Wall clock time and date at job start Mon Mar 30 2020 06:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 110.43621 * 59.01849 * 9 7 2 11 11 C 1.54271 * 110.48404 * 296.47874 * 9 7 2 12 12 C 1.53878 * 106.59595 * 217.71190 * 11 9 7 13 13 C 1.54270 * 106.59857 * 359.97438 * 12 11 9 14 14 H 1.08994 * 110.48693 * 264.93338 * 13 12 11 15 15 N 1.46901 * 110.48385 * 142.42141 * 13 12 11 16 16 C 1.46893 * 110.99983 * 86.45151 * 15 13 12 17 17 H 1.09004 * 110.05480 * 35.03709 * 16 15 13 18 18 C 1.54373 * 110.07408 * 273.54330 * 16 15 13 19 19 C 1.54922 * 104.22960 * 217.22137 * 18 16 15 20 20 C 1.54987 * 102.81901 * 37.71592 * 19 18 16 21 21 C 1.53484 * 110.06782 * 156.57540 * 16 15 13 22 22 C 1.52557 * 121.08771 * 335.14435 * 21 16 15 23 23 C 1.52580 * 121.05167 * 263.43139 * 21 16 15 24 24 C 1.54883 * 110.48577 * 181.55883 * 9 7 2 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.08999 * 110.03165 * 336.99307 * 11 9 7 27 27 H 1.08995 * 110.03198 * 98.42676 * 11 9 7 28 28 H 1.08997 * 110.02806 * 119.28106 * 12 11 9 29 29 H 1.08996 * 110.03364 * 240.66634 * 12 11 9 30 30 H 1.00903 * 110.99594 * 210.41039 * 15 13 12 31 31 H 1.09009 * 110.48378 * 335.90840 * 18 16 15 32 32 H 1.09006 * 110.48485 * 98.53292 * 18 16 15 33 33 H 1.08995 * 110.74433 * 156.05607 * 19 18 16 34 34 H 1.09000 * 110.74138 * 279.38680 * 19 18 16 35 35 H 1.09009 * 110.50828 * 81.07498 * 20 19 18 36 36 H 1.08996 * 110.51697 * 203.64813 * 20 19 18 37 37 H 1.08990 * 117.50925 * 357.03594 * 22 21 16 38 38 H 1.09003 * 117.50411 * 142.11585 * 22 21 16 39 39 H 1.09001 * 117.51267 * 217.94032 * 23 21 16 40 40 H 1.09003 * 117.50958 * 2.99370 * 23 21 16 41 41 H 1.08994 * 110.76169 * 274.93894 * 24 9 7 42 42 H 1.09000 * 110.75607 * 38.30743 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6090 -2.5641 -0.8840 11 6 0.4174 -2.6471 1.2843 12 6 0.4902 -4.1305 1.6869 13 6 1.3648 -4.8323 0.6275 14 1 0.7414 -5.2762 -0.1486 15 7 2.2097 -5.8570 1.2552 16 6 1.4954 -7.1363 1.3604 17 1 0.8435 -7.2724 0.4975 18 6 0.6664 -7.1747 2.6621 19 6 0.7859 -8.6414 3.1465 20 6 2.2520 -9.0011 2.7956 21 6 2.4990 -8.2939 1.4515 22 6 3.9096 -8.1599 0.8863 23 6 2.8973 -9.0896 0.2121 24 6 2.2357 -3.6940 0.0359 25 1 -0.4850 0.8401 -0.0004 26 1 0.8381 -2.0249 2.0742 27 1 -0.6174 -2.3620 1.0949 28 1 0.9461 -4.2280 2.6721 29 1 -0.5094 -4.5651 1.6937 30 1 3.0776 -5.9676 0.7525 31 1 1.0863 -6.4933 3.4021 32 1 -0.3748 -6.9238 2.4588 33 1 0.6186 -8.7078 4.2215 34 1 0.0908 -9.2842 2.6062 35 1 2.9316 -8.6202 3.5581 36 1 2.3656 -10.0798 2.6886 37 1 4.1602 -7.2316 0.3731 38 1 4.7225 -8.6222 1.4465 39 1 3.0442 -10.1634 0.3288 40 1 2.4815 -8.7731 -0.7445 41 1 2.5773 -3.9479 -0.9675 42 1 3.0806 -3.4757 0.6890 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595040590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:32 Heat of formation + Delta-G solvation = 1.854722 kcal Electronic energy + Delta-G solvation = -18723.698673 eV Core-core repulsion = 16088.902185 eV Total energy + Delta-G solvation = -2634.796488 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.63727 -37.21525 -34.26292 -33.36267 -31.71309 -28.06518 -27.69256 -26.10740 -24.56267 -23.47868 -22.50133 -20.52119 -19.48131 -18.93357 -18.38140 -16.31101 -15.73788 -15.40553 -15.27632 -14.75476 -14.51417 -13.82788 -13.63531 -12.80101 -12.65115 -12.39270 -12.23974 -12.05741 -11.56559 -11.23026 -11.04044 -10.98081 -10.89306 -10.71678 -10.63227 -10.46185 -10.31485 -10.22461 -10.01589 -9.81046 -9.72464 -9.42419 -9.02612 -8.65024 -8.30980 -7.99698 -5.94458 -3.96751 3.35993 3.40411 3.43159 3.66593 4.38465 4.47324 4.51940 4.65504 4.81089 4.94142 5.21352 5.24763 5.37444 5.48372 5.57287 5.58924 5.68372 5.72453 5.77956 5.85461 5.92443 5.96698 6.02862 6.06025 6.07035 6.14403 6.23200 6.38521 6.49680 6.61692 6.74756 6.86818 6.93752 7.06684 7.28554 7.44163 7.66432 7.77127 7.84236 7.99566 8.09740 8.53816 9.05821 9.66696 11.15344 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.040836 B = 0.004633 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.503803 B = 6042.501991 C = 6422.980230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.051 3.949 10 H 0.026 0.974 11 C -0.096 4.096 12 C -0.111 4.111 13 C 0.079 3.921 14 H 0.035 0.965 15 N -0.676 5.676 16 C 0.118 3.882 17 H 0.043 0.957 18 C -0.109 4.109 19 C -0.123 4.123 20 C -0.083 4.083 21 C -0.127 4.127 22 C -0.166 4.166 23 C -0.174 4.174 24 C -0.116 4.116 25 H 0.259 0.741 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.335 0.665 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.041 0.959 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.053 -17.607 3.697 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.032 3.968 10 H 0.044 0.956 11 C -0.134 4.134 12 C -0.149 4.149 13 C -0.030 4.030 14 H 0.053 0.947 15 N -0.309 5.309 16 C 0.008 3.992 17 H 0.060 0.940 18 C -0.148 4.148 19 C -0.161 4.161 20 C -0.121 4.121 21 C -0.128 4.128 22 C -0.204 4.204 23 C -0.211 4.211 24 C -0.154 4.154 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.157 0.843 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.060 0.940 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.735 -17.270 4.330 18.014 hybrid contribution 0.410 0.671 -1.006 1.277 sum 3.145 -16.600 3.324 17.219 Atomic orbital electron populations 1.69970 1.05870 1.26414 1.50663 1.24976 0.94815 0.98936 0.95237 0.86722 0.79636 0.83432 0.78558 1.20392 1.21400 1.20296 1.21132 0.92722 0.90582 1.50625 0.92794 1.19368 0.92204 0.91369 0.93813 0.95598 1.22054 1.00530 0.91297 0.99543 1.22270 0.96775 0.97598 0.98300 1.22600 0.94405 0.91531 0.94466 0.94676 1.60795 1.06976 1.05966 1.57120 1.21630 0.92913 0.87343 0.97311 0.93959 1.22429 0.99216 0.95978 0.97142 1.22458 0.96082 0.97015 1.00527 1.21812 0.97050 0.98629 0.94592 1.21929 0.96882 0.99127 0.94852 1.22869 0.92451 1.01298 1.03744 1.23015 1.04013 0.97654 0.96450 1.22762 0.99048 0.95655 0.97901 0.93130 0.93083 0.93040 0.92182 0.94364 0.84348 0.90121 0.92049 0.91588 0.91859 0.91084 0.92135 0.88498 0.88687 0.88908 0.89066 0.93999 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 12.49 55.43 0.69 -25.36 16 2 C 0.06 1.74 5.34 -17.82 -0.10 1.65 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.31 8.38 -34.44 -0.29 -14.59 16 8 H 0.05 1.49 7.77 -52.49 -0.41 1.08 16 9 C 0.05 1.30 2.75 -90.11 -0.25 1.05 16 10 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 11 C -0.10 -2.30 5.50 -25.61 -0.14 -2.44 16 12 C -0.11 -2.19 5.66 -25.61 -0.15 -2.33 16 13 C 0.08 1.45 3.16 -65.96 -0.21 1.24 16 14 H 0.04 0.66 7.53 -51.93 -0.39 0.26 16 15 N -0.68 -10.57 6.09 -96.90 -0.59 -11.16 16 16 C 0.12 1.61 3.10 -66.75 -0.21 1.40 16 17 H 0.04 0.62 7.51 -51.93 -0.39 0.23 16 18 C -0.11 -1.41 5.67 -25.00 -0.14 -1.55 16 19 C -0.12 -1.28 6.91 -24.67 -0.17 -1.45 16 20 C -0.08 -0.86 6.58 -25.23 -0.17 -1.02 16 21 C -0.13 -1.46 2.35 -154.25 -0.36 -1.82 16 22 C -0.17 -1.77 9.65 -26.91 -0.26 -2.03 16 23 C -0.17 -1.77 10.24 -26.90 -0.28 -2.05 16 24 C -0.12 -2.43 5.72 -24.65 -0.14 -2.57 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 26 H 0.05 1.31 7.83 -51.93 -0.41 0.90 16 27 H 0.05 1.31 8.00 -51.93 -0.42 0.90 16 28 H 0.06 1.17 7.98 -51.93 -0.41 0.75 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.34 4.98 5.71 -39.29 -0.22 4.76 16 31 H 0.08 1.15 7.99 -51.92 -0.42 0.73 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 37 H 0.10 1.08 6.28 -51.93 -0.33 0.75 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.39 8.05 -51.93 -0.42 0.98 16 LS Contribution 322.95 15.07 4.87 4.87 Total: -1.00 -28.34 322.95 -10.49 -38.83 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.59 Total: 2.74 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -2.85 Total: -26.51 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.10 Total: -36.53 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.34 -10.49 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595040590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.689 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds