Wall clock time and date at job start Mon Mar 30 2020 05:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00372 * 2 1 4 4 H 1.48492 * 109.47608 * 240.00046 * 3 2 1 5 5 H 1.48506 * 109.46921 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47251 * 119.99581 * 3 2 1 7 7 C 1.38809 * 119.99493 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00274 * 159.66790 * 7 2 1 9 9 N 1.36940 * 120.00053 * 339.65635 * 7 2 1 10 10 C 1.46494 * 120.00233 * 321.45623 * 9 7 2 11 11 C 1.52998 * 109.47168 * 269.99546 * 10 9 7 12 12 H 1.09002 * 110.67480 * 308.23431 * 11 10 9 13 13 C 1.54891 * 110.75881 * 184.99938 * 11 10 9 14 14 C 1.54268 * 104.19828 * 203.74364 * 13 11 10 15 15 H 1.08995 * 117.41196 * 163.58990 * 14 13 11 16 16 C 1.53001 * 118.19652 * 318.21960 * 14 13 11 17 17 C 1.53878 * 106.59603 * 23.60855 * 14 13 11 18 18 H 1.09001 * 121.32720 * 138.62710 * 17 14 13 19 19 C 1.54269 * 106.60011 * 0.02562 * 17 14 13 20 20 C 1.46504 * 119.99431 * 141.45373 * 9 7 2 21 21 C 1.54957 * 110.92491 * 310.63382 * 20 9 7 22 22 C 1.54263 * 104.16462 * 156.29825 * 21 20 9 23 23 C 1.53878 * 106.63718 * 336.44829 * 22 21 20 24 24 C 1.54263 * 106.59856 * 359.97342 * 23 22 21 25 25 H 0.96999 * 119.99285 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47126 * 29.99432 * 10 9 7 27 27 H 1.09002 * 109.47218 * 150.00110 * 10 9 7 28 28 H 1.09000 * 110.48562 * 322.42244 * 13 11 10 29 29 H 1.09006 * 110.48314 * 85.06833 * 13 11 10 30 30 H 1.09003 * 117.45963 * 201.20997 * 16 14 13 31 31 H 1.09002 * 117.46104 * 346.01833 * 16 14 13 32 32 H 1.09000 * 110.48242 * 217.70898 * 19 17 14 33 33 H 1.08995 * 110.48424 * 95.06553 * 19 17 14 34 34 H 1.09005 * 110.66799 * 187.33552 * 20 9 7 35 35 H 1.09004 * 110.48045 * 37.64325 * 21 20 9 36 36 H 1.09001 * 110.53584 * 274.98008 * 21 20 9 37 37 H 1.08994 * 110.03746 * 217.13652 * 22 21 20 38 38 H 1.08999 * 110.03209 * 95.75300 * 22 21 20 39 39 H 1.09001 * 110.03069 * 119.25654 * 23 22 21 40 40 H 1.08997 * 110.03219 * 240.64303 * 23 22 21 41 41 H 1.08999 * 110.48853 * 142.28970 * 24 23 22 42 42 H 1.08999 * 110.48731 * 264.93198 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0397 -1.2313 -0.3255 9 7 1.3895 -2.3513 0.4112 10 6 0.4630 -2.3173 1.5455 11 6 1.2342 -2.5734 2.8418 12 1 1.8372 -3.4776 2.7586 13 6 0.2659 -2.6684 4.0470 14 6 1.1421 -2.3111 5.2654 15 1 0.6308 -2.0442 6.1902 16 6 2.5575 -2.8883 5.3321 17 6 2.3180 -1.4747 4.7310 18 1 2.6787 -0.5968 5.2670 19 6 2.1149 -1.3523 3.2067 20 6 1.6520 -3.6146 -0.2827 21 6 1.5091 -3.4437 -1.8162 22 6 2.3682 -4.5819 -2.4045 23 6 3.4013 -4.9561 -1.3272 24 6 3.1349 -4.0318 -0.1212 25 1 -0.4849 0.8401 0.0004 26 1 -0.0155 -1.3392 1.5946 27 1 -0.2973 -3.0878 1.4168 28 1 -0.5484 -1.9518 3.9395 29 1 -0.1258 -3.6811 4.1427 30 1 3.0341 -2.9389 6.3111 31 1 2.8014 -3.7016 4.6485 32 1 3.0726 -1.4048 2.6889 33 1 1.5993 -0.4232 2.9639 34 1 0.9881 -4.3987 0.0815 35 1 1.8949 -2.4736 -2.1294 36 1 0.4678 -3.5567 -2.1181 37 1 2.8761 -4.2389 -3.3057 38 1 1.7405 -5.4428 -2.6348 39 1 3.2743 -5.9983 -1.0341 40 1 4.4106 -4.7953 -1.7059 41 1 3.2792 -4.5733 0.8137 42 1 3.7837 -3.1569 -0.1604 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595328330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:46 Heat of formation + Delta-G solvation = 14.175960 kcal Electronic energy + Delta-G solvation = -19484.348056 eV Core-core repulsion = 16850.085857 eV Total energy + Delta-G solvation = -2634.262199 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48216 -39.06157 -36.18518 -33.38091 -31.97838 -29.32744 -29.00533 -28.14614 -27.37554 -24.49983 -22.72912 -21.10043 -20.87419 -20.39582 -20.00524 -18.21077 -17.13368 -16.54111 -16.50541 -15.99890 -15.82694 -14.83426 -14.36322 -14.32805 -14.03676 -13.87825 -13.58643 -13.15213 -13.00480 -12.71646 -12.64325 -12.33132 -12.18308 -12.03523 -11.90798 -11.79613 -11.77887 -11.56867 -11.51504 -11.13333 -11.10020 -10.99796 -10.81059 -10.37473 -10.32738 -8.38222 -7.71188 -5.32972 1.43338 1.46785 1.51233 2.53842 2.84681 3.32629 3.60654 3.70825 3.89623 4.03269 4.04848 4.13014 4.25687 4.30078 4.47025 4.66562 4.73888 4.76306 4.77266 4.79831 4.89420 4.94687 4.95341 4.99870 5.01881 5.10885 5.18974 5.22624 5.24754 5.31225 5.33840 5.38817 5.45177 5.51549 5.58076 5.61680 5.67246 5.72761 5.80156 5.96716 6.58375 7.29537 8.00202 8.52890 9.22833 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.014824 B = 0.010167 C = 0.007117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.367153 B = 2753.325145 C = 3933.330951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.027 4.027 3 Si 0.932 3.068 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.046 0.954 9 N -0.587 5.587 10 C 0.158 3.842 11 C -0.096 4.096 12 H 0.059 0.941 13 C -0.089 4.089 14 C -0.161 4.161 15 H 0.120 0.880 16 C -0.141 4.141 17 C -0.188 4.188 18 H 0.109 0.891 19 C -0.061 4.061 20 C 0.162 3.838 21 C -0.126 4.126 22 C -0.115 4.115 23 C -0.113 4.113 24 C -0.128 4.128 25 H 0.247 0.753 26 H 0.063 0.937 27 H 0.018 0.982 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.927 -8.556 5.988 11.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.224 4.224 3 Si 0.761 3.239 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.064 0.936 9 N -0.305 5.305 10 C 0.031 3.969 11 C -0.116 4.116 12 H 0.077 0.923 13 C -0.127 4.127 14 C -0.179 4.179 15 H 0.138 0.862 16 C -0.178 4.178 17 C -0.206 4.206 18 H 0.127 0.873 19 C -0.099 4.099 20 C 0.055 3.945 21 C -0.165 4.165 22 C -0.153 4.153 23 C -0.151 4.151 24 C -0.168 4.168 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.136 0.864 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.784 -8.407 5.961 10.979 hybrid contribution 0.162 1.505 -0.285 1.540 sum 3.947 -6.902 5.676 9.769 Atomic orbital electron populations 1.70097 1.06457 1.25396 1.54225 1.25573 0.95318 1.00421 1.01070 0.85899 0.78307 0.81421 0.78262 1.20576 1.22303 1.20602 1.18750 0.92829 0.86028 1.38368 0.93633 1.43934 1.51284 1.03762 1.31547 1.20818 0.90598 1.00240 0.85196 1.22546 0.96769 0.96868 0.95456 0.92297 1.21915 0.97175 1.01135 0.92483 1.23192 0.90265 1.05055 0.99340 0.86190 1.23306 0.97532 0.94782 1.02152 1.23660 1.05779 0.95652 0.95530 0.87313 1.21525 0.98511 0.97588 0.92274 1.21578 0.94272 0.87649 0.90975 1.22562 0.98043 0.98282 0.97623 1.22037 0.97409 0.97770 0.98061 1.22024 0.98753 0.99333 0.94969 1.22649 0.98291 0.98216 0.97614 0.94401 0.91938 0.96350 0.92209 0.90921 0.86420 0.89555 0.93967 0.94401 0.92544 0.93716 0.94373 0.92100 0.91020 0.90638 0.91775 0.92572 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.10 11.47 21.65 0.25 -52.85 16 2 C -0.03 -1.47 4.97 84.86 0.42 -1.05 16 3 Si 0.93 44.87 29.60 68.60 2.03 46.90 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.23 -12.09 6.93 84.03 0.58 -11.51 16 8 H 0.05 2.48 6.95 -2.91 -0.02 2.46 16 9 N -0.59 -28.16 2.46 -670.76 -1.65 -29.81 16 10 C 0.16 7.28 4.81 86.38 0.42 7.70 16 11 C -0.10 -3.70 2.65 -9.49 -0.03 -3.72 16 12 H 0.06 2.25 7.42 -2.39 -0.02 2.24 16 13 C -0.09 -2.88 6.21 31.67 0.20 -2.69 16 14 C -0.16 -4.53 6.97 -10.07 -0.07 -4.60 16 15 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 16 C -0.14 -3.67 9.94 31.44 0.31 -3.36 16 17 C -0.19 -5.99 7.16 -9.22 -0.07 -6.06 16 18 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 19 C -0.06 -2.48 5.45 31.68 0.17 -2.31 16 20 C 0.16 6.68 3.43 46.31 0.16 6.84 16 21 C -0.13 -5.07 6.32 31.69 0.20 -4.87 16 22 C -0.11 -3.50 6.80 31.32 0.21 -3.28 16 23 C -0.11 -3.24 6.80 31.32 0.21 -3.02 16 24 C -0.13 -4.59 6.41 31.67 0.20 -4.38 16 25 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 26 H 0.06 3.35 5.39 -2.39 -0.01 3.34 16 27 H 0.02 0.82 7.90 -2.39 -0.02 0.80 16 28 H 0.06 2.05 8.05 -2.39 -0.02 2.03 16 29 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.09 2.35 7.27 -2.39 -0.02 2.33 16 32 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.04 1.75 7.94 -2.39 -0.02 1.73 16 34 H 0.06 2.23 7.84 -2.38 -0.02 2.21 16 35 H 0.04 2.09 6.99 -2.38 -0.02 2.07 16 36 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.04 1.78 6.85 -2.39 -0.02 1.76 16 Total: -1.00 -58.22 320.17 4.52 -53.70 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.96 Total: 18.37 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 2.93 Total: -36.31 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -1.40 Total: -82.66 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -58.22 4.52 -53.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595328330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.878 kcal (2) G-P(sol) polarization free energy of solvation -58.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds