Wall clock time and date at job start Mon Mar 30 2020 05:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99613 * 2 1 4 4 H 1.48503 * 109.46795 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47232 * 299.99854 * 3 2 1 6 6 H 1.48493 * 109.47465 * 60.00278 * 3 2 1 7 7 C 1.37875 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99726 * 158.75361 * 7 2 1 9 9 C 1.50698 * 119.99992 * 338.76259 * 7 2 1 10 10 C 1.53004 * 115.54863 * 324.42527 * 9 7 2 11 11 N 1.46893 * 109.46855 * 280.03092 * 10 9 7 12 12 C 1.48046 * 110.99621 * 183.81356 * 11 10 9 13 13 C 1.53500 * 86.04164 * 137.29261 * 12 11 10 14 14 C 1.48044 * 111.00392 * 283.26338 * 11 10 9 15 15 C 1.52633 * 113.59955 * 222.07656 * 13 12 11 16 16 C 1.53160 * 109.24989 * 284.75796 * 15 13 12 17 17 C 1.52973 * 109.42785 * 302.27299 * 16 15 13 18 18 C 1.52968 * 109.69325 * 61.74232 * 17 16 15 19 19 C 1.52643 * 113.58982 * 90.94015 * 13 12 11 20 20 C 1.52998 * 117.52090 * 110.13465 * 9 7 2 21 21 C 1.52991 * 60.00355 * 107.47450 * 20 9 7 22 22 H 0.97001 * 120.00189 * 5.42305 * 1 2 3 23 23 H 1.08999 * 109.46553 * 160.03237 * 10 9 7 24 24 H 1.09000 * 109.47066 * 40.03292 * 10 9 7 25 25 H 1.09001 * 113.77742 * 23.01350 * 12 11 10 26 26 H 1.09004 * 113.78268 * 251.57851 * 12 11 10 27 27 H 1.08992 * 113.78376 * 108.42315 * 14 11 10 28 28 H 1.09003 * 113.77833 * 336.98987 * 14 11 10 29 29 H 1.09003 * 109.51045 * 44.69260 * 15 13 12 30 30 H 1.09007 * 109.50450 * 164.82771 * 15 13 12 31 31 H 1.09001 * 109.47425 * 182.28854 * 16 15 13 32 32 H 1.08999 * 109.47632 * 62.26596 * 16 15 13 33 33 H 1.09001 * 109.43368 * 301.67402 * 17 16 15 34 34 H 1.09000 * 109.39194 * 181.79021 * 17 16 15 35 35 H 1.09000 * 109.47688 * 178.26800 * 18 17 16 36 36 H 1.09005 * 109.47586 * 58.25154 * 18 17 16 37 37 H 1.09005 * 109.50905 * 195.18121 * 19 13 12 38 38 H 1.08997 * 109.51485 * 315.31292 * 19 13 12 39 39 H 1.09000 * 117.50118 * 214.97187 * 20 9 7 40 40 H 1.09001 * 117.49864 * 359.97438 * 20 9 7 41 41 H 1.08993 * 117.50208 * 252.51085 * 21 20 9 42 42 H 1.09010 * 117.49895 * 107.48367 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0295 -1.2259 -0.3384 9 6 1.3278 -2.4546 0.4738 10 6 0.3440 -2.2802 1.6327 11 7 1.0869 -2.1965 2.8971 12 6 0.1628 -2.1187 4.0511 13 6 1.1072 -3.1146 4.7386 14 6 1.5499 -3.5344 3.3302 15 6 0.3805 -4.2161 5.5055 16 6 -0.1796 -3.6389 6.8089 17 6 0.9626 -3.0430 7.6337 18 6 1.6189 -1.9010 6.8558 19 6 2.2117 -2.4464 5.5533 20 6 1.0014 -3.5187 -0.5759 21 6 2.1366 -3.7524 0.4229 22 1 -0.4850 0.8363 -0.0794 23 1 -0.3337 -3.1332 1.6652 24 1 -0.2301 -1.3652 1.4873 25 1 -0.8291 -2.5222 3.8478 26 1 0.1355 -1.1384 4.5271 27 1 2.6256 -3.6801 3.2327 28 1 0.9683 -4.3568 2.9136 29 1 -0.4373 -4.6039 4.8981 30 1 1.0785 -5.0216 5.7344 31 1 -0.6643 -4.4316 7.3787 32 1 -0.9066 -2.8600 6.5786 33 1 1.7038 -3.8156 7.8380 34 1 0.5681 -2.6608 8.5752 35 1 2.4119 -1.4590 7.4591 36 1 0.8715 -1.1418 6.6252 37 1 2.9867 -3.1774 5.7841 38 1 2.6431 -1.6270 4.9785 39 1 0.0858 -4.0945 -0.4411 40 1 1.2758 -3.3070 -1.6094 41 1 3.1579 -3.6945 0.0466 42 1 1.9678 -4.4820 1.2150 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404061899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:05 Heat of formation + Delta-G solvation = 41.634244 kcal Electronic energy + Delta-G solvation = -19329.405505 eV Core-core repulsion = 16696.333987 eV Total energy + Delta-G solvation = -2633.071518 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35827 -36.99885 -35.35502 -32.10175 -30.73510 -30.08851 -26.32639 -25.65279 -25.23350 -22.70682 -21.94791 -21.00592 -20.27793 -18.95996 -17.77054 -16.13285 -15.37382 -15.06618 -14.53739 -14.46413 -14.14461 -13.65515 -13.42591 -13.36276 -12.83284 -12.56259 -12.09601 -11.85489 -11.74475 -11.49389 -11.04374 -11.01676 -10.93400 -10.83362 -10.74514 -10.38246 -10.33107 -10.13320 -9.90820 -9.70479 -9.63013 -9.10707 -8.95141 -8.60667 -7.89737 -7.73177 -6.00456 -3.92961 3.33401 3.42792 3.48443 4.46370 4.62442 4.62947 4.85457 4.99079 5.08768 5.21971 5.37336 5.45207 5.48259 5.63185 5.65200 5.74888 5.78527 5.96289 5.99245 6.05989 6.11779 6.13246 6.16880 6.23812 6.25846 6.32266 6.36980 6.41462 6.53165 6.58573 6.59849 6.72643 6.76217 6.81502 6.99562 7.05381 7.40136 7.47674 7.75490 8.05859 8.16313 8.56894 8.98481 9.61945 11.03845 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024471 B = 0.006904 C = 0.006005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.955580 B = 4054.789705 C = 4661.785786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.077 3.923 3 Si 0.887 3.113 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.477 4.477 8 H 0.058 0.942 9 C 0.070 3.930 10 C 0.053 3.947 11 N -0.450 5.450 12 C 0.010 3.990 13 C -0.087 4.087 14 C 0.014 3.986 15 C -0.104 4.104 16 C -0.116 4.116 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.088 4.088 20 C -0.208 4.208 21 C -0.213 4.213 22 H 0.260 0.740 23 H 0.000 1.000 24 H 0.124 0.876 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.128 -6.120 12.892 14.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.514 4.514 8 H 0.076 0.924 9 C 0.069 3.931 10 C -0.075 4.075 11 N -0.172 5.172 12 C -0.119 4.119 13 C -0.088 4.088 14 C -0.115 4.115 15 C -0.142 4.142 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.126 4.126 20 C -0.247 4.247 21 C -0.250 4.250 22 H 0.070 0.930 23 H 0.019 0.981 24 H 0.141 0.859 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.180 -5.438 12.814 13.922 hybrid contribution -0.276 0.062 -0.191 0.341 sum -0.096 -5.376 12.624 13.721 Atomic orbital electron populations 1.69855 1.06265 1.26660 1.48687 1.24861 0.94525 0.98938 0.94167 0.86624 0.80683 0.83765 0.77398 1.19707 1.21482 1.20759 1.20430 0.98017 0.90562 1.42353 0.92371 1.18794 0.94403 0.87719 0.92141 1.22418 0.94726 1.02025 0.88336 1.68521 1.25306 1.22304 1.01052 1.23853 0.94961 0.99127 0.93935 1.22039 0.96524 0.95753 0.94436 1.23923 1.01332 0.93256 0.92963 1.21495 0.99276 0.97401 0.96062 1.21505 0.97804 0.99986 0.96093 1.21495 0.97825 0.98179 0.97918 1.21538 0.99915 0.97737 0.96388 1.21195 0.96187 1.00203 0.94968 1.23003 0.97217 1.08053 0.96432 1.22932 0.95653 1.04099 1.02347 0.92974 0.98134 0.85880 0.92559 0.90457 0.90251 0.92486 0.92297 0.92151 0.92626 0.91989 0.92358 0.92662 0.92398 0.91925 0.92376 0.90451 0.92223 0.90565 0.90997 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.73 11.08 55.43 0.61 -24.11 16 2 C 0.08 2.14 5.05 -17.82 -0.09 2.05 16 3 Si 0.89 21.55 29.59 -169.99 -5.03 16.52 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.48 -13.34 8.98 -34.44 -0.31 -13.65 16 8 H 0.06 1.65 7.90 -52.49 -0.41 1.24 16 9 C 0.07 1.78 1.93 -155.66 -0.30 1.48 16 10 C 0.05 1.26 4.52 -3.83 -0.02 1.24 16 11 N -0.45 -9.46 6.05 -240.17 -1.45 -10.91 16 12 C 0.01 0.18 6.74 -2.94 -0.02 0.16 16 13 C -0.09 -1.29 0.78 -154.44 -0.12 -1.41 16 14 C 0.01 0.25 4.85 -2.95 -0.01 0.24 16 15 C -0.10 -1.31 5.10 -26.84 -0.14 -1.45 16 16 C -0.12 -1.28 5.85 -26.66 -0.16 -1.44 16 17 C -0.12 -1.23 5.86 -26.76 -0.16 -1.38 16 18 C -0.12 -1.40 5.85 -26.67 -0.16 -1.56 16 19 C -0.09 -1.22 5.04 -26.84 -0.14 -1.36 16 20 C -0.21 -4.94 9.88 -26.74 -0.26 -5.21 16 21 C -0.21 -4.78 9.15 -26.73 -0.24 -5.02 16 22 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 23 H 0.00 0.01 7.49 -51.93 -0.39 -0.38 16 24 H 0.12 3.31 5.38 -51.93 -0.28 3.03 16 25 H 0.06 0.97 7.80 -51.93 -0.41 0.57 16 26 H 0.08 1.35 7.45 -51.93 -0.39 0.96 16 27 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 28 H 0.06 1.01 6.83 -51.93 -0.35 0.66 16 29 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.72 8.00 -51.93 -0.42 0.30 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.78 7.47 -51.93 -0.39 0.40 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.24 8.01 -51.93 -0.42 0.82 16 39 H 0.06 1.33 8.08 -51.93 -0.42 0.91 16 40 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 41 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 42 H 0.07 1.39 5.81 -51.92 -0.30 1.09 16 LS Contribution 317.45 15.07 4.78 4.78 Total: -1.00 -28.06 317.45 -10.73 -38.79 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.53 Total: 2.23 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: -2.12 Total: -27.30 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: -0.84 Total: -35.02 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.06 -10.73 -38.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404061899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.423 kcal (2) G-P(sol) polarization free energy of solvation -28.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds