Wall clock time and date at job start Mon Mar 30 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.29440 * 117.96348 * 2 1 4 4 C 1.50072 * 124.07853 * 180.46724 * 3 2 1 5 5 C 1.53019 * 110.14591 * 342.86945 * 4 3 2 6 6 H 1.08999 * 109.64266 * 289.53995 * 5 4 3 7 7 N 1.46901 * 109.64128 * 169.12108 * 5 4 3 8 8 C 1.46895 * 111.00071 * 85.00030 * 7 5 4 9 9 H 1.08999 * 110.53971 * 323.84059 * 8 7 5 10 10 C 1.54261 * 110.48837 * 86.45273 * 8 7 5 11 11 C 1.53876 * 106.59990 * 142.28620 * 10 8 7 12 12 C 1.54267 * 106.59870 * 0.02562 * 11 10 8 13 13 H 1.09004 * 110.48597 * 95.06674 * 12 11 10 14 14 C 1.50701 * 110.48772 * 217.70999 * 12 11 10 15 15 H 1.08001 * 119.99746 * 118.54331 * 14 12 11 16 16 C 1.37877 * 120.00009 * 298.54805 * 14 12 11 17 17 N 1.31515 * 119.99767 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99922 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47292 * 59.99716 * 18 16 14 20 20 H 1.48499 * 109.47185 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46976 * 299.99408 * 18 16 14 22 22 C 1.54888 * 110.48643 * 201.23001 * 8 7 5 23 23 C 1.53388 * 108.43865 * 49.43567 * 5 4 3 24 24 C 1.50070 * 117.96513 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.47266 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46895 * 120.00247 * 1 2 3 27 27 H 1.09005 * 109.47128 * 240.00058 * 1 2 3 28 28 H 1.08003 * 117.95925 * 0.44714 * 3 2 1 29 29 H 1.09005 * 109.35588 * 222.66072 * 4 3 2 30 30 H 1.08995 * 109.35647 * 103.07627 * 4 3 2 31 31 H 1.00905 * 110.99775 * 208.95266 * 7 5 4 32 32 H 1.08998 * 110.03492 * 23.00495 * 10 8 7 33 33 H 1.08994 * 110.03470 * 261.57071 * 10 8 7 34 34 H 1.08995 * 110.03160 * 119.28453 * 11 10 8 35 35 H 1.08998 * 110.03319 * 240.71542 * 11 10 8 36 36 H 0.97000 * 119.99775 * 180.02562 * 17 16 14 37 37 H 1.09005 * 110.75648 * 321.69142 * 22 8 7 38 38 H 1.08999 * 110.75852 * 85.06073 * 22 8 7 39 39 H 1.08992 * 109.64520 * 52.24980 * 23 5 4 40 40 H 1.09007 * 109.64199 * 172.88156 * 23 5 4 41 41 H 1.08997 * 109.36203 * 283.08241 * 24 2 1 42 42 H 1.09000 * 109.35522 * 42.66626 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 3.6061 1.3032 -0.0101 5 6 4.2793 -0.0073 0.4032 6 1 4.1087 -0.1882 1.4644 7 7 5.7226 0.0753 0.1422 8 6 6.4245 0.7143 1.2633 9 1 5.8136 1.5071 1.6951 10 6 6.7905 -0.3308 2.3373 11 6 8.1760 0.0624 2.8792 12 6 8.6033 1.3332 2.1160 13 1 8.3442 2.2256 2.6858 14 6 10.0818 1.3020 1.8257 15 1 10.4316 1.3084 0.8040 16 6 10.9877 1.2652 2.8644 17 7 10.5615 1.2578 4.1086 18 14 12.8202 1.2273 2.5045 19 1 13.1999 2.4425 1.7403 20 1 13.5751 1.1911 3.7829 21 1 13.1426 0.0184 1.7045 22 6 7.7911 1.2755 0.7981 23 6 3.6704 -1.1472 -0.4231 24 6 2.2107 -1.3255 -0.0006 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 -0.3634 -0.5138 0.8900 28 1 1.5088 2.0378 0.0074 29 1 3.8898 2.0910 0.6878 30 1 3.9333 1.5768 -1.0132 31 1 6.1076 -0.8368 -0.0527 32 1 6.8322 -1.3249 1.8922 33 1 6.0558 -0.3121 3.1422 34 1 8.1136 0.2719 3.9470 35 1 8.8899 -0.7408 2.6970 36 1 11.1989 1.2323 4.8394 37 1 8.2623 0.6014 0.0828 38 1 7.6748 2.2722 0.3724 39 1 3.7167 -0.8969 -1.4828 40 1 4.2211 -2.0694 -0.2369 41 1 2.1746 -1.7542 1.0009 42 1 1.7122 -1.9988 -0.6979 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562524200.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:13 Heat of formation + Delta-G solvation = -18.475301 kcal Electronic energy + Delta-G solvation = -18360.458413 eV Core-core repulsion = 15724.780349 eV Total energy + Delta-G solvation = -2635.678064 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.19842 -37.35148 -34.38772 -32.33300 -30.90732 -30.31807 -27.98604 -26.82892 -25.08634 -23.61492 -23.03273 -21.05014 -19.43024 -18.96736 -17.56219 -16.23694 -16.00700 -14.88626 -14.64721 -14.40620 -14.30158 -13.98599 -13.49966 -13.19405 -12.99480 -12.47927 -12.40209 -12.32854 -12.16906 -11.78192 -11.54505 -11.32822 -10.98903 -10.81888 -10.73649 -10.56858 -10.40575 -10.26824 -9.97903 -9.78143 -9.46343 -9.03941 -8.76258 -8.66960 -8.32377 -7.90830 -5.94945 -3.97305 2.20266 3.35591 3.39975 3.42857 4.37721 4.50192 4.60513 4.75283 5.01524 5.17437 5.25997 5.36452 5.38863 5.46972 5.57166 5.57621 5.61327 5.66586 5.76347 5.77724 5.80112 5.95080 5.98282 6.07437 6.13394 6.25764 6.40170 6.55655 6.62984 6.74822 6.81024 6.91420 6.98188 7.10092 7.24290 7.41827 7.60907 7.78113 7.81103 7.97781 8.09691 8.54176 9.05796 9.66341 11.14657 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.058197 B = 0.003890 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.011035 B = 7196.235414 C = 7224.194229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.139 4.139 3 C -0.148 4.148 4 C -0.080 4.080 5 C 0.087 3.913 6 H 0.043 0.957 7 N -0.680 5.680 8 C 0.081 3.919 9 H 0.071 0.929 10 C -0.153 4.153 11 C -0.092 4.092 12 C 0.047 3.953 13 H 0.026 0.974 14 C -0.511 4.511 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.278 1.278 22 C -0.099 4.099 23 C -0.119 4.119 24 C -0.078 4.078 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.338 0.662 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.259 0.741 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.276 -4.071 -7.023 19.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.139 4.139 3 C -0.167 4.167 4 C -0.117 4.117 5 C -0.023 4.023 6 H 0.061 0.939 7 N -0.311 5.311 8 C -0.028 4.028 9 H 0.089 0.911 10 C -0.192 4.192 11 C -0.130 4.130 12 C 0.028 3.972 13 H 0.044 0.956 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.138 4.138 23 C -0.157 4.157 24 C -0.116 4.116 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.157 0.843 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.265 -3.494 -7.201 19.030 hybrid contribution 0.946 -0.749 0.710 1.400 sum -16.319 -4.242 -6.491 18.068 Atomic orbital electron populations 1.20931 0.92862 1.02051 1.01691 1.20832 0.95457 0.95068 1.02504 1.22046 0.96465 0.96919 1.01223 1.20448 0.91008 0.97705 1.02552 1.21498 0.88707 0.94628 0.97427 0.93861 1.60684 1.01545 1.26996 1.41828 1.22576 0.95758 0.95611 0.88858 0.91098 1.22954 0.99985 0.97844 0.98425 1.21994 0.91526 0.99831 0.99687 1.19452 0.93924 0.93646 0.90172 0.95582 1.21147 0.90884 1.50434 0.92508 0.92703 1.24990 0.98607 0.95286 0.95181 1.69971 1.34087 1.50744 0.98201 0.86717 0.85672 0.78581 0.77353 1.20320 1.21437 1.20348 1.22533 0.92780 0.98776 0.99670 1.21768 0.95040 0.98129 1.00769 1.20319 0.94921 0.94767 1.01577 0.92317 0.92045 0.92039 0.88102 0.91326 0.90031 0.84260 0.93529 0.93980 0.92911 0.93152 0.93152 0.92338 0.93436 0.91063 0.91781 0.91212 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.98 36.00 0.36 -0.62 16 2 C -0.14 -1.44 5.84 -100.94 -0.59 -2.03 16 3 C -0.15 -1.66 9.40 -35.90 -0.34 -2.00 16 4 C -0.08 -1.01 5.56 -28.18 -0.16 -1.17 16 5 C 0.09 1.16 2.40 -67.50 -0.16 1.00 16 6 H 0.04 0.63 7.74 -51.93 -0.40 0.22 16 7 N -0.68 -10.39 6.15 -97.79 -0.60 -11.00 16 8 C 0.08 1.47 2.95 -66.06 -0.20 1.27 16 9 H 0.07 1.29 7.35 -51.93 -0.38 0.91 16 10 C -0.15 -2.90 6.32 -25.61 -0.16 -3.06 16 11 C -0.09 -2.17 5.40 -25.61 -0.14 -2.31 16 12 C 0.05 1.18 2.80 -90.10 -0.25 0.93 16 13 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 14 C -0.51 -14.24 8.40 -34.44 -0.29 -14.53 16 15 H 0.05 1.51 7.77 -52.49 -0.41 1.10 16 16 C 0.06 1.71 5.33 -17.82 -0.09 1.61 16 17 N -0.89 -25.98 12.35 55.43 0.68 -25.29 16 18 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.10 -2.10 5.96 -24.73 -0.15 -2.25 16 23 C -0.12 -1.32 5.37 -26.53 -0.14 -1.47 16 24 C -0.08 -0.78 5.82 -28.18 -0.16 -0.94 16 25 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.10 1.02 7.56 -52.48 -0.40 0.62 16 29 H 0.07 0.92 7.64 -51.93 -0.40 0.52 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.34 5.00 7.71 -39.29 -0.30 4.70 16 32 H 0.05 0.82 7.57 -51.93 -0.39 0.43 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 1.34 7.94 -51.93 -0.41 0.92 16 35 H 0.05 1.27 7.83 -51.93 -0.41 0.86 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.81 8.12 -51.93 -0.42 0.38 16 40 H 0.06 0.68 8.00 -51.93 -0.42 0.26 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 325.18 15.07 4.90 4.90 Total: -1.00 -28.22 325.18 -10.17 -38.39 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.66 Total: 2.01 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: -2.47 Total: -25.56 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.08 Total: -36.29 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.22 -10.17 -38.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562524200.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.916 kcal (2) G-P(sol) polarization free energy of solvation -28.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds