Wall clock time and date at job start Mon Mar 30 2020 06:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00145 * 2 1 4 4 H 1.48501 * 109.47017 * 240.00631 * 3 2 1 5 5 H 1.48505 * 109.47015 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47395 * 120.00227 * 3 2 1 7 7 C 1.37874 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00003 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00303 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.50098 * 60.07955 * 9 7 2 11 11 C 1.53115 * 109.50252 * 300.00350 * 9 7 2 12 12 C 1.53122 * 109.15963 * 182.40281 * 11 9 7 13 13 C 1.53030 * 109.27789 * 57.65353 * 12 11 9 14 14 N 1.46843 * 109.52479 * 300.81931 * 13 12 11 15 15 C 1.46906 * 111.00342 * 185.84097 * 14 13 12 16 16 C 1.53001 * 109.46798 * 66.04560 * 15 14 13 17 17 H 1.09002 * 110.67461 * 305.70128 * 16 15 14 18 18 C 1.54888 * 110.75312 * 182.46681 * 16 15 14 19 19 C 1.54262 * 104.19473 * 203.55777 * 18 16 15 20 20 H 1.09006 * 117.41116 * 163.58822 * 19 18 16 21 21 C 1.52995 * 118.20145 * 318.22061 * 19 18 16 22 22 C 1.53870 * 106.60067 * 23.61436 * 19 18 16 23 23 H 1.08997 * 121.33844 * 138.63093 * 22 19 18 24 24 C 1.54267 * 106.59681 * 359.97438 * 22 19 18 25 25 C 1.46850 * 111.19872 * 61.74145 * 14 13 12 26 26 H 0.97003 * 119.99792 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.52532 * 62.49651 * 11 9 7 28 28 H 1.08998 * 109.52146 * 302.30716 * 11 9 7 29 29 H 1.08995 * 109.50023 * 297.71076 * 12 11 9 30 30 H 1.08998 * 109.53403 * 177.61555 * 12 11 9 31 31 H 1.09004 * 109.46382 * 180.80408 * 13 12 11 32 32 H 1.09001 * 109.45995 * 60.83075 * 13 12 11 33 33 H 1.08995 * 109.46863 * 306.04656 * 15 14 13 34 34 H 1.09003 * 109.47065 * 186.04580 * 15 14 13 35 35 H 1.09000 * 110.48809 * 322.23620 * 18 16 15 36 36 H 1.09004 * 110.48794 * 84.74931 * 18 16 15 37 37 H 1.09004 * 117.46357 * 201.21524 * 21 19 18 38 38 H 1.08998 * 117.46283 * 346.03966 * 21 19 18 39 39 H 1.09000 * 110.48921 * 217.71244 * 24 22 19 40 40 H 1.09001 * 110.48509 * 95.07505 * 24 22 19 41 41 H 1.09003 * 109.45985 * 58.27594 * 25 14 13 42 42 H 1.08996 * 109.46198 * 178.24293 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6249 -2.5579 -0.8909 11 6 0.3709 -2.5813 1.2497 12 6 -0.3448 -3.9348 1.2724 13 6 0.6953 -5.0569 1.2399 14 7 1.5111 -4.9347 0.0250 15 6 2.4286 -6.0741 -0.1098 16 6 1.6221 -7.3538 -0.3400 17 1 0.8791 -7.4871 0.4463 18 6 2.5584 -8.5847 -0.4250 19 6 1.7474 -9.6220 -1.2287 20 1 2.2922 -10.4656 -1.6528 21 6 0.2572 -9.7735 -0.9173 22 6 0.7241 -8.8304 -2.0616 23 1 0.5082 -9.0963 -3.0964 24 6 0.9485 -7.3396 -1.7344 25 6 2.2448 -3.6629 0.0037 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3671 -1.7793 1.2290 28 1 0.9924 -2.4829 2.1397 29 1 -0.9959 -4.0167 0.4022 30 1 -0.9404 -4.0169 2.1816 31 1 0.1886 -6.0220 1.2415 32 1 1.3374 -4.9824 2.1175 33 1 3.0185 -6.1753 0.8011 34 1 3.0939 -5.9066 -0.9568 35 1 3.4782 -8.3289 -0.9509 36 1 2.7829 -8.9629 0.5724 37 1 -0.2245 -10.7074 -1.2070 38 1 -0.1129 -9.3197 0.0020 39 1 -0.0036 -6.8105 -1.6932 40 1 1.6084 -6.8824 -2.4717 41 1 2.8797 -3.5950 0.8872 42 1 2.8635 -3.6155 -0.8924 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595615059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:49 Heat of formation + Delta-G solvation = 9.979742 kcal Electronic energy + Delta-G solvation = -18805.134897 eV Core-core repulsion = 16170.690736 eV Total energy + Delta-G solvation = -2634.444160 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73150 -37.90852 -34.10142 -32.27339 -30.59106 -29.71865 -28.13029 -25.67270 -24.92838 -22.83231 -21.71028 -20.99287 -19.63974 -18.97605 -18.50707 -16.42460 -15.87650 -15.49051 -14.81192 -14.44148 -13.84470 -13.57388 -13.29462 -13.13041 -12.90646 -12.54293 -12.28799 -12.02421 -11.88437 -11.35696 -11.28880 -10.92911 -10.88901 -10.79881 -10.62677 -10.55602 -10.36658 -10.02158 -9.98351 -9.79212 -9.50982 -9.41313 -8.95364 -8.66853 -8.26484 -7.57631 -5.94092 -4.00291 3.34113 3.38767 3.41185 3.65582 4.37654 4.49499 4.52095 4.76595 4.89946 5.04156 5.20496 5.35745 5.48446 5.53062 5.55060 5.64360 5.73739 5.78907 5.88186 5.93170 5.99023 6.03956 6.06813 6.13410 6.17644 6.28907 6.33733 6.45073 6.47737 6.56320 6.57036 6.76828 6.80280 7.02105 7.26854 7.45263 7.73508 7.79112 7.89502 8.13006 8.21759 8.52237 9.03649 9.63772 11.11762 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.043550 B = 0.004604 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.781520 B = 6080.663266 C = 6261.652607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.056 3.944 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.062 3.938 14 N -0.535 5.535 15 C 0.064 3.936 16 C -0.092 4.092 17 H 0.076 0.924 18 C -0.092 4.092 19 C -0.168 4.168 20 H 0.103 0.897 21 C -0.159 4.159 22 C -0.167 4.167 23 H 0.106 0.894 24 C -0.076 4.076 25 C 0.068 3.932 26 H 0.260 0.740 27 H 0.090 0.910 28 H 0.028 0.972 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.020 0.980 33 H 0.024 0.976 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.017 0.983 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.633 -16.444 -0.487 16.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.066 4.066 14 N -0.259 5.259 15 C -0.064 4.064 16 C -0.110 4.110 17 H 0.094 0.906 18 C -0.129 4.129 19 C -0.186 4.186 20 H 0.121 0.879 21 C -0.196 4.196 22 C -0.185 4.185 23 H 0.124 0.876 24 C -0.113 4.113 25 C -0.059 4.059 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.035 0.965 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.179 -16.300 -0.895 16.367 hybrid contribution 1.089 0.831 0.714 1.545 sum 2.268 -15.469 -0.181 15.636 Atomic orbital electron populations 1.69885 1.05825 1.26367 1.50658 1.24926 0.94816 0.98887 0.95160 0.86701 0.79624 0.83361 0.78527 1.20323 1.21325 1.20417 1.21127 0.92768 0.90762 1.50739 0.92968 1.18647 0.92608 0.90256 0.94812 0.94805 1.21648 1.00006 0.94732 0.98445 1.21668 0.97203 0.96543 1.00067 1.22056 0.95704 0.98640 0.90209 1.61977 1.24053 1.02143 1.37768 1.22035 0.94111 0.90481 0.99805 1.22149 0.97312 0.93469 0.98101 0.90602 1.21951 0.97912 0.93719 0.99366 1.23108 0.91185 1.00490 1.03854 0.87913 1.23253 0.96114 1.00465 0.99803 1.23645 1.04758 0.93998 0.96099 0.87606 1.21792 1.01157 0.92313 0.96072 1.22297 0.96384 0.88631 0.98576 0.93042 0.89168 0.95285 0.92144 0.93718 0.92345 0.96187 0.95755 0.91213 0.90998 0.91922 0.88846 0.88961 0.90873 0.90943 0.96508 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 11.35 55.43 0.63 -24.89 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.25 8.56 -34.44 -0.29 -14.54 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 9 C 0.06 1.40 2.26 -91.70 -0.21 1.20 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.64 5.02 -26.61 -0.13 -2.78 16 12 C -0.12 -2.32 6.09 -26.65 -0.16 -2.48 16 13 C 0.06 1.10 5.30 -3.84 -0.02 1.08 16 14 N -0.54 -9.86 4.53 -234.67 -1.06 -10.93 16 15 C 0.06 0.97 4.40 -3.82 -0.02 0.95 16 16 C -0.09 -1.18 2.34 -88.64 -0.21 -1.39 16 17 H 0.08 1.02 5.56 -51.93 -0.29 0.73 16 18 C -0.09 -1.01 6.21 -25.07 -0.16 -1.16 16 19 C -0.17 -1.75 6.97 -89.51 -0.62 -2.37 16 20 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 21 C -0.16 -1.63 9.94 -25.42 -0.25 -1.88 16 22 C -0.17 -1.86 7.16 -88.19 -0.63 -2.49 16 23 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 24 C -0.08 -0.99 6.11 -25.08 -0.15 -1.14 16 25 C 0.07 1.46 4.68 -3.84 -0.02 1.45 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.92 6.15 -51.93 -0.32 0.60 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 35 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.98 7.27 -51.93 -0.38 0.61 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.07 0.98 7.98 -51.93 -0.41 0.56 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 1.23 8.01 -51.93 -0.42 0.81 16 LS Contribution 317.90 15.07 4.79 4.79 Total: -1.00 -27.76 317.90 -11.21 -38.97 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.58 Total: -0.40 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -2.97 Total: -23.91 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.43 Total: -35.82 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.76 -11.21 -38.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595615059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.950 kcal (2) G-P(sol) polarization free energy of solvation -27.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds