Wall clock time and date at job start Mon Mar 30 2020 06:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00154 * 2 1 4 4 H 1.48507 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47196 * 300.00142 * 3 2 1 6 6 H 1.48504 * 109.47120 * 60.00528 * 3 2 1 7 7 C 1.37884 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00012 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.87920 * 62.38894 * 9 7 2 11 11 C 1.55143 * 110.99277 * 298.54321 * 9 7 2 12 12 C 1.54318 * 103.02086 * 206.21552 * 11 9 7 13 13 N 1.47446 * 107.22949 * 22.28645 * 12 11 9 14 14 C 1.46902 * 110.99971 * 123.25535 * 13 12 11 15 15 C 1.53002 * 109.47166 * 75.59626 * 14 13 12 16 16 H 1.08998 * 109.61855 * 304.94718 * 15 14 13 17 17 C 1.53304 * 109.61992 * 184.58207 * 15 14 13 18 18 C 1.52759 * 108.64548 * 166.00553 * 17 15 14 19 19 C 1.52069 * 110.64863 * 54.61007 * 18 17 15 20 20 H 1.09007 * 114.64005 * 193.27430 * 19 18 17 21 21 C 1.52304 * 119.84158 * 49.67287 * 19 18 17 22 22 C 1.52069 * 120.02209 * 338.41959 * 19 18 17 23 23 H 1.09003 * 117.25553 * 215.56286 * 22 19 18 24 24 C 1.52710 * 120.51928 * 5.28956 * 22 19 18 25 25 C 1.47840 * 108.57278 * 0.98576 * 13 12 11 26 26 H 0.96999 * 119.99745 * 359.97438 * 1 2 3 27 27 H 1.09002 * 110.70049 * 87.83740 * 11 9 7 28 28 H 1.08998 * 110.85274 * 324.67479 * 11 9 7 29 29 H 1.08994 * 109.88888 * 262.87946 * 12 11 9 30 30 H 1.08998 * 109.88427 * 141.68571 * 12 11 9 31 31 H 1.09003 * 109.46948 * 315.60062 * 14 13 12 32 32 H 1.08999 * 109.47483 * 195.59729 * 14 13 12 33 33 H 1.09000 * 109.61678 * 285.56413 * 17 15 14 34 34 H 1.09001 * 109.61593 * 46.09917 * 17 15 14 35 35 H 1.09004 * 109.10945 * 294.36004 * 18 17 15 36 36 H 1.08999 * 109.26606 * 174.96162 * 18 17 15 37 37 H 1.08997 * 117.53891 * 142.80135 * 21 19 18 38 38 H 1.09003 * 117.53602 * 357.55793 * 21 19 18 39 39 H 1.09004 * 109.35481 * 218.31643 * 24 22 19 40 40 H 1.08995 * 109.35705 * 98.73268 * 24 22 19 41 41 H 1.09006 * 110.37547 * 94.73023 * 25 13 12 42 42 H 1.08991 * 110.37721 * 217.07911 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6483 -2.5989 -0.9045 11 6 0.3732 -2.6352 1.2703 12 6 0.2521 -4.1634 1.4472 13 7 1.3904 -4.7768 0.7386 14 6 2.1836 -5.6175 1.6453 15 6 1.4409 -6.9298 1.9046 16 1 0.4396 -6.7158 2.2783 17 6 2.2096 -7.7607 2.9385 18 6 1.2988 -8.8796 3.4406 19 6 0.7639 -9.6987 2.2763 20 1 -0.0619 -10.3635 2.5299 21 6 1.7228 -10.2269 1.2175 22 6 0.7322 -9.1026 0.8777 23 1 -0.1068 -9.3756 0.2376 24 6 1.3439 -7.7301 0.6056 25 6 2.2178 -3.6993 0.1554 26 1 -0.4850 0.8401 0.0004 27 1 -0.6075 -2.1867 1.1115 28 1 0.8663 -2.1853 2.1319 29 1 -0.6856 -4.5135 1.0156 30 1 0.2935 -4.4185 2.5061 31 1 2.3344 -5.0928 2.5887 32 1 3.1506 -5.8312 1.1898 33 1 3.0952 -8.1944 2.4741 34 1 2.5051 -7.1244 3.7727 35 1 0.4630 -8.4416 3.9863 36 1 1.8631 -9.5301 4.1088 37 1 1.5232 -11.2160 0.8053 38 1 2.7753 -9.9597 1.3125 39 1 0.7184 -7.1903 -0.1054 40 1 2.3409 -7.8561 0.1836 41 1 3.0356 -3.4421 0.8288 42 1 2.6066 -4.0032 -0.8164 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403633598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:31 Heat of formation + Delta-G solvation = 2.687849 kcal Electronic energy + Delta-G solvation = -18644.964917 eV Core-core repulsion = 16010.204556 eV Total energy + Delta-G solvation = -2634.760361 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73069 -37.86764 -34.23377 -32.61019 -31.10374 -29.45436 -28.17331 -25.88394 -24.47118 -23.46113 -21.28711 -21.12343 -19.63218 -19.45763 -18.26741 -16.43471 -16.19220 -15.11636 -14.78113 -14.46569 -14.05953 -13.87379 -13.58937 -13.31509 -12.61237 -12.39397 -12.34826 -12.12773 -11.82857 -11.53512 -11.23778 -11.08071 -10.95507 -10.89236 -10.75593 -10.52034 -10.38457 -10.25097 -9.95962 -9.67938 -9.57157 -9.55133 -9.17297 -8.80610 -8.38479 -7.52978 -6.01398 -4.04665 3.29289 3.37407 3.41208 3.73278 4.41822 4.55045 4.72158 4.78771 4.83354 5.03215 5.19972 5.27096 5.31363 5.36409 5.56519 5.64658 5.70096 5.72501 5.82898 5.90941 5.94381 6.01161 6.05380 6.11063 6.20438 6.23113 6.25155 6.30612 6.41685 6.53941 6.56164 6.64139 6.65723 6.88551 7.18255 7.23210 7.67639 7.76532 7.82554 7.93868 8.04154 8.44395 8.97683 9.59607 11.08189 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.054658 B = 0.004158 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.151892 B = 6732.593179 C = 6749.439852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.048 3.952 10 H 0.036 0.964 11 C -0.116 4.116 12 C 0.039 3.961 13 N -0.532 5.532 14 C 0.057 3.943 15 C -0.077 4.077 16 H 0.071 0.929 17 C -0.118 4.118 18 C -0.086 4.086 19 C -0.141 4.141 20 H 0.092 0.908 21 C -0.190 4.190 22 C -0.142 4.142 23 H 0.097 0.903 24 C -0.073 4.073 25 C 0.046 3.954 26 H 0.259 0.741 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.030 0.970 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.034 0.966 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.953 -16.879 5.103 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.029 3.971 10 H 0.054 0.946 11 C -0.155 4.155 12 C -0.088 4.088 13 N -0.256 5.256 14 C -0.072 4.072 15 C -0.096 4.096 16 H 0.089 0.911 17 C -0.156 4.156 18 C -0.123 4.123 19 C -0.160 4.160 20 H 0.111 0.889 21 C -0.227 4.227 22 C -0.160 4.160 23 H 0.115 0.885 24 C -0.110 4.110 25 C -0.081 4.081 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.623 -17.090 4.702 17.799 hybrid contribution 0.694 1.356 0.711 1.681 sum 2.317 -15.735 5.413 16.800 Atomic orbital electron populations 1.69981 1.05881 1.26331 1.50441 1.24969 0.94838 0.99018 0.95018 0.86569 0.80158 0.83908 0.77554 1.19807 1.20998 1.21098 1.21096 0.92811 0.90396 1.50978 0.92604 1.19728 0.92193 0.91123 0.94048 0.94604 1.22671 1.02108 0.90966 0.99797 1.22918 0.94081 0.96654 0.95167 1.63546 1.09205 1.21304 1.31500 1.22275 0.96374 0.93516 0.94998 1.21130 0.99460 0.93908 0.95113 0.91081 1.21637 0.98307 0.96833 0.98816 1.20787 0.99136 0.96412 0.95965 1.21785 1.01374 1.02026 0.90773 0.88935 1.23122 0.96701 0.98420 1.04410 1.22340 1.00675 0.95173 0.97814 0.88486 1.20945 1.00563 0.91900 0.97622 1.23154 0.96044 0.91378 0.97477 0.93125 0.90970 0.93585 0.92122 0.94689 0.95199 0.91859 0.92081 0.91904 0.91634 0.91978 0.89503 0.88936 0.90221 0.92237 0.94802 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 12.12 55.43 0.67 -24.88 16 2 C 0.06 1.76 5.34 -17.81 -0.10 1.67 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.51 -14.20 8.55 -34.44 -0.29 -14.49 16 8 H 0.06 1.52 7.79 -52.48 -0.41 1.12 16 9 C 0.05 1.22 2.96 -89.63 -0.26 0.95 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.12 -2.76 5.64 -24.91 -0.14 -2.90 16 12 C 0.04 0.78 6.24 -2.83 -0.02 0.76 16 13 N -0.53 -10.03 4.69 -231.25 -1.08 -11.12 16 14 C 0.06 0.90 3.96 -3.82 -0.02 0.89 16 15 C -0.08 -1.03 2.20 -90.52 -0.20 -1.23 16 16 H 0.07 1.03 7.39 -51.93 -0.38 0.64 16 17 C -0.12 -1.32 5.05 -26.70 -0.13 -1.46 16 18 C -0.09 -0.87 5.92 -27.33 -0.16 -1.03 16 19 C -0.14 -1.46 6.00 -91.92 -0.55 -2.01 16 20 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 21 C -0.19 -1.90 9.67 -26.75 -0.26 -2.16 16 22 C -0.14 -1.60 6.19 -90.90 -0.56 -2.17 16 23 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 24 C -0.07 -0.95 4.96 -26.94 -0.13 -1.08 16 25 C 0.05 1.00 6.08 -2.30 -0.01 0.98 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.07 1.84 7.53 -51.93 -0.39 1.45 16 28 H 0.05 1.13 8.04 -51.93 -0.42 0.72 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 31 H 0.03 0.49 7.73 -51.93 -0.40 0.09 16 32 H 0.06 0.97 7.99 -51.93 -0.42 0.55 16 33 H 0.06 0.67 7.13 -51.93 -0.37 0.30 16 34 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.93 7.28 -51.93 -0.38 0.56 16 39 H 0.08 1.17 7.92 -51.93 -0.41 0.76 16 40 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 41 H 0.03 0.73 7.70 -51.93 -0.40 0.33 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 319.66 15.07 4.82 4.82 Total: -1.00 -27.70 319.66 -11.16 -38.86 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.70 Total: -0.70 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -2.84 Total: -23.27 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.41 Total: -36.00 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.70 -11.16 -38.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403633598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.547 kcal (2) G-P(sol) polarization free energy of solvation -27.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds