Wall clock time and date at job start Mon Mar 30 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99613 * 2 1 4 4 H 1.48503 * 109.46795 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47232 * 299.99854 * 3 2 1 6 6 H 1.48493 * 109.47465 * 60.00278 * 3 2 1 7 7 C 1.37875 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99726 * 158.75361 * 7 2 1 9 9 C 1.50698 * 119.99992 * 338.76259 * 7 2 1 10 10 C 1.53004 * 115.54863 * 324.42527 * 9 7 2 11 11 N 1.46893 * 109.46855 * 280.03092 * 10 9 7 12 12 C 1.48046 * 110.99621 * 183.81356 * 11 10 9 13 13 C 1.53500 * 86.04164 * 137.29261 * 12 11 10 14 14 C 1.48044 * 111.00392 * 283.26338 * 11 10 9 15 15 C 1.52633 * 113.59955 * 222.07656 * 13 12 11 16 16 C 1.53160 * 109.24989 * 284.75796 * 15 13 12 17 17 C 1.52973 * 109.42785 * 302.27299 * 16 15 13 18 18 C 1.52968 * 109.69325 * 61.74232 * 17 16 15 19 19 C 1.52643 * 113.58982 * 90.94015 * 13 12 11 20 20 C 1.52998 * 117.52090 * 110.13465 * 9 7 2 21 21 C 1.52991 * 60.00355 * 107.47450 * 20 9 7 22 22 H 0.97001 * 120.00189 * 5.42305 * 1 2 3 23 23 H 1.08999 * 109.46553 * 160.03237 * 10 9 7 24 24 H 1.09000 * 109.47066 * 40.03292 * 10 9 7 25 25 H 1.09001 * 113.77742 * 23.01350 * 12 11 10 26 26 H 1.09004 * 113.78268 * 251.57851 * 12 11 10 27 27 H 1.08992 * 113.78376 * 108.42315 * 14 11 10 28 28 H 1.09003 * 113.77833 * 336.98987 * 14 11 10 29 29 H 1.09003 * 109.51045 * 44.69260 * 15 13 12 30 30 H 1.09007 * 109.50450 * 164.82771 * 15 13 12 31 31 H 1.09001 * 109.47425 * 182.28854 * 16 15 13 32 32 H 1.08999 * 109.47632 * 62.26596 * 16 15 13 33 33 H 1.09001 * 109.43368 * 301.67402 * 17 16 15 34 34 H 1.09000 * 109.39194 * 181.79021 * 17 16 15 35 35 H 1.09000 * 109.47688 * 178.26800 * 18 17 16 36 36 H 1.09005 * 109.47586 * 58.25154 * 18 17 16 37 37 H 1.09005 * 109.50905 * 195.18121 * 19 13 12 38 38 H 1.08997 * 109.51485 * 315.31292 * 19 13 12 39 39 H 1.09000 * 117.50118 * 214.97187 * 20 9 7 40 40 H 1.09001 * 117.49864 * 359.97438 * 20 9 7 41 41 H 1.08993 * 117.50208 * 252.51085 * 21 20 9 42 42 H 1.09010 * 117.49895 * 107.48367 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0295 -1.2259 -0.3384 9 6 1.3278 -2.4546 0.4738 10 6 0.3440 -2.2802 1.6327 11 7 1.0869 -2.1965 2.8971 12 6 0.1628 -2.1187 4.0511 13 6 1.1072 -3.1146 4.7386 14 6 1.5499 -3.5344 3.3302 15 6 0.3805 -4.2161 5.5055 16 6 -0.1796 -3.6389 6.8089 17 6 0.9626 -3.0430 7.6337 18 6 1.6189 -1.9010 6.8558 19 6 2.2117 -2.4464 5.5533 20 6 1.0014 -3.5187 -0.5759 21 6 2.1366 -3.7524 0.4229 22 1 -0.4850 0.8363 -0.0794 23 1 -0.3337 -3.1332 1.6652 24 1 -0.2301 -1.3652 1.4873 25 1 -0.8291 -2.5222 3.8478 26 1 0.1355 -1.1384 4.5271 27 1 2.6256 -3.6801 3.2327 28 1 0.9683 -4.3568 2.9136 29 1 -0.4373 -4.6039 4.8981 30 1 1.0785 -5.0216 5.7344 31 1 -0.6643 -4.4316 7.3787 32 1 -0.9066 -2.8600 6.5786 33 1 1.7038 -3.8156 7.8380 34 1 0.5681 -2.6608 8.5752 35 1 2.4119 -1.4590 7.4591 36 1 0.8715 -1.1418 6.6252 37 1 2.9867 -3.1774 5.7841 38 1 2.6431 -1.6270 4.9785 39 1 0.0858 -4.0945 -0.4411 40 1 1.2758 -3.3070 -1.6094 41 1 3.1579 -3.6945 0.0466 42 1 1.9678 -4.4820 1.2150 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404061899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:04 Heat of formation + Delta-G solvation = 26.243829 kcal Electronic energy + Delta-G solvation = -19330.072884 eV Core-core repulsion = 16696.333987 eV Total energy + Delta-G solvation = -2633.738897 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.71112 -38.59385 -36.75432 -34.20109 -31.71451 -31.42654 -28.00186 -27.18087 -27.03455 -23.80013 -23.28918 -22.83190 -21.37952 -20.89009 -19.00151 -18.09190 -16.76438 -16.63685 -16.25083 -15.88400 -15.50138 -15.06180 -14.87772 -14.49876 -14.43569 -13.91272 -13.57666 -13.32686 -13.01195 -12.95115 -12.83191 -12.69447 -12.40974 -12.23985 -12.08848 -11.98482 -11.90694 -11.65102 -11.14603 -11.12804 -10.93353 -10.87465 -10.67508 -10.51724 -9.87096 -9.33095 -8.10386 -6.08944 1.37892 1.43503 1.53526 2.43093 2.98044 3.23040 3.43134 3.68112 3.79648 4.02866 4.21056 4.27584 4.32130 4.36863 4.46274 4.50040 4.57951 4.64375 4.67670 4.69493 4.74453 4.82381 4.85807 4.90072 4.93266 4.99980 5.12259 5.15476 5.19020 5.22740 5.25258 5.32100 5.40230 5.46307 5.53710 5.59037 5.62693 5.65919 5.82719 6.08223 6.42374 6.54023 6.86833 7.47732 8.92910 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024471 B = 0.006904 C = 0.006005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.955580 B = 4054.789705 C = 4661.785786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.038 3.962 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.500 4.500 8 H 0.044 0.956 9 C 0.039 3.961 10 C 0.067 3.933 11 N -0.478 5.478 12 C 0.009 3.991 13 C -0.066 4.066 14 C 0.014 3.986 15 C -0.101 4.101 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.116 4.116 19 C -0.087 4.087 20 C -0.210 4.210 21 C -0.188 4.188 22 H 0.262 0.738 23 H 0.002 0.998 24 H 0.091 0.909 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 -7.063 14.857 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.162 4.162 3 Si 0.770 3.230 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.038 3.962 10 C -0.061 4.061 11 N -0.200 5.200 12 C -0.120 4.120 13 C -0.067 4.067 14 C -0.115 4.115 15 C -0.139 4.139 16 C -0.152 4.152 17 C -0.150 4.150 18 C -0.153 4.153 19 C -0.125 4.125 20 C -0.249 4.249 21 C -0.225 4.225 22 H 0.071 0.929 23 H 0.020 0.980 24 H 0.108 0.892 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.539 -6.388 14.778 16.109 hybrid contribution -0.378 0.347 -0.830 0.976 sum 0.161 -6.040 13.948 15.201 Atomic orbital electron populations 1.69960 1.07215 1.27283 1.49168 1.25461 0.95231 1.01547 0.93984 0.85752 0.79421 0.80381 0.77494 1.19693 1.20679 1.20607 1.20632 0.97576 0.92374 1.43090 0.93806 1.18928 0.96053 0.87868 0.93355 1.22081 0.94288 1.00242 0.89519 1.68460 1.26204 1.24673 1.00681 1.23885 0.95131 0.99893 0.93059 1.21914 0.95877 0.95429 0.93455 1.23940 1.01021 0.91720 0.94824 1.21475 0.99227 0.96707 0.96455 1.21508 0.97901 1.00332 0.95480 1.21481 0.97716 0.97721 0.98082 1.21522 1.00058 0.98157 0.95594 1.21184 0.96189 0.99599 0.95524 1.22983 0.98404 1.07659 0.95856 1.22907 0.95051 1.02609 1.01965 0.92868 0.98028 0.89162 0.92519 0.90971 0.90582 0.92295 0.92624 0.90671 0.90684 0.92837 0.91320 0.91121 0.91163 0.93037 0.90941 0.93237 0.90979 0.91580 0.91110 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.64 11.08 21.45 0.24 -51.40 16 2 C 0.04 2.15 5.05 84.65 0.43 2.57 16 3 Si 0.94 44.83 29.59 68.60 2.03 46.86 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 7 C -0.50 -28.48 8.98 25.60 0.23 -28.25 16 8 H 0.04 2.54 7.90 -2.91 -0.02 2.52 16 9 C 0.04 1.98 1.93 -52.93 -0.10 1.88 16 10 C 0.07 3.24 4.52 86.31 0.39 3.63 16 11 N -0.48 -20.20 6.05 -913.76 -5.53 -25.73 16 12 C 0.01 0.32 6.74 86.25 0.58 0.90 16 13 C -0.07 -1.87 0.78 -52.07 -0.04 -1.91 16 14 C 0.01 0.47 4.85 86.24 0.42 0.89 16 15 C -0.10 -2.25 5.10 30.53 0.16 -2.09 16 16 C -0.11 -2.17 5.85 30.64 0.18 -1.99 16 17 C -0.11 -1.97 5.86 30.57 0.18 -1.79 16 18 C -0.12 -2.49 5.85 30.63 0.18 -2.31 16 19 C -0.09 -2.29 5.04 30.53 0.15 -2.14 16 20 C -0.21 -9.96 9.88 30.59 0.30 -9.66 16 21 C -0.19 -8.30 9.15 30.59 0.28 -8.02 16 22 H 0.26 14.28 8.32 -92.71 -0.77 13.51 16 23 H 0.00 0.08 7.49 -2.39 -0.02 0.06 16 24 H 0.09 5.00 5.38 -2.39 -0.01 4.98 16 25 H 0.06 1.96 7.80 -2.39 -0.02 1.94 16 26 H 0.07 2.54 7.45 -2.39 -0.02 2.53 16 27 H 0.08 2.64 8.05 -2.39 -0.02 2.62 16 28 H 0.06 2.00 6.83 -2.39 -0.02 1.99 16 29 H 0.05 1.29 8.09 -2.39 -0.02 1.27 16 30 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.11 8.00 -2.39 -0.02 1.09 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.22 7.47 -2.38 -0.02 1.20 16 37 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.05 1.57 8.01 -2.39 -0.02 1.55 16 39 H 0.07 3.18 8.08 -2.39 -0.02 3.16 16 40 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 42 H 0.09 3.57 5.81 -2.38 -0.01 3.55 16 Total: -1.00 -60.36 317.45 1.03 -59.33 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.96 Total: 19.22 kcal Atomic # 6 Polarization: -51.63 SS G_CDS: 3.33 Total: -48.29 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -5.29 Total: -77.13 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -60.36 1.03 -59.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404061899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.578 kcal (2) G-P(sol) polarization free energy of solvation -60.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds