Wall clock time and date at job start Mon Mar 30 2020 06:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99820 * 2 1 4 4 H 1.48508 * 109.47150 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47271 * 299.99838 * 3 2 1 6 6 H 1.48501 * 109.47334 * 59.99936 * 3 2 1 7 7 C 1.37880 * 120.00449 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00299 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99569 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.53911 * 57.38731 * 9 7 2 11 11 C 1.54273 * 110.48449 * 294.77423 * 9 7 2 12 12 C 1.53869 * 106.59766 * 217.71178 * 11 9 7 13 13 C 1.54265 * 106.60001 * 0.02562 * 12 11 9 14 14 H 1.09005 * 110.59888 * 264.87381 * 13 12 11 15 15 N 1.46899 * 110.49106 * 142.28859 * 13 12 11 16 16 C 1.46901 * 111.00383 * 90.21962 * 15 13 12 17 17 H 1.08991 * 109.35200 * 324.72681 * 16 15 13 18 18 C 1.52881 * 109.23868 * 84.37905 * 16 15 13 19 19 C 1.50901 * 109.12103 * 174.14901 * 18 16 15 20 20 C 1.52872 * 109.85963 * 286.64189 * 19 18 16 21 21 C 1.52077 * 110.48674 * 53.53632 * 20 19 18 22 22 H 1.08999 * 114.63769 * 194.39085 * 21 20 19 23 23 C 1.52301 * 119.83867 * 49.56533 * 21 20 19 24 24 C 1.51361 * 60.10133 * 250.58546 * 23 21 20 25 25 H 1.09006 * 117.38120 * 252.66019 * 24 23 21 26 26 C 1.54887 * 110.48230 * 180.02562 * 9 7 2 27 27 H 0.96999 * 120.00219 * 359.97438 * 1 2 3 28 28 H 1.09001 * 110.03180 * 336.99738 * 11 9 7 29 29 H 1.09002 * 110.02924 * 98.38271 * 11 9 7 30 30 H 1.08996 * 110.03621 * 240.71551 * 12 11 9 31 31 H 1.09002 * 110.03285 * 119.28132 * 12 11 9 32 32 H 1.00902 * 110.99326 * 326.26818 * 15 13 12 33 33 H 1.09000 * 109.61946 * 294.38478 * 18 16 15 34 34 H 1.08995 * 109.61905 * 54.75134 * 18 16 15 35 35 H 1.08998 * 110.06436 * 165.84056 * 19 18 16 36 36 H 1.09003 * 107.88649 * 46.09401 * 19 18 16 37 37 H 1.09002 * 109.26936 * 293.28345 * 20 19 18 38 38 H 1.08996 * 109.26712 * 173.78145 * 20 19 18 39 39 H 1.08994 * 117.53852 * 357.56009 * 23 21 20 40 40 H 1.09001 * 117.53429 * 142.80921 * 23 21 20 41 41 H 1.08992 * 110.76187 * 38.30331 * 26 9 7 42 42 H 1.09004 * 110.75243 * 274.92792 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 1 0.5838 -2.5547 -0.8618 11 6 0.4562 -2.6648 1.3101 12 6 0.5407 -4.1534 1.6902 13 6 1.3846 -4.8403 0.5967 14 1 0.7408 -5.2756 -0.1676 15 7 2.2497 -5.8708 1.1862 16 6 1.5721 -7.1739 1.2149 17 1 0.5095 -7.0243 1.4055 18 6 1.7522 -7.8652 -0.1368 19 6 1.1812 -9.2598 -0.0587 20 6 2.1049 -10.1535 0.7691 21 6 2.3792 -9.5238 2.1259 22 1 3.2115 -9.9669 2.6726 23 6 1.2203 -9.0166 2.9741 24 6 2.1703 -8.0312 2.3280 25 1 2.8738 -7.5124 2.9793 26 6 2.2367 -3.6940 -0.0015 27 1 -0.4850 0.8400 0.0004 28 1 0.9001 -2.0530 2.0954 29 1 -0.5836 -2.3767 1.1554 30 1 -0.4582 -4.5885 1.7200 31 1 1.0257 -4.2641 2.6601 32 1 2.5551 -5.6016 2.1094 33 1 1.2343 -7.2976 -0.9100 34 1 2.8134 -7.9276 -0.3774 35 1 1.0709 -9.6754 -1.0603 36 1 0.2056 -9.1957 0.4233 37 1 3.0471 -10.2873 0.2375 38 1 1.6318 -11.1249 0.9125 39 1 0.2179 -9.0883 2.5522 40 1 1.2882 -9.1532 4.0534 41 1 3.0990 -3.4834 0.6310 42 1 2.5508 -3.9358 -1.0169 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597136688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:55 Heat of formation + Delta-G solvation = -4.897904 kcal Electronic energy + Delta-G solvation = -18597.705298 eV Core-core repulsion = 15962.615995 eV Total energy + Delta-G solvation = -2635.089304 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.97956 -37.52457 -34.19107 -33.07813 -31.98379 -28.95641 -27.94857 -26.29483 -24.08703 -23.17106 -22.45042 -21.14118 -19.41513 -18.98802 -18.37970 -16.52064 -16.21755 -15.19832 -14.72493 -14.43550 -14.29537 -14.12618 -13.72029 -13.23139 -12.71749 -12.57301 -12.30410 -12.17633 -11.55999 -11.53723 -11.24072 -11.06788 -10.97378 -10.93008 -10.63491 -10.44973 -10.27205 -10.13964 -9.91293 -9.77256 -9.71318 -9.49015 -9.02991 -8.66522 -8.32873 -7.87925 -5.95336 -3.97216 3.33022 3.41074 3.45509 3.68346 4.33047 4.49552 4.54029 4.67471 4.95927 5.04159 5.14625 5.22507 5.33990 5.36607 5.43771 5.57094 5.64097 5.65474 5.68046 5.77107 5.90748 5.93479 5.99513 6.03917 6.12291 6.19526 6.29007 6.34471 6.45275 6.56079 6.74268 6.80760 6.91872 7.10679 7.22959 7.40723 7.61753 7.76870 7.81582 7.97059 8.09410 8.54639 9.06746 9.66586 11.14668 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.051236 B = 0.004169 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.355848 B = 6714.386464 C = 6790.511987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.046 3.954 10 H 0.029 0.971 11 C -0.094 4.094 12 C -0.151 4.151 13 C 0.081 3.919 14 H 0.070 0.930 15 N -0.678 5.678 16 C 0.119 3.881 17 H 0.043 0.957 18 C -0.108 4.108 19 C -0.122 4.122 20 C -0.085 4.085 21 C -0.139 4.139 22 H 0.097 0.903 23 C -0.184 4.184 24 C -0.142 4.142 25 H 0.104 0.896 26 C -0.099 4.099 27 H 0.258 0.742 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.338 0.662 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.903 -18.346 3.649 18.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.547 4.547 8 H 0.074 0.926 9 C 0.027 3.973 10 H 0.047 0.953 11 C -0.133 4.133 12 C -0.190 4.190 13 C -0.028 4.028 14 H 0.088 0.912 15 N -0.309 5.309 16 C 0.009 3.991 17 H 0.061 0.939 18 C -0.146 4.146 19 C -0.160 4.160 20 C -0.123 4.123 21 C -0.158 4.158 22 H 0.115 0.885 23 C -0.221 4.221 24 C -0.161 4.161 25 H 0.122 0.878 26 C -0.137 4.137 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.157 0.843 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.085 -18.351 3.069 18.722 hybrid contribution -0.326 1.165 0.937 1.530 sum 1.759 -17.186 4.006 17.734 Atomic orbital electron populations 1.69983 1.05888 1.26190 1.50984 1.24993 0.94810 0.98989 0.95284 0.86612 0.80259 0.84113 0.77465 1.19772 1.21126 1.21174 1.21222 0.92866 0.90519 1.50140 0.92589 1.19465 0.92592 0.91827 0.93402 0.95326 1.22033 1.00785 0.90517 0.99976 1.22931 0.98564 0.99833 0.97703 1.22579 0.93245 0.91301 0.95705 0.91185 1.60758 1.40815 1.01540 1.27748 1.20996 0.95422 0.89204 0.93474 0.93928 1.21134 1.02144 0.94508 0.96785 1.21180 0.99070 0.95918 0.99851 1.20811 0.99886 0.98028 0.93537 1.21781 1.00141 0.96004 0.97847 0.88503 1.22796 0.95555 1.05019 0.98734 1.22051 1.02134 0.91389 1.00496 0.87793 1.22518 0.98453 0.94145 0.98579 0.93263 0.93187 0.93020 0.93971 0.93442 0.84314 0.91907 0.91081 0.91653 0.92416 0.91454 0.91852 0.88870 0.89167 0.92339 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 12.63 55.43 0.70 -25.34 16 2 C 0.06 1.70 5.35 -17.82 -0.10 1.60 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.18 8.36 -34.44 -0.29 -14.47 16 8 H 0.06 1.55 7.77 -52.49 -0.41 1.14 16 9 C 0.05 1.16 2.73 -90.11 -0.25 0.91 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.09 -2.23 5.60 -25.61 -0.14 -2.37 16 12 C -0.15 -2.86 6.49 -25.62 -0.17 -3.02 16 13 C 0.08 1.46 2.93 -66.08 -0.19 1.27 16 14 H 0.07 1.27 7.20 -51.93 -0.37 0.90 16 15 N -0.68 -10.44 6.16 -98.25 -0.60 -11.05 16 16 C 0.12 1.57 2.26 -67.92 -0.15 1.42 16 17 H 0.04 0.61 7.73 -51.93 -0.40 0.21 16 18 C -0.11 -1.34 5.27 -27.85 -0.15 -1.49 16 19 C -0.12 -1.24 5.61 -27.85 -0.16 -1.40 16 20 C -0.09 -0.79 5.98 -27.27 -0.16 -0.95 16 21 C -0.14 -1.38 6.09 -91.92 -0.56 -1.94 16 22 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 23 C -0.18 -1.84 9.51 -27.92 -0.27 -2.11 16 24 C -0.14 -1.62 5.64 -92.07 -0.52 -2.14 16 25 H 0.10 1.19 7.64 -51.93 -0.40 0.79 16 26 C -0.10 -2.09 5.96 -24.76 -0.15 -2.24 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.05 1.25 7.83 -51.93 -0.41 0.84 16 29 H 0.05 1.30 8.06 -51.93 -0.42 0.88 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.84 7.52 -51.93 -0.39 0.45 16 32 H 0.34 5.04 7.38 -39.29 -0.29 4.75 16 33 H 0.06 0.84 7.52 -51.93 -0.39 0.45 16 34 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.59 7.05 -51.93 -0.37 0.23 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.95 7.24 -51.93 -0.38 0.57 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.26 8.05 -51.93 -0.42 0.85 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 319.89 15.07 4.82 4.82 Total: -1.00 -28.19 319.89 -10.92 -39.11 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.57 Total: 2.83 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -3.24 Total: -26.93 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.10 Total: -36.39 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.19 -10.92 -39.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597136688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.213 kcal (2) G-P(sol) polarization free energy of solvation -28.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds