Wall clock time and date at job start Mon Mar 30 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00154 * 2 1 4 4 H 1.48507 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47196 * 300.00142 * 3 2 1 6 6 H 1.48504 * 109.47120 * 60.00528 * 3 2 1 7 7 C 1.37884 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00012 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.87920 * 62.38894 * 9 7 2 11 11 C 1.55143 * 110.99277 * 298.54321 * 9 7 2 12 12 C 1.54318 * 103.02086 * 206.21552 * 11 9 7 13 13 N 1.47446 * 107.22949 * 22.28645 * 12 11 9 14 14 C 1.46902 * 110.99971 * 123.25535 * 13 12 11 15 15 C 1.53002 * 109.47166 * 75.59626 * 14 13 12 16 16 H 1.08998 * 109.61855 * 304.94718 * 15 14 13 17 17 C 1.53304 * 109.61992 * 184.58207 * 15 14 13 18 18 C 1.52759 * 108.64548 * 166.00553 * 17 15 14 19 19 C 1.52069 * 110.64863 * 54.61007 * 18 17 15 20 20 H 1.09007 * 114.64005 * 193.27430 * 19 18 17 21 21 C 1.52304 * 119.84158 * 49.67287 * 19 18 17 22 22 C 1.52069 * 120.02209 * 338.41959 * 19 18 17 23 23 H 1.09003 * 117.25553 * 215.56286 * 22 19 18 24 24 C 1.52710 * 120.51928 * 5.28956 * 22 19 18 25 25 C 1.47840 * 108.57278 * 0.98576 * 13 12 11 26 26 H 0.96999 * 119.99745 * 359.97438 * 1 2 3 27 27 H 1.09002 * 110.70049 * 87.83740 * 11 9 7 28 28 H 1.08998 * 110.85274 * 324.67479 * 11 9 7 29 29 H 1.08994 * 109.88888 * 262.87946 * 12 11 9 30 30 H 1.08998 * 109.88427 * 141.68571 * 12 11 9 31 31 H 1.09003 * 109.46948 * 315.60062 * 14 13 12 32 32 H 1.08999 * 109.47483 * 195.59729 * 14 13 12 33 33 H 1.09000 * 109.61678 * 285.56413 * 17 15 14 34 34 H 1.09001 * 109.61593 * 46.09917 * 17 15 14 35 35 H 1.09004 * 109.10945 * 294.36004 * 18 17 15 36 36 H 1.08999 * 109.26606 * 174.96162 * 18 17 15 37 37 H 1.08997 * 117.53891 * 142.80135 * 21 19 18 38 38 H 1.09003 * 117.53602 * 357.55793 * 21 19 18 39 39 H 1.09004 * 109.35481 * 218.31643 * 24 22 19 40 40 H 1.08995 * 109.35705 * 98.73268 * 24 22 19 41 41 H 1.09006 * 110.37547 * 94.73023 * 25 13 12 42 42 H 1.08991 * 110.37721 * 217.07911 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6483 -2.5989 -0.9045 11 6 0.3732 -2.6352 1.2703 12 6 0.2521 -4.1634 1.4472 13 7 1.3904 -4.7768 0.7386 14 6 2.1836 -5.6175 1.6453 15 6 1.4409 -6.9298 1.9046 16 1 0.4396 -6.7158 2.2783 17 6 2.2096 -7.7607 2.9385 18 6 1.2988 -8.8796 3.4406 19 6 0.7639 -9.6987 2.2763 20 1 -0.0619 -10.3635 2.5299 21 6 1.7228 -10.2269 1.2175 22 6 0.7322 -9.1026 0.8777 23 1 -0.1068 -9.3756 0.2376 24 6 1.3439 -7.7301 0.6056 25 6 2.2178 -3.6993 0.1554 26 1 -0.4850 0.8401 0.0004 27 1 -0.6075 -2.1867 1.1115 28 1 0.8663 -2.1853 2.1319 29 1 -0.6856 -4.5135 1.0156 30 1 0.2935 -4.4185 2.5061 31 1 2.3344 -5.0928 2.5887 32 1 3.1506 -5.8312 1.1898 33 1 3.0952 -8.1944 2.4741 34 1 2.5051 -7.1244 3.7727 35 1 0.4630 -8.4416 3.9863 36 1 1.8631 -9.5301 4.1088 37 1 1.5232 -11.2160 0.8053 38 1 2.7753 -9.9597 1.3125 39 1 0.7184 -7.1903 -0.1054 40 1 2.3409 -7.8561 0.1836 41 1 3.0356 -3.4421 0.8288 42 1 2.6066 -4.0032 -0.8164 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403633598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:30 Heat of formation + Delta-G solvation = -11.010840 kcal Electronic energy + Delta-G solvation = -18645.558937 eV Core-core repulsion = 16010.204556 eV Total energy + Delta-G solvation = -2635.354380 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.74047 -39.41552 -35.68218 -34.31053 -32.23729 -30.95166 -29.98265 -27.31882 -26.01591 -24.71275 -22.55248 -21.97952 -21.47331 -20.99258 -19.22932 -18.44760 -17.09191 -16.78821 -16.55889 -16.09659 -15.23976 -14.81993 -14.70970 -14.55100 -14.25322 -14.01958 -13.69184 -13.46890 -13.03877 -12.97471 -12.95527 -12.74922 -12.40827 -12.24391 -12.13569 -12.08007 -11.59320 -11.54104 -11.47124 -11.21940 -11.02339 -10.87581 -10.53537 -10.49734 -10.41503 -9.10539 -8.14720 -6.25644 1.39454 1.41136 1.52742 2.41460 2.92225 3.15161 3.21372 3.71842 3.90256 3.95664 4.09228 4.15825 4.21859 4.27839 4.33912 4.44936 4.53031 4.58289 4.66371 4.73308 4.80642 4.83183 4.88353 4.92339 4.98530 5.00321 5.07006 5.14435 5.25273 5.27587 5.32556 5.36191 5.41833 5.46925 5.56131 5.58874 5.60153 5.81214 5.91504 6.08921 6.36865 6.38364 6.83964 7.42428 8.94516 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.054658 B = 0.004158 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.151892 B = 6732.593179 C = 6749.439852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.038 3.962 10 H 0.003 0.997 11 C -0.108 4.108 12 C 0.052 3.948 13 N -0.530 5.530 14 C 0.057 3.943 15 C -0.070 4.070 16 H 0.061 0.939 17 C -0.113 4.113 18 C -0.085 4.085 19 C -0.139 4.139 20 H 0.103 0.897 21 C -0.180 4.180 22 C -0.159 4.159 23 H 0.098 0.902 24 C -0.068 4.068 25 C 0.060 3.940 26 H 0.261 0.739 27 H 0.046 0.954 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.032 0.968 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.951 -18.246 6.108 19.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.073 0.927 9 C 0.019 3.981 10 H 0.021 0.979 11 C -0.147 4.147 12 C -0.076 4.076 13 N -0.254 5.254 14 C -0.071 4.071 15 C -0.089 4.089 16 H 0.079 0.921 17 C -0.151 4.151 18 C -0.122 4.122 19 C -0.157 4.157 20 H 0.121 0.879 21 C -0.217 4.217 22 C -0.177 4.177 23 H 0.116 0.884 24 C -0.106 4.106 25 C -0.068 4.068 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.628 -18.475 5.710 19.515 hybrid contribution 0.372 1.768 0.370 1.844 sum 3.000 -16.707 6.080 18.031 Atomic orbital electron populations 1.70106 1.07289 1.27226 1.51045 1.25773 0.95683 1.02495 0.94588 0.85525 0.79096 0.79522 0.77632 1.19030 1.20543 1.20598 1.21431 0.92974 0.91747 1.51110 0.92744 1.19690 0.92939 0.92244 0.93270 0.97899 1.22461 1.00078 0.93771 0.98370 1.22779 0.94725 0.93534 0.96529 1.63558 1.09072 1.20249 1.32526 1.22393 0.96650 0.93971 0.94132 1.21053 0.98868 0.92947 0.96037 0.92068 1.21599 0.98406 0.96940 0.98185 1.20804 0.99115 0.96202 0.96109 1.21884 1.01797 1.01808 0.90255 0.87867 1.23170 0.96446 0.98365 1.03686 1.22278 1.01539 0.94689 0.99164 0.88397 1.20841 1.00140 0.92748 0.96845 1.22923 0.95243 0.90594 0.98031 0.93021 0.93506 0.95044 0.91663 0.92695 0.95351 0.91140 0.91551 0.91499 0.91569 0.90316 0.88225 0.88859 0.92476 0.92361 0.94921 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.96 12.12 21.45 0.26 -53.70 16 2 C 0.01 0.77 5.34 84.66 0.45 1.22 16 3 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.53 -30.00 8.55 25.60 0.22 -29.78 16 8 H 0.05 2.99 7.79 -2.91 -0.02 2.97 16 9 C 0.04 1.96 2.96 -10.15 -0.03 1.93 16 10 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 11 C -0.11 -5.23 5.64 31.78 0.18 -5.05 16 12 C 0.05 2.03 6.24 86.65 0.54 2.57 16 13 N -0.53 -19.75 4.69 -885.54 -4.15 -23.90 16 14 C 0.06 1.71 3.96 86.30 0.34 2.05 16 15 C -0.07 -1.75 2.20 -10.73 -0.02 -1.78 16 16 H 0.06 1.67 7.39 -2.39 -0.02 1.65 16 17 C -0.11 -2.25 5.05 30.62 0.15 -2.10 16 18 C -0.09 -1.47 5.92 30.21 0.18 -1.29 16 19 C -0.14 -2.49 6.00 -11.64 -0.07 -2.56 16 20 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 21 C -0.18 -3.12 9.67 30.58 0.30 -2.83 16 22 C -0.16 -3.31 6.19 -10.98 -0.07 -3.37 16 23 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 24 C -0.07 -1.69 4.96 30.46 0.15 -1.54 16 25 C 0.06 2.56 6.08 86.78 0.53 3.09 16 26 H 0.26 14.53 8.31 -92.71 -0.77 13.75 16 27 H 0.05 2.47 7.53 -2.39 -0.02 2.45 16 28 H 0.03 1.57 8.04 -2.39 -0.02 1.55 16 29 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.05 1.93 7.20 -2.39 -0.02 1.91 16 31 H 0.03 0.88 7.73 -2.39 -0.02 0.86 16 32 H 0.07 2.04 7.99 -2.39 -0.02 2.02 16 33 H 0.07 1.26 7.13 -2.39 -0.02 1.25 16 34 H 0.07 1.29 8.05 -2.39 -0.02 1.27 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 1.62 7.28 -2.39 -0.02 1.60 16 39 H 0.06 1.66 7.92 -2.38 -0.02 1.64 16 40 H 0.06 1.43 8.06 -2.39 -0.02 1.41 16 41 H 0.03 1.40 7.70 -2.38 -0.02 1.38 16 42 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -59.55 319.66 1.93 -57.62 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.95 Total: 13.44 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: 2.85 Total: -39.44 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -3.89 Total: -77.60 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -59.55 1.93 -57.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403633598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.606 kcal (2) G-P(sol) polarization free energy of solvation -59.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds