Wall clock time and date at job start Mon Mar 30 2020 06:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99856 * 2 1 4 4 H 1.48501 * 109.46976 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47130 * 299.99976 * 3 2 1 6 6 H 1.48493 * 109.47103 * 60.00112 * 3 2 1 7 7 C 1.37883 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99548 * 173.38738 * 7 2 1 9 9 C 1.50695 * 119.99731 * 353.38560 * 7 2 1 10 10 C 1.52999 * 115.55183 * 84.91243 * 9 7 2 11 11 N 1.46903 * 109.46835 * 39.52820 * 10 9 7 12 12 C 1.46904 * 110.99692 * 185.42967 * 11 10 9 13 13 C 1.53003 * 109.46644 * 180.02562 * 12 11 10 14 14 H 1.08993 * 109.61954 * 55.36497 * 13 12 11 15 15 C 1.53298 * 109.61977 * 294.99781 * 13 12 11 16 16 C 1.52868 * 108.59032 * 165.83422 * 15 13 12 17 17 C 1.52067 * 110.51731 * 54.88895 * 16 15 13 18 18 H 1.08999 * 114.64074 * 194.37167 * 17 16 15 19 19 C 1.52311 * 119.83888 * 49.55455 * 17 16 15 20 20 C 1.52070 * 120.02127 * 338.30338 * 17 16 15 21 21 H 1.09003 * 117.25544 * 216.66442 * 20 17 16 22 22 C 1.52715 * 120.52168 * 5.28636 * 20 17 16 23 23 C 1.53003 * 117.51951 * 230.60951 * 9 7 2 24 24 C 1.53001 * 117.50085 * 299.23974 * 9 7 2 25 25 H 0.96999 * 120.00579 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47386 * 279.53208 * 10 9 7 27 27 H 1.09003 * 109.47608 * 159.52949 * 10 9 7 28 28 H 1.00904 * 110.99831 * 61.47819 * 11 10 9 29 29 H 1.08993 * 109.47456 * 60.00315 * 12 11 10 30 30 H 1.08998 * 109.47414 * 299.99762 * 12 11 10 31 31 H 1.09006 * 109.61533 * 285.56242 * 15 13 12 32 32 H 1.09001 * 109.61484 * 46.09750 * 15 13 12 33 33 H 1.09000 * 109.26684 * 175.15568 * 16 15 13 34 34 H 1.09000 * 109.26554 * 294.65254 * 16 15 13 35 35 H 1.08995 * 117.53376 * 357.55534 * 19 17 16 36 36 H 1.09003 * 117.53708 * 142.80190 * 19 17 16 37 37 H 1.09005 * 109.35210 * 218.32379 * 22 20 17 38 38 H 1.08996 * 109.35178 * 98.73832 * 22 20 17 39 39 H 1.09000 * 117.50118 * 214.97353 * 23 9 7 40 40 H 1.09004 * 117.49531 * 359.97438 * 23 9 7 41 41 H 1.09003 * 117.49906 * 359.97438 * 24 9 7 42 42 H 1.09004 * 117.49775 * 144.99929 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1971 -0.1082 9 6 1.2585 -2.4948 0.1492 10 6 0.6890 -3.0816 -1.1439 11 7 1.6529 -2.8882 -2.2355 12 6 1.0881 -3.3234 -3.5198 13 6 2.1190 -3.1075 -4.6296 14 1 3.0455 -3.6211 -4.3733 15 6 2.3905 -1.6079 -4.7954 16 6 3.6544 -1.4316 -5.6370 17 6 3.5231 -2.1738 -6.9577 18 1 4.4590 -2.3031 -7.5013 19 6 2.2773 -1.9839 -7.8132 20 6 2.5296 -3.3172 -7.0924 21 1 2.8269 -4.1671 -7.7068 22 6 1.5736 -3.6527 -5.9497 23 6 1.7564 -3.4771 1.2114 24 6 0.4548 -2.7044 1.4341 25 1 -0.4851 0.8400 -0.0004 26 1 -0.2454 -2.5779 -1.3909 27 1 0.5026 -4.1470 -1.0084 28 1 2.5200 -3.3663 -2.0412 29 1 0.1919 -2.7428 -3.7381 30 1 0.8310 -4.3812 -3.4640 31 1 1.5465 -1.1368 -5.2993 32 1 2.5362 -1.1520 -3.8161 33 1 3.8100 -0.3710 -5.8344 34 1 4.5100 -1.8244 -5.0877 35 1 1.4901 -1.3401 -7.4210 36 1 2.4074 -1.9634 -8.8953 37 1 1.4643 -4.7348 -5.8762 38 1 0.5999 -3.2060 -6.1505 39 1 1.6783 -4.5413 0.9889 40 1 2.6241 -3.1827 1.8019 41 1 0.4659 -1.9016 2.1713 42 1 -0.4798 -3.2603 1.3581 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403823032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:39 Heat of formation + Delta-G solvation = 30.013669 kcal Electronic energy + Delta-G solvation = -18701.846134 eV Core-core repulsion = 16068.270710 eV Total energy + Delta-G solvation = -2633.575424 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.52806 -36.95101 -35.05563 -32.09678 -31.71016 -30.72565 -26.54930 -25.18804 -24.05424 -22.97672 -21.11626 -21.05348 -20.52535 -18.94113 -18.23080 -16.19312 -15.88130 -14.94320 -14.40913 -14.24544 -14.04277 -13.71684 -13.55978 -13.25529 -13.02198 -12.35560 -12.12874 -11.85020 -11.67102 -11.56641 -11.19879 -10.99425 -10.87874 -10.61582 -10.47547 -10.42409 -10.35813 -10.05447 -9.97863 -9.63706 -9.46728 -9.32354 -8.72391 -8.25258 -7.94917 -7.30609 -5.85198 -3.84838 3.38916 3.47099 3.50857 3.79130 4.55743 4.67512 4.82106 4.91863 4.99575 5.25570 5.27420 5.42032 5.44530 5.48371 5.59780 5.66187 5.80862 5.85819 5.91118 6.00936 6.04501 6.09502 6.17807 6.22078 6.26760 6.35941 6.40750 6.48441 6.52584 6.59376 6.68336 6.78546 6.81314 6.95371 7.03804 7.17110 7.53295 7.55496 8.06483 8.14481 8.36323 8.65338 9.11288 9.77116 11.25626 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.006245 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.009677 B = 4482.364058 C = 5333.969931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.072 3.928 3 Si 0.884 3.116 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.458 4.458 8 H 0.057 0.943 9 C 0.049 3.951 10 C 0.110 3.890 11 N -0.655 5.655 12 C 0.064 3.936 13 C -0.078 4.078 14 H 0.067 0.933 15 C -0.112 4.112 16 C -0.090 4.090 17 C -0.136 4.136 18 H 0.091 0.909 19 C -0.186 4.186 20 C -0.147 4.147 21 H 0.095 0.905 22 C -0.084 4.084 23 C -0.219 4.219 24 C -0.159 4.159 25 H 0.254 0.746 26 H 0.068 0.932 27 H -0.009 1.009 28 H 0.329 0.671 29 H 0.065 0.935 30 H 0.011 0.989 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.667 -6.089 -11.789 13.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.130 4.130 3 Si 0.713 3.287 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.215 1.215 7 C -0.496 4.496 8 H 0.075 0.925 9 C 0.048 3.952 10 C -0.019 4.019 11 N -0.284 5.284 12 C -0.065 4.065 13 C -0.097 4.097 14 H 0.085 0.915 15 C -0.149 4.149 16 C -0.127 4.127 17 C -0.155 4.155 18 H 0.109 0.891 19 C -0.222 4.222 20 C -0.165 4.165 21 H 0.114 0.886 22 C -0.122 4.122 23 C -0.256 4.256 24 C -0.197 4.197 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.009 0.991 28 H 0.146 0.854 29 H 0.083 0.917 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.331 -5.296 -11.888 13.434 hybrid contribution 0.336 -0.085 -0.007 0.346 sum 3.667 -5.381 -11.895 13.561 Atomic orbital electron populations 1.70015 1.05794 1.25736 1.50732 1.24848 0.94622 0.98431 0.95052 0.86667 0.80303 0.84528 0.77207 1.19900 1.21295 1.21508 1.20170 0.92487 0.88229 1.48758 0.92512 1.18918 0.97073 0.93813 0.85411 1.21449 0.95319 0.93634 0.91517 1.60188 1.06135 1.61559 1.00492 1.21946 0.97458 0.96446 0.90700 1.21117 0.98509 0.96872 0.93229 0.91484 1.21601 0.96276 0.95711 1.01346 1.20888 0.99255 0.99205 0.93357 1.21855 0.93786 1.01203 0.98618 0.89099 1.23113 1.00801 1.00587 0.97745 1.22187 1.02020 0.91910 1.00423 0.88648 1.21075 0.97536 1.00320 0.93255 1.23080 0.98478 0.95420 1.08654 1.22483 0.92005 1.01140 1.04091 0.93608 0.91334 0.99142 0.85411 0.91669 0.97091 0.92807 0.88777 0.91965 0.91611 0.88628 0.89567 0.92162 0.91770 0.92210 0.90628 0.90148 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.32 12.95 55.43 0.72 -24.60 16 2 C 0.07 1.98 5.39 -17.82 -0.10 1.89 16 3 Si 0.88 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.46 -12.33 8.15 -34.44 -0.28 -12.61 16 8 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 9 C 0.05 1.18 1.74 -155.66 -0.27 0.91 16 10 C 0.11 2.45 5.76 -3.82 -0.02 2.43 16 11 N -0.65 -13.03 5.07 -113.78 -0.58 -13.61 16 12 C 0.06 1.07 5.08 -3.82 -0.02 1.06 16 13 C -0.08 -1.12 2.31 -90.52 -0.21 -1.33 16 14 H 0.07 0.97 8.04 -51.93 -0.42 0.55 16 15 C -0.11 -1.71 5.02 -26.64 -0.13 -1.85 16 16 C -0.09 -1.18 5.93 -27.27 -0.16 -1.34 16 17 C -0.14 -1.60 6.00 -91.92 -0.55 -2.15 16 18 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 19 C -0.19 -2.07 9.66 -26.74 -0.26 -2.33 16 20 C -0.15 -1.68 6.19 -90.90 -0.56 -2.25 16 21 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 22 C -0.08 -1.04 5.12 -26.94 -0.14 -1.17 16 23 C -0.22 -4.80 9.88 -26.73 -0.26 -5.06 16 24 C -0.16 -3.78 9.48 -26.73 -0.25 -4.03 16 25 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.07 1.69 8.13 -51.93 -0.42 1.27 16 27 H -0.01 -0.20 7.94 -51.93 -0.41 -0.61 16 28 H 0.33 6.26 8.79 -39.29 -0.35 5.92 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.05 0.83 7.11 -51.93 -0.37 0.46 16 32 H 0.09 1.74 7.45 -51.93 -0.39 1.36 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.10 1.14 7.26 -51.93 -0.38 0.76 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 39 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 40 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 41 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 331.15 15.07 4.99 4.99 Total: -1.00 -27.58 331.15 -10.88 -38.45 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.76 Total: 6.08 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -3.22 Total: -27.84 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.14 Total: -38.21 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.58 -10.88 -38.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403823032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.467 kcal (2) G-P(sol) polarization free energy of solvation -27.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds