Wall clock time and date at job start Mon Mar 30 2020 06:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99856 * 2 1 4 4 H 1.48501 * 109.46976 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47130 * 299.99976 * 3 2 1 6 6 H 1.48493 * 109.47103 * 60.00112 * 3 2 1 7 7 C 1.37883 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99548 * 173.38738 * 7 2 1 9 9 C 1.50695 * 119.99731 * 353.38560 * 7 2 1 10 10 C 1.52999 * 115.55183 * 84.91243 * 9 7 2 11 11 N 1.46903 * 109.46835 * 39.52820 * 10 9 7 12 12 C 1.46904 * 110.99692 * 185.42967 * 11 10 9 13 13 C 1.53003 * 109.46644 * 180.02562 * 12 11 10 14 14 H 1.08993 * 109.61954 * 55.36497 * 13 12 11 15 15 C 1.53298 * 109.61977 * 294.99781 * 13 12 11 16 16 C 1.52868 * 108.59032 * 165.83422 * 15 13 12 17 17 C 1.52067 * 110.51731 * 54.88895 * 16 15 13 18 18 H 1.08999 * 114.64074 * 194.37167 * 17 16 15 19 19 C 1.52311 * 119.83888 * 49.55455 * 17 16 15 20 20 C 1.52070 * 120.02127 * 338.30338 * 17 16 15 21 21 H 1.09003 * 117.25544 * 216.66442 * 20 17 16 22 22 C 1.52715 * 120.52168 * 5.28636 * 20 17 16 23 23 C 1.53003 * 117.51951 * 230.60951 * 9 7 2 24 24 C 1.53001 * 117.50085 * 299.23974 * 9 7 2 25 25 H 0.96999 * 120.00579 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47386 * 279.53208 * 10 9 7 27 27 H 1.09003 * 109.47608 * 159.52949 * 10 9 7 28 28 H 1.00904 * 110.99831 * 61.47819 * 11 10 9 29 29 H 1.08993 * 109.47456 * 60.00315 * 12 11 10 30 30 H 1.08998 * 109.47414 * 299.99762 * 12 11 10 31 31 H 1.09006 * 109.61533 * 285.56242 * 15 13 12 32 32 H 1.09001 * 109.61484 * 46.09750 * 15 13 12 33 33 H 1.09000 * 109.26684 * 175.15568 * 16 15 13 34 34 H 1.09000 * 109.26554 * 294.65254 * 16 15 13 35 35 H 1.08995 * 117.53376 * 357.55534 * 19 17 16 36 36 H 1.09003 * 117.53708 * 142.80190 * 19 17 16 37 37 H 1.09005 * 109.35210 * 218.32379 * 22 20 17 38 38 H 1.08996 * 109.35178 * 98.73832 * 22 20 17 39 39 H 1.09000 * 117.50118 * 214.97353 * 23 9 7 40 40 H 1.09004 * 117.49531 * 359.97438 * 23 9 7 41 41 H 1.09003 * 117.49906 * 359.97438 * 24 9 7 42 42 H 1.09004 * 117.49775 * 144.99929 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1971 -0.1082 9 6 1.2585 -2.4948 0.1492 10 6 0.6890 -3.0816 -1.1439 11 7 1.6529 -2.8882 -2.2355 12 6 1.0881 -3.3234 -3.5198 13 6 2.1190 -3.1075 -4.6296 14 1 3.0455 -3.6211 -4.3733 15 6 2.3905 -1.6079 -4.7954 16 6 3.6544 -1.4316 -5.6370 17 6 3.5231 -2.1738 -6.9577 18 1 4.4590 -2.3031 -7.5013 19 6 2.2773 -1.9839 -7.8132 20 6 2.5296 -3.3172 -7.0924 21 1 2.8269 -4.1671 -7.7068 22 6 1.5736 -3.6527 -5.9497 23 6 1.7564 -3.4771 1.2114 24 6 0.4548 -2.7044 1.4341 25 1 -0.4851 0.8400 -0.0004 26 1 -0.2454 -2.5779 -1.3909 27 1 0.5026 -4.1470 -1.0084 28 1 2.5200 -3.3663 -2.0412 29 1 0.1919 -2.7428 -3.7381 30 1 0.8310 -4.3812 -3.4640 31 1 1.5465 -1.1368 -5.2993 32 1 2.5362 -1.1520 -3.8161 33 1 3.8100 -0.3710 -5.8344 34 1 4.5100 -1.8244 -5.0877 35 1 1.4901 -1.3401 -7.4210 36 1 2.4074 -1.9634 -8.8953 37 1 1.4643 -4.7348 -5.8762 38 1 0.5999 -3.2060 -6.1505 39 1 1.6783 -4.5413 0.9889 40 1 2.6241 -3.1827 1.8019 41 1 0.4659 -1.9016 2.1713 42 1 -0.4798 -3.2603 1.3581 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403823032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:38 Heat of formation + Delta-G solvation = 16.897806 kcal Electronic energy + Delta-G solvation = -18702.414880 eV Core-core repulsion = 16068.270710 eV Total energy + Delta-G solvation = -2634.144171 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.56425 -38.72488 -36.48041 -33.85660 -33.38134 -31.81304 -28.09874 -27.12550 -25.23065 -24.45160 -22.87478 -22.10608 -21.74417 -20.83825 -19.31790 -17.90121 -17.09401 -16.68150 -16.22300 -15.68675 -15.54689 -14.88882 -14.79803 -14.71742 -14.56453 -13.84624 -13.52291 -13.19534 -13.11605 -12.95181 -12.86928 -12.70696 -12.55722 -12.30494 -12.05105 -11.96087 -11.62061 -11.58789 -11.34238 -11.02337 -10.70569 -10.57609 -10.43910 -10.29585 -9.84618 -8.87246 -7.96720 -6.00140 1.42418 1.45825 1.55021 2.51998 2.88329 3.34436 3.41502 3.61576 3.73780 3.93392 3.96059 4.16085 4.18986 4.37044 4.41866 4.47021 4.54122 4.59849 4.70844 4.76922 4.79442 4.83392 4.89225 4.92504 4.95565 5.01641 5.02696 5.07068 5.15893 5.27667 5.30672 5.34543 5.43031 5.44139 5.60840 5.65448 5.66984 5.71473 5.92333 6.43487 6.63166 6.86164 7.02037 7.63830 9.13495 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.006245 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.009677 B = 4482.364058 C = 5333.969931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.460 4.460 8 H 0.048 0.952 9 C 0.020 3.980 10 C 0.124 3.876 11 N -0.668 5.668 12 C 0.069 3.931 13 C -0.069 4.069 14 H 0.071 0.929 15 C -0.109 4.109 16 C -0.087 4.087 17 C -0.141 4.141 18 H 0.108 0.892 19 C -0.184 4.184 20 C -0.146 4.146 21 H 0.115 0.885 22 C -0.081 4.081 23 C -0.190 4.190 24 C -0.168 4.168 25 H 0.252 0.748 26 H 0.035 0.965 27 H 0.009 0.991 28 H 0.335 0.665 29 H 0.046 0.954 30 H 0.027 0.973 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.876 -7.445 -13.142 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.172 4.172 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.498 4.498 8 H 0.066 0.934 9 C 0.019 3.981 10 C -0.006 4.006 11 N -0.298 5.298 12 C -0.061 4.061 13 C -0.088 4.088 14 H 0.090 0.910 15 C -0.146 4.146 16 C -0.124 4.124 17 C -0.159 4.159 18 H 0.127 0.873 19 C -0.221 4.221 20 C -0.164 4.164 21 H 0.133 0.867 22 C -0.119 4.119 23 C -0.227 4.227 24 C -0.206 4.206 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.027 0.973 28 H 0.153 0.847 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.556 -6.659 -13.242 15.507 hybrid contribution -0.040 0.326 0.440 0.549 sum 4.517 -6.333 -12.802 14.980 Atomic orbital electron populations 1.70122 1.06907 1.26067 1.52242 1.25455 0.95276 1.01175 0.95310 0.85822 0.79486 0.81290 0.76870 1.19258 1.21555 1.21358 1.20370 0.92182 0.89611 1.47633 0.93416 1.19074 0.98162 0.94168 0.86712 1.21150 0.94225 0.93930 0.91271 1.60072 1.06118 1.62582 1.01044 1.21942 0.97397 0.96788 0.89930 1.21035 0.97981 0.96170 0.93617 0.91029 1.21488 0.97260 0.96247 0.99639 1.20830 0.97887 0.99640 0.94087 1.21854 0.94858 1.01332 0.97879 0.87349 1.23152 1.00002 1.00172 0.98731 1.22247 1.01450 0.92567 1.00146 0.86659 1.21040 0.97500 1.01066 0.92268 1.23063 0.97118 0.96374 1.06139 1.22397 0.93539 1.01322 1.03314 0.93937 0.94627 0.97340 0.84704 0.93536 0.95536 0.93647 0.92555 0.92054 0.91472 0.89912 0.87699 0.90661 0.92282 0.89343 0.90518 0.92536 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.51 12.95 21.45 0.28 -53.23 16 2 C 0.03 1.47 5.39 84.66 0.46 1.92 16 3 Si 0.94 44.91 29.54 68.60 2.03 46.94 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 7 C -0.46 -24.91 8.15 25.60 0.21 -24.71 16 8 H 0.05 2.62 7.82 -2.91 -0.02 2.59 16 9 C 0.02 0.95 1.74 -52.93 -0.09 0.86 16 10 C 0.12 5.50 5.76 86.30 0.50 6.00 16 11 N -0.67 -26.54 5.07 -513.88 -2.60 -29.15 16 12 C 0.07 2.26 5.08 86.30 0.44 2.70 16 13 C -0.07 -1.91 2.31 -10.73 -0.02 -1.94 16 14 H 0.07 1.94 8.04 -2.39 -0.02 1.92 16 15 C -0.11 -3.35 5.02 30.65 0.15 -3.19 16 16 C -0.09 -2.21 5.93 30.24 0.18 -2.03 16 17 C -0.14 -2.97 6.00 -11.64 -0.07 -3.04 16 18 H 0.11 1.94 8.14 -2.39 -0.02 1.93 16 19 C -0.18 -3.68 9.66 30.59 0.30 -3.38 16 20 C -0.15 -2.92 6.19 -10.98 -0.07 -2.98 16 21 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 22 C -0.08 -1.83 5.12 30.46 0.16 -1.67 16 23 C -0.19 -7.98 9.88 30.60 0.30 -7.68 16 24 C -0.17 -7.93 9.48 30.60 0.29 -7.64 16 25 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 26 H 0.04 1.80 8.13 -2.39 -0.02 1.78 16 27 H 0.01 0.35 7.94 -2.39 -0.02 0.33 16 28 H 0.34 12.49 8.79 -89.69 -0.79 11.70 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.04 1.44 7.11 -2.38 -0.02 1.42 16 32 H 0.06 2.15 7.45 -2.39 -0.02 2.14 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.88 7.26 -2.39 -0.02 1.86 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.06 1.40 8.06 -2.39 -0.02 1.38 16 39 H 0.09 3.22 8.08 -2.39 -0.02 3.20 16 40 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 41 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 Total: -1.00 -59.03 331.15 2.60 -56.43 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.18 Total: 25.78 kcal Atomic # 6 Polarization: -49.50 SS G_CDS: 2.72 Total: -46.77 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -2.33 Total: -82.37 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -59.03 2.60 -56.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403823032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.328 kcal (2) G-P(sol) polarization free energy of solvation -59.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds