4.82496 4.93139 4.98290 5.23481 5.28194 5.35289 5.48594 5.55793 5.59121 5.62277 5.73722 5.75682 5.79571 5.90141 5.96641 6.05448 6.16102 6.21396 6.21488 6.24454 6.33818 6.39924 6.42259 6.59538 6.61903 6.66521 6.82659 6.89745 6.96136 7.31542 7.35613 7.84338 8.14644 8.25966 8.57730 9.06403 9.62557 11.10119 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.020496 B = 0.006600 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.794446 B = 4241.374651 C = 5081.333511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.189 3.811 10 N -0.500 5.500 11 C 0.070 3.930 12 C -0.083 4.083 13 H 0.064 0.936 14 C -0.106 4.106 15 C -0.089 4.089 16 C -0.145 4.145 17 H 0.095 0.905 18 C -0.190 4.190 19 C -0.134 4.134 20 H 0.092 0.908 21 C -0.085 4.085 22 C 0.027 3.973 23 C -0.227 4.227 24 C -0.176 4.176 25 H 0.260 0.740 26 H -0.010 1.010 27 H 0.039 0.961 28 H 0.082 0.918 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.872 -12.397 -1.636 15.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.064 3.936 10 N -0.221 5.221 11 C -0.058 4.058 12 C -0.102 4.102 13 H 0.083 0.917 14 C -0.144 4.144 15 C -0.127 4.127 16 C -0.163 4.163 17 H 0.113 0.887 18 C -0.227 4.227 19 C -0.152 4.152 20 H 0.110 0.890 21 C -0.123 4.123 22 C -0.083 4.083 23 C -0.267 4.267 24 C -0.214 4.214 25 H 0.070 0.930 26 H 0.008 0.992 27 H 0.057 0.943 28 H 0.100 0.900 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.083 -12.123 -1.282 15.202 hybrid contribution -0.243 0.610 -0.651 0.924 sum 8.840 -11.513 -1.932 14.643 Atomic orbital electron populations 1.69947 1.06032 1.26704 1.51269 1.24969 0.94829 0.99214 0.95572 0.86536 0.79866 0.83265 0.77996 1.20805 1.21325 1.19768 1.21172 0.93526 0.89889 1.49611 0.91909 1.19849 0.90552 0.87178 0.96013 1.61973 1.28502 1.02852 1.28797 1.21983 0.94101 0.99113 0.90621 1.21253 0.95555 0.98492 0.94876 0.91730 1.21700 0.95930 0.96414 1.00317 1.21256 0.98809 0.97491 0.95109 1.22266 0.97615 1.00859 0.95605 0.88686 1.23127 1.02176 0.91811 1.05548 1.21790 0.99971 0.99506 0.93961 0.88983 1.20888 0.94845 0.98694 0.97864 1.22645 0.90333 0.95038 1.00320 1.23568 0.97134 1.03023 1.02939 1.22963 1.04858 1.02550 0.90997 0.92988 0.99230 0.94302 0.89992 0.96214 0.92280 0.89668 0.91768 0.92368 0.88818 0.89656 0.92068 0.91382 0.87913 0.87578 0.90310 0.89813 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.50 -13.97 8.58 -34.44 -0.30 -14.27 16 8 H 0.06 1.73 7.57 -52.49 -0.40 1.33 16 9 C 0.19 4.82 3.38 -4.97 -0.02 4.81 16 10 N -0.50 -10.49 3.97 -228.09 -0.91 -11.39 16 11 C 0.07 1.31 4.19 -3.82 -0.02 1.30 16 12 C -0.08 -1.25 1.88 -90.54 -0.17 -1.42 16 13 H 0.06 0.97 5.22 -51.93 -0.27 0.70 16 14 C -0.11 -1.62 5.30 -26.17 -0.14 -1.76 16 15 C -0.09 -1.14 5.83 -26.47 -0.15 -1.29 16 16 C -0.15 -1.69 6.22 -90.91 -0.57 -2.26 16 17 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 18 C -0.19 -2.10 9.61 -26.75 -0.26 -2.36 16 19 C -0.13 -1.58 6.00 -91.92 -0.55 -2.13 16 20 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 21 C -0.09 -1.12 5.22 -27.27 -0.14 -1.26 16 22 C 0.03 0.49 5.82 -67.72 -0.39 0.10 16 23 C -0.23 -4.13 9.56 -26.73 -0.26 -4.39 16 24 C -0.18 -3.09 9.91 -26.73 -0.27 -3.36 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H -0.01 -0.28 7.83 -51.93 -0.41 -0.68 16 27 H 0.04 1.06 5.63 -51.93 -0.29 0.77 16 28 H 0.08 1.69 7.21 -51.93 -0.37 1.32 16 29 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.06 0.92 8.04 -51.93 -0.42 0.50 16 31 H 0.08 1.51 7.49 -51.93 -0.39 1.12 16 32 H 0.06 0.81 8.04 -51.93 -0.42 0.40 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.09 7.26 -51.93 -0.38 0.71 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.68 6.30 -51.93 -0.33 1.35 16 39 H 0.11 2.24 6.02 -51.93 -0.31 1.93 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.10 1.93 7.48 -51.93 -0.39 1.54 16 LS Contribution 320.72 15.07 4.83 4.83 Total: -1.00 -28.39 320.72 -10.99 -39.38 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.31 Total: 3.28 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -3.32 Total: -26.83 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -0.17 Total: -37.28 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.39 -10.99 -39.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403254932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.645 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds