Wall clock time and date at job start Mon Mar 30 2020 05:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00372 * 2 1 4 4 H 1.48492 * 109.47608 * 240.00046 * 3 2 1 5 5 H 1.48506 * 109.46921 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47251 * 119.99581 * 3 2 1 7 7 C 1.38809 * 119.99493 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00274 * 159.66790 * 7 2 1 9 9 N 1.36940 * 120.00053 * 339.65635 * 7 2 1 10 10 C 1.46494 * 120.00233 * 321.45623 * 9 7 2 11 11 C 1.52998 * 109.47168 * 269.99546 * 10 9 7 12 12 H 1.09002 * 110.67480 * 308.23431 * 11 10 9 13 13 C 1.54891 * 110.75881 * 184.99938 * 11 10 9 14 14 C 1.54268 * 104.19828 * 203.74364 * 13 11 10 15 15 H 1.08995 * 117.41196 * 163.58990 * 14 13 11 16 16 C 1.53001 * 118.19652 * 318.21960 * 14 13 11 17 17 C 1.53878 * 106.59603 * 23.60855 * 14 13 11 18 18 H 1.09001 * 121.32720 * 138.62710 * 17 14 13 19 19 C 1.54269 * 106.60011 * 0.02562 * 17 14 13 20 20 C 1.46504 * 119.99431 * 141.45373 * 9 7 2 21 21 C 1.54957 * 110.92491 * 310.63382 * 20 9 7 22 22 C 1.54263 * 104.16462 * 156.29825 * 21 20 9 23 23 C 1.53878 * 106.63718 * 336.44829 * 22 21 20 24 24 C 1.54263 * 106.59856 * 359.97342 * 23 22 21 25 25 H 0.96999 * 119.99285 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47126 * 29.99432 * 10 9 7 27 27 H 1.09002 * 109.47218 * 150.00110 * 10 9 7 28 28 H 1.09000 * 110.48562 * 322.42244 * 13 11 10 29 29 H 1.09006 * 110.48314 * 85.06833 * 13 11 10 30 30 H 1.09003 * 117.45963 * 201.20997 * 16 14 13 31 31 H 1.09002 * 117.46104 * 346.01833 * 16 14 13 32 32 H 1.09000 * 110.48242 * 217.70898 * 19 17 14 33 33 H 1.08995 * 110.48424 * 95.06553 * 19 17 14 34 34 H 1.09005 * 110.66799 * 187.33552 * 20 9 7 35 35 H 1.09004 * 110.48045 * 37.64325 * 21 20 9 36 36 H 1.09001 * 110.53584 * 274.98008 * 21 20 9 37 37 H 1.08994 * 110.03746 * 217.13652 * 22 21 20 38 38 H 1.08999 * 110.03209 * 95.75300 * 22 21 20 39 39 H 1.09001 * 110.03069 * 119.25654 * 23 22 21 40 40 H 1.08997 * 110.03219 * 240.64303 * 23 22 21 41 41 H 1.08999 * 110.48853 * 142.28970 * 24 23 22 42 42 H 1.08999 * 110.48731 * 264.93198 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0397 -1.2313 -0.3255 9 7 1.3895 -2.3513 0.4112 10 6 0.4630 -2.3173 1.5455 11 6 1.2342 -2.5734 2.8418 12 1 1.8372 -3.4776 2.7586 13 6 0.2659 -2.6684 4.0470 14 6 1.1421 -2.3111 5.2654 15 1 0.6308 -2.0442 6.1902 16 6 2.5575 -2.8883 5.3321 17 6 2.3180 -1.4747 4.7310 18 1 2.6787 -0.5968 5.2670 19 6 2.1149 -1.3523 3.2067 20 6 1.6520 -3.6146 -0.2827 21 6 1.5091 -3.4437 -1.8162 22 6 2.3682 -4.5819 -2.4045 23 6 3.4013 -4.9561 -1.3272 24 6 3.1349 -4.0318 -0.1212 25 1 -0.4849 0.8401 0.0004 26 1 -0.0155 -1.3392 1.5946 27 1 -0.2973 -3.0878 1.4168 28 1 -0.5484 -1.9518 3.9395 29 1 -0.1258 -3.6811 4.1427 30 1 3.0341 -2.9389 6.3111 31 1 2.8014 -3.7016 4.6485 32 1 3.0726 -1.4048 2.6889 33 1 1.5993 -0.4232 2.9639 34 1 0.9881 -4.3987 0.0815 35 1 1.8949 -2.4736 -2.1294 36 1 0.4678 -3.5567 -2.1181 37 1 2.8761 -4.2389 -3.3057 38 1 1.7405 -5.4428 -2.6348 39 1 3.2743 -5.9983 -1.0341 40 1 4.4106 -4.7953 -1.7059 41 1 3.2792 -4.5733 0.8137 42 1 3.7837 -3.1569 -0.1604 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595328330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:46 Heat of formation + Delta-G solvation = 24.597324 kcal Electronic energy + Delta-G solvation = -19483.896152 eV Core-core repulsion = 16850.085857 eV Total energy + Delta-G solvation = -2633.810295 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.04897 -37.49496 -34.47622 -31.54660 -30.33695 -27.82415 -27.54144 -26.56312 -25.53062 -22.87714 -21.18202 -19.51347 -19.34884 -19.04032 -18.50293 -16.36034 -15.49990 -15.13187 -14.75939 -14.36454 -14.12860 -13.16275 -13.01793 -12.68710 -12.49942 -12.35592 -12.03537 -11.50572 -11.10999 -11.09735 -10.82943 -10.74730 -10.63814 -10.45522 -10.34341 -10.28770 -10.10221 -9.92127 -9.88333 -9.68890 -9.55653 -9.37713 -9.29389 -8.98313 -8.36339 -6.41865 -5.70339 -3.28770 3.38965 3.45147 3.47956 4.10372 4.51990 5.01369 5.15099 5.33321 5.34356 5.38915 5.44567 5.51144 5.64576 5.76969 5.88142 6.02295 6.13152 6.19605 6.22882 6.25133 6.26962 6.29207 6.44070 6.47518 6.54957 6.58026 6.61476 6.64381 6.66990 6.71701 6.85833 6.96920 7.05540 7.08964 7.14514 7.20356 7.30050 7.41314 7.80535 7.90702 8.61872 9.29186 9.91630 10.51177 11.28514 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.014824 B = 0.010167 C = 0.007117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.367153 B = 2753.325145 C = 3933.330951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.016 3.984 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.057 0.943 9 N -0.574 5.574 10 C 0.155 3.845 11 C -0.106 4.106 12 H 0.057 0.943 13 C -0.091 4.091 14 C -0.169 4.169 15 H 0.096 0.904 16 C -0.162 4.162 17 C -0.168 4.168 18 H 0.098 0.902 19 C -0.066 4.066 20 C 0.172 3.828 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.136 4.136 25 H 0.253 0.747 26 H 0.095 0.905 27 H 0.020 0.980 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 -6.532 4.752 8.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.184 4.184 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.074 0.926 9 N -0.292 5.292 10 C 0.029 3.971 11 C -0.127 4.127 12 H 0.075 0.925 13 C -0.129 4.129 14 C -0.187 4.187 15 H 0.114 0.886 16 C -0.199 4.199 17 C -0.187 4.187 18 H 0.116 0.884 19 C -0.103 4.103 20 C 0.064 3.936 21 C -0.166 4.166 22 C -0.162 4.162 23 C -0.159 4.159 24 C -0.176 4.176 25 H 0.063 0.937 26 H 0.113 0.887 27 H 0.038 0.962 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.679 -6.363 4.727 8.367 hybrid contribution 0.510 0.925 0.133 1.065 sum 3.189 -5.438 4.860 7.960 Atomic orbital electron populations 1.69982 1.05430 1.25504 1.52098 1.25108 0.94849 0.98269 1.00181 0.86651 0.79397 0.84102 0.78362 1.20888 1.21796 1.20754 1.18748 0.93379 0.85099 1.40083 0.92579 1.43750 1.51397 1.03302 1.30703 1.20926 0.90360 1.02123 0.83690 1.22773 0.96646 0.97238 0.96033 0.92490 1.21966 0.97756 1.00259 0.92946 1.23131 0.90354 1.05845 0.99359 0.88565 1.23190 0.98537 0.96987 1.01217 1.23763 1.03334 0.93544 0.98011 0.88367 1.21740 1.00178 0.98941 0.89480 1.21358 0.92550 0.88756 0.90895 1.22650 0.97995 0.98306 0.97631 1.22089 0.97591 0.98731 0.97740 1.22051 0.98289 0.98778 0.96756 1.22795 1.00831 0.98408 0.95573 0.93704 0.88725 0.96194 0.91240 0.92708 0.89467 0.89140 0.91614 0.91029 0.93263 0.90271 0.93292 0.93072 0.93214 0.93162 0.93120 0.93523 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.62 11.47 55.49 0.64 -23.98 16 2 C 0.02 0.42 4.97 -17.43 -0.09 0.33 16 3 Si 0.89 21.11 29.60 -169.99 -5.03 16.08 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.24 -6.19 6.93 -15.06 -0.10 -6.30 16 8 H 0.06 1.47 6.95 -52.49 -0.36 1.11 16 9 N -0.57 -13.40 2.46 -163.36 -0.40 -13.80 16 10 C 0.16 3.49 4.81 -4.05 -0.02 3.47 16 11 C -0.11 -2.05 2.65 -88.61 -0.23 -2.28 16 12 H 0.06 1.12 7.42 -51.93 -0.39 0.73 16 13 C -0.09 -1.54 6.21 -25.07 -0.16 -1.69 16 14 C -0.17 -2.62 6.97 -89.50 -0.62 -3.24 16 15 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 16 C -0.16 -2.39 9.94 -25.42 -0.25 -2.65 16 17 C -0.17 -2.81 7.16 -88.19 -0.63 -3.44 16 18 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 19 C -0.07 -1.31 5.45 -25.06 -0.14 -1.44 16 20 C 0.17 3.56 3.43 -65.90 -0.23 3.33 16 21 C -0.13 -2.54 6.32 -25.04 -0.16 -2.70 16 22 C -0.12 -2.02 6.80 -25.61 -0.17 -2.20 16 23 C -0.12 -1.91 6.80 -25.61 -0.17 -2.09 16 24 C -0.14 -2.52 6.41 -25.07 -0.16 -2.68 16 25 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.10 2.42 5.39 -51.93 -0.28 2.14 16 27 H 0.02 0.44 7.90 -51.93 -0.41 0.03 16 28 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.38 7.27 -51.93 -0.38 1.00 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.07 1.58 7.94 -51.93 -0.41 1.17 16 34 H 0.05 0.99 7.84 -51.93 -0.41 0.59 16 35 H 0.08 1.80 6.99 -51.93 -0.36 1.44 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.39 6.85 -51.93 -0.36 1.04 16 LS Contribution 320.17 15.07 4.82 4.82 Total: -1.00 -26.08 320.17 -10.67 -36.75 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.56 Total: 3.71 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -3.14 Total: -23.58 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.24 Total: -37.78 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.08 -10.67 -36.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595328330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.343 kcal (2) G-P(sol) polarization free energy of solvation -26.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds