Wall clock time and date at job start Mon Mar 30 2020 06:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00145 * 2 1 4 4 H 1.48501 * 109.47017 * 240.00631 * 3 2 1 5 5 H 1.48505 * 109.47015 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47395 * 120.00227 * 3 2 1 7 7 C 1.37874 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00003 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00303 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.50098 * 60.07955 * 9 7 2 11 11 C 1.53115 * 109.50252 * 300.00350 * 9 7 2 12 12 C 1.53122 * 109.15963 * 182.40281 * 11 9 7 13 13 C 1.53030 * 109.27789 * 57.65353 * 12 11 9 14 14 N 1.46843 * 109.52479 * 300.81931 * 13 12 11 15 15 C 1.46906 * 111.00342 * 185.84097 * 14 13 12 16 16 C 1.53001 * 109.46798 * 66.04560 * 15 14 13 17 17 H 1.09002 * 110.67461 * 305.70128 * 16 15 14 18 18 C 1.54888 * 110.75312 * 182.46681 * 16 15 14 19 19 C 1.54262 * 104.19473 * 203.55777 * 18 16 15 20 20 H 1.09006 * 117.41116 * 163.58822 * 19 18 16 21 21 C 1.52995 * 118.20145 * 318.22061 * 19 18 16 22 22 C 1.53870 * 106.60067 * 23.61436 * 19 18 16 23 23 H 1.08997 * 121.33844 * 138.63093 * 22 19 18 24 24 C 1.54267 * 106.59681 * 359.97438 * 22 19 18 25 25 C 1.46850 * 111.19872 * 61.74145 * 14 13 12 26 26 H 0.97003 * 119.99792 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.52532 * 62.49651 * 11 9 7 28 28 H 1.08998 * 109.52146 * 302.30716 * 11 9 7 29 29 H 1.08995 * 109.50023 * 297.71076 * 12 11 9 30 30 H 1.08998 * 109.53403 * 177.61555 * 12 11 9 31 31 H 1.09004 * 109.46382 * 180.80408 * 13 12 11 32 32 H 1.09001 * 109.45995 * 60.83075 * 13 12 11 33 33 H 1.08995 * 109.46863 * 306.04656 * 15 14 13 34 34 H 1.09003 * 109.47065 * 186.04580 * 15 14 13 35 35 H 1.09000 * 110.48809 * 322.23620 * 18 16 15 36 36 H 1.09004 * 110.48794 * 84.74931 * 18 16 15 37 37 H 1.09004 * 117.46357 * 201.21524 * 21 19 18 38 38 H 1.08998 * 117.46283 * 346.03966 * 21 19 18 39 39 H 1.09000 * 110.48921 * 217.71244 * 24 22 19 40 40 H 1.09001 * 110.48509 * 95.07505 * 24 22 19 41 41 H 1.09003 * 109.45985 * 58.27594 * 25 14 13 42 42 H 1.08996 * 109.46198 * 178.24293 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6249 -2.5579 -0.8909 11 6 0.3709 -2.5813 1.2497 12 6 -0.3448 -3.9348 1.2724 13 6 0.6953 -5.0569 1.2399 14 7 1.5111 -4.9347 0.0250 15 6 2.4286 -6.0741 -0.1098 16 6 1.6221 -7.3538 -0.3400 17 1 0.8791 -7.4871 0.4463 18 6 2.5584 -8.5847 -0.4250 19 6 1.7474 -9.6220 -1.2287 20 1 2.2922 -10.4656 -1.6528 21 6 0.2572 -9.7735 -0.9173 22 6 0.7241 -8.8304 -2.0616 23 1 0.5082 -9.0963 -3.0964 24 6 0.9485 -7.3396 -1.7344 25 6 2.2448 -3.6629 0.0037 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3671 -1.7793 1.2290 28 1 0.9924 -2.4829 2.1397 29 1 -0.9959 -4.0167 0.4022 30 1 -0.9404 -4.0169 2.1816 31 1 0.1886 -6.0220 1.2415 32 1 1.3374 -4.9824 2.1175 33 1 3.0185 -6.1753 0.8011 34 1 3.0939 -5.9066 -0.9568 35 1 3.4782 -8.3289 -0.9509 36 1 2.7829 -8.9629 0.5724 37 1 -0.2245 -10.7074 -1.2070 38 1 -0.1129 -9.3197 0.0020 39 1 -0.0036 -6.8105 -1.6932 40 1 1.6084 -6.8824 -2.4717 41 1 2.8797 -3.5950 0.8872 42 1 2.8635 -3.6155 -0.8924 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595615059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:48 Heat of formation + Delta-G solvation = -3.900938 kcal Electronic energy + Delta-G solvation = -18805.736808 eV Core-core repulsion = 16170.690736 eV Total energy + Delta-G solvation = -2635.046072 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.76132 -39.41261 -35.80569 -33.97215 -32.00544 -31.49178 -29.05642 -27.02766 -26.84526 -24.12171 -23.38997 -22.34764 -20.60109 -20.22082 -19.98231 -18.42119 -17.02696 -16.72769 -16.46957 -16.05474 -15.35322 -14.93805 -14.81390 -14.36666 -14.30991 -14.05384 -13.82724 -13.48458 -13.07757 -12.87364 -12.79144 -12.60282 -12.53278 -12.17544 -11.93920 -11.88615 -11.71235 -11.68217 -11.37431 -11.31015 -10.83608 -10.78088 -10.65437 -10.38328 -10.33490 -9.07640 -8.07242 -6.21765 1.41637 1.43036 1.50662 2.43128 2.83166 3.09739 3.19460 3.62695 3.78265 3.88889 4.11881 4.19612 4.25554 4.29758 4.46137 4.52000 4.55849 4.62039 4.65254 4.71435 4.81499 4.83367 4.88179 4.91143 5.00124 5.03279 5.10388 5.11408 5.16181 5.19123 5.31259 5.39337 5.42197 5.44567 5.52775 5.54259 5.63779 5.98003 6.13768 6.22744 6.40853 6.47492 6.90858 7.46089 8.97137 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.043550 B = 0.004604 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.781520 B = 6080.663266 C = 6261.652607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.051 0.949 9 C 0.054 3.946 10 H -0.004 1.004 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.067 3.933 14 N -0.543 5.543 15 C 0.066 3.934 16 C -0.086 4.086 17 H 0.075 0.925 18 C -0.088 4.088 19 C -0.162 4.162 20 H 0.119 0.881 21 C -0.155 4.155 22 C -0.179 4.179 23 H 0.113 0.887 24 C -0.077 4.077 25 C 0.082 3.918 26 H 0.260 0.740 27 H 0.057 0.943 28 H 0.021 0.979 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.023 0.977 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.013 0.987 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.430 -18.235 -0.038 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.069 0.931 9 C 0.035 3.965 10 H 0.014 0.986 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.061 4.061 14 N -0.268 5.268 15 C -0.062 4.062 16 C -0.104 4.104 17 H 0.093 0.907 18 C -0.126 4.126 19 C -0.179 4.179 20 H 0.137 0.863 21 C -0.191 4.191 22 C -0.197 4.197 23 H 0.131 0.869 24 C -0.114 4.114 25 C -0.046 4.046 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.031 0.969 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.982 -18.110 -0.446 18.223 hybrid contribution 0.816 1.387 0.552 1.701 sum 2.798 -16.723 0.106 16.955 Atomic orbital electron populations 1.70034 1.07188 1.27117 1.51128 1.25719 0.95656 1.02310 0.94733 0.85677 0.78430 0.79122 0.78802 1.19655 1.20881 1.19684 1.21509 0.92965 0.92264 1.50978 0.93117 1.18568 0.92968 0.91305 0.93676 0.98630 1.21456 0.99075 0.96292 0.97330 1.21578 0.97552 0.94904 1.00766 1.22038 0.95149 0.98960 0.89938 1.61913 1.24648 1.01868 1.38345 1.22103 0.93950 0.90026 1.00113 1.22074 0.97431 0.93143 0.97794 0.90706 1.21932 0.97621 0.92789 1.00260 1.23182 0.91246 1.00462 1.03060 0.86274 1.23351 0.96122 1.00671 0.98983 1.23607 1.06377 0.92732 0.97020 0.86852 1.21723 0.99904 0.93709 0.96104 1.21964 0.95283 0.89106 0.98212 0.93069 0.92421 0.96047 0.93201 0.91375 0.89490 0.95922 0.95068 0.91205 0.90583 0.90855 0.87087 0.89413 0.92926 0.91917 0.96920 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.02 11.35 21.45 0.24 -53.78 16 2 C 0.01 0.83 5.30 84.65 0.45 1.27 16 3 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.54 -30.51 8.56 25.60 0.22 -30.29 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.05 2.80 2.26 -11.49 -0.03 2.78 16 10 H 0.00 -0.27 8.14 -2.38 -0.02 -0.28 16 11 C -0.10 -5.08 5.02 30.67 0.15 -4.93 16 12 C -0.11 -4.34 6.09 30.65 0.19 -4.15 16 13 C 0.07 2.28 5.30 86.32 0.46 2.74 16 14 N -0.54 -19.74 4.53 -896.37 -4.06 -23.80 16 15 C 0.07 1.89 4.40 86.30 0.38 2.27 16 16 C -0.09 -2.05 2.34 -9.51 -0.02 -2.07 16 17 H 0.07 1.82 5.56 -2.39 -0.01 1.81 16 18 C -0.09 -1.69 6.21 31.67 0.20 -1.50 16 19 C -0.16 -2.87 6.97 -10.07 -0.07 -2.94 16 20 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 21 C -0.15 -2.72 9.94 31.44 0.31 -2.40 16 22 C -0.18 -3.65 7.16 -9.22 -0.07 -3.71 16 23 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 24 C -0.08 -1.94 6.11 31.66 0.19 -1.74 16 25 C 0.08 3.57 4.68 86.32 0.40 3.97 16 26 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 27 H 0.06 3.20 6.15 -2.38 -0.01 3.19 16 28 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.09 2.52 6.15 -2.38 -0.01 2.51 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.03 0.87 8.12 -2.39 -0.02 0.85 16 34 H 0.07 2.01 7.89 -2.39 -0.02 1.99 16 35 H 0.08 1.42 8.05 -2.39 -0.02 1.40 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.09 1.64 7.27 -2.39 -0.02 1.62 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.67 7.98 -2.39 -0.02 1.65 16 41 H 0.01 0.55 8.14 -2.39 -0.02 0.54 16 42 H 0.05 2.38 8.01 -2.39 -0.02 2.36 16 Total: -1.00 -60.59 317.90 1.94 -58.66 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.96 Total: 13.33 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 2.77 Total: -40.70 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -3.82 Total: -77.58 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -60.59 1.94 -58.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595615059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.756 kcal (2) G-P(sol) polarization free energy of solvation -60.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds