Wall clock time and date at job start Mon Mar 30 2020 06:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 110.43621 * 59.01849 * 9 7 2 11 11 C 1.54271 * 110.48404 * 296.47874 * 9 7 2 12 12 C 1.53878 * 106.59595 * 217.71190 * 11 9 7 13 13 C 1.54270 * 106.59857 * 359.97438 * 12 11 9 14 14 H 1.08994 * 110.48693 * 264.93338 * 13 12 11 15 15 N 1.46901 * 110.48385 * 142.42141 * 13 12 11 16 16 C 1.46893 * 110.99983 * 86.45151 * 15 13 12 17 17 H 1.09004 * 110.05480 * 35.03709 * 16 15 13 18 18 C 1.54373 * 110.07408 * 273.54330 * 16 15 13 19 19 C 1.54922 * 104.22960 * 217.22137 * 18 16 15 20 20 C 1.54987 * 102.81901 * 37.71592 * 19 18 16 21 21 C 1.53484 * 110.06782 * 156.57540 * 16 15 13 22 22 C 1.52557 * 121.08771 * 335.14435 * 21 16 15 23 23 C 1.52580 * 121.05167 * 263.43139 * 21 16 15 24 24 C 1.54883 * 110.48577 * 181.55883 * 9 7 2 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.08999 * 110.03165 * 336.99307 * 11 9 7 27 27 H 1.08995 * 110.03198 * 98.42676 * 11 9 7 28 28 H 1.08997 * 110.02806 * 119.28106 * 12 11 9 29 29 H 1.08996 * 110.03364 * 240.66634 * 12 11 9 30 30 H 1.00903 * 110.99594 * 210.41039 * 15 13 12 31 31 H 1.09009 * 110.48378 * 335.90840 * 18 16 15 32 32 H 1.09006 * 110.48485 * 98.53292 * 18 16 15 33 33 H 1.08995 * 110.74433 * 156.05607 * 19 18 16 34 34 H 1.09000 * 110.74138 * 279.38680 * 19 18 16 35 35 H 1.09009 * 110.50828 * 81.07498 * 20 19 18 36 36 H 1.08996 * 110.51697 * 203.64813 * 20 19 18 37 37 H 1.08990 * 117.50925 * 357.03594 * 22 21 16 38 38 H 1.09003 * 117.50411 * 142.11585 * 22 21 16 39 39 H 1.09001 * 117.51267 * 217.94032 * 23 21 16 40 40 H 1.09003 * 117.50958 * 2.99370 * 23 21 16 41 41 H 1.08994 * 110.76169 * 274.93894 * 24 9 7 42 42 H 1.09000 * 110.75607 * 38.30743 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6090 -2.5641 -0.8840 11 6 0.4174 -2.6471 1.2843 12 6 0.4902 -4.1305 1.6869 13 6 1.3648 -4.8323 0.6275 14 1 0.7414 -5.2762 -0.1486 15 7 2.2097 -5.8570 1.2552 16 6 1.4954 -7.1363 1.3604 17 1 0.8435 -7.2724 0.4975 18 6 0.6664 -7.1747 2.6621 19 6 0.7859 -8.6414 3.1465 20 6 2.2520 -9.0011 2.7956 21 6 2.4990 -8.2939 1.4515 22 6 3.9096 -8.1599 0.8863 23 6 2.8973 -9.0896 0.2121 24 6 2.2357 -3.6940 0.0359 25 1 -0.4850 0.8401 -0.0004 26 1 0.8381 -2.0249 2.0742 27 1 -0.6174 -2.3620 1.0949 28 1 0.9461 -4.2280 2.6721 29 1 -0.5094 -4.5651 1.6937 30 1 3.0776 -5.9676 0.7525 31 1 1.0863 -6.4933 3.4021 32 1 -0.3748 -6.9238 2.4588 33 1 0.6186 -8.7078 4.2215 34 1 0.0908 -9.2842 2.6062 35 1 2.9316 -8.6202 3.5581 36 1 2.3656 -10.0798 2.6886 37 1 4.1602 -7.2316 0.3731 38 1 4.7225 -8.6222 1.4465 39 1 3.0442 -10.1634 0.3288 40 1 2.4815 -8.7731 -0.7445 41 1 2.5773 -3.9479 -0.9675 42 1 3.0806 -3.4757 0.6890 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595040590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:32 Heat of formation + Delta-G solvation = -12.666819 kcal Electronic energy + Delta-G solvation = -18724.328374 eV Core-core repulsion = 16088.902185 eV Total energy + Delta-G solvation = -2635.426189 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.65753 -38.82328 -35.46101 -34.76908 -33.49061 -29.91200 -29.08528 -27.35368 -26.02085 -25.08547 -23.33880 -21.51928 -21.13693 -20.69168 -19.42999 -18.30829 -16.86961 -16.68648 -16.61951 -16.34681 -15.88236 -15.37507 -14.62441 -14.43893 -14.07737 -13.81500 -13.53957 -13.41762 -12.99564 -12.73758 -12.65384 -12.35919 -12.27104 -12.04137 -11.98034 -11.84120 -11.61700 -11.52778 -11.45505 -11.29781 -11.10342 -10.90911 -10.74398 -10.61609 -10.46622 -9.29547 -8.11339 -6.21170 1.41213 1.42975 1.50483 2.43945 2.79327 3.19486 3.33576 3.52681 3.75022 3.90638 4.01426 4.08220 4.11461 4.30688 4.37150 4.39757 4.53422 4.69079 4.76063 4.79562 4.86242 4.89426 4.98935 5.00032 5.06242 5.11085 5.12883 5.15207 5.18856 5.25352 5.25500 5.28438 5.35236 5.43956 5.50526 5.55085 5.67204 5.91011 5.98605 6.29722 6.41063 6.57367 6.89748 7.46106 8.97802 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.040836 B = 0.004633 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.503803 B = 6042.501991 C = 6422.980230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.053 0.947 9 C 0.041 3.959 10 H -0.005 1.005 11 C -0.086 4.086 12 C -0.098 4.098 13 C 0.094 3.906 14 H 0.036 0.964 15 N -0.674 5.674 16 C 0.114 3.886 17 H 0.034 0.966 18 C -0.112 4.112 19 C -0.117 4.117 20 C -0.080 4.080 21 C -0.138 4.138 22 C -0.168 4.168 23 C -0.164 4.164 24 C -0.105 4.105 25 H 0.260 0.740 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.341 0.659 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.200 -19.280 4.160 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.022 3.978 10 H 0.013 0.987 11 C -0.125 4.125 12 C -0.136 4.136 13 C -0.015 4.015 14 H 0.054 0.946 15 N -0.308 5.308 16 C 0.005 3.995 17 H 0.051 0.949 18 C -0.150 4.150 19 C -0.154 4.154 20 C -0.117 4.117 21 C -0.139 4.139 22 C -0.205 4.205 23 C -0.201 4.201 24 C -0.143 4.143 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.163 0.837 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.896 -18.961 4.792 19.942 hybrid contribution 0.034 1.194 -1.175 1.675 sum 3.931 -17.767 3.617 18.553 Atomic orbital electron populations 1.70103 1.07319 1.27212 1.51423 1.25785 0.95660 1.02493 0.94845 0.85679 0.78420 0.79074 0.78896 1.19525 1.21012 1.19600 1.21516 0.92954 0.92032 1.50581 0.92854 1.19370 0.92884 0.92572 0.92993 0.98658 1.21853 0.98438 0.93970 0.98242 1.22115 0.98073 0.94591 0.98844 1.22304 0.93885 0.91509 0.93837 0.94635 1.60740 1.06948 1.06593 1.56530 1.21707 0.93466 0.87057 0.97287 0.94855 1.22415 0.98532 0.97654 0.96440 1.22440 0.96581 0.95087 1.01320 1.21810 0.96645 0.99583 0.93662 1.21927 0.96879 0.98843 0.96224 1.22927 0.92511 1.01316 1.03782 1.23075 1.02945 0.98550 0.95554 1.22579 0.98143 0.94828 0.98701 0.93155 0.95474 0.95491 0.91651 0.93020 0.83665 0.91594 0.92648 0.90432 0.91026 0.91294 0.90311 0.89311 0.87348 0.87055 0.89548 0.93017 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.25 12.49 21.45 0.27 -54.98 16 2 C 0.01 0.61 5.34 84.66 0.45 1.06 16 3 Si 0.95 44.67 29.54 68.60 2.03 46.70 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.53 -30.32 8.38 25.60 0.21 -30.10 16 8 H 0.05 2.96 7.77 -2.91 -0.02 2.94 16 9 C 0.04 2.12 2.75 -10.47 -0.03 2.09 16 10 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 11 C -0.09 -4.28 5.50 31.32 0.17 -4.11 16 12 C -0.10 -3.85 5.66 31.32 0.18 -3.68 16 13 C 0.09 3.42 3.16 46.05 0.15 3.56 16 14 H 0.04 1.30 7.53 -2.39 -0.02 1.29 16 15 N -0.67 -20.29 6.09 -460.49 -2.80 -23.10 16 16 C 0.11 2.94 3.10 45.55 0.14 3.08 16 17 H 0.03 0.93 7.51 -2.38 -0.02 0.91 16 18 C -0.11 -2.73 5.67 31.72 0.18 -2.55 16 19 C -0.12 -2.13 6.91 31.93 0.22 -1.91 16 20 C -0.08 -1.40 6.58 31.57 0.21 -1.19 16 21 C -0.14 -2.83 2.35 -52.01 -0.12 -2.95 16 22 C -0.17 -3.17 9.65 30.48 0.29 -2.88 16 23 C -0.16 -2.89 10.24 30.49 0.31 -2.58 16 24 C -0.10 -4.39 5.72 31.94 0.18 -4.21 16 25 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 26 H 0.03 1.42 7.83 -2.39 -0.02 1.41 16 27 H 0.03 1.42 8.00 -2.39 -0.02 1.40 16 28 H 0.06 2.51 7.98 -2.39 -0.02 2.49 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.34 9.66 5.71 -89.69 -0.51 9.14 16 31 H 0.07 1.80 7.99 -2.38 -0.02 1.78 16 32 H 0.05 1.38 8.14 -2.38 -0.02 1.37 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.08 1.12 8.11 -2.39 -0.02 1.10 16 37 H 0.09 1.82 6.28 -2.39 -0.02 1.80 16 38 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.06 2.61 8.05 -2.39 -0.02 2.59 16 Total: -1.00 -61.36 322.95 2.50 -58.86 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.46 Total: 18.86 kcal Atomic # 6 Polarization: -48.89 SS G_CDS: 2.55 Total: -46.34 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -2.54 Total: -78.08 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -61.36 2.50 -58.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595040590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.194 kcal (2) G-P(sol) polarization free energy of solvation -61.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds