Wall clock time and date at job start Mon Mar 30 2020 06:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99820 * 2 1 4 4 H 1.48508 * 109.47150 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47271 * 299.99838 * 3 2 1 6 6 H 1.48501 * 109.47334 * 59.99936 * 3 2 1 7 7 C 1.37880 * 120.00449 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00299 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99569 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.53911 * 57.38731 * 9 7 2 11 11 C 1.54273 * 110.48449 * 294.77423 * 9 7 2 12 12 C 1.53869 * 106.59766 * 217.71178 * 11 9 7 13 13 C 1.54265 * 106.60001 * 0.02562 * 12 11 9 14 14 H 1.09005 * 110.59888 * 264.87381 * 13 12 11 15 15 N 1.46899 * 110.49106 * 142.28859 * 13 12 11 16 16 C 1.46901 * 111.00383 * 90.21962 * 15 13 12 17 17 H 1.08991 * 109.35200 * 324.72681 * 16 15 13 18 18 C 1.52881 * 109.23868 * 84.37905 * 16 15 13 19 19 C 1.50901 * 109.12103 * 174.14901 * 18 16 15 20 20 C 1.52872 * 109.85963 * 286.64189 * 19 18 16 21 21 C 1.52077 * 110.48674 * 53.53632 * 20 19 18 22 22 H 1.08999 * 114.63769 * 194.39085 * 21 20 19 23 23 C 1.52301 * 119.83867 * 49.56533 * 21 20 19 24 24 C 1.51361 * 60.10133 * 250.58546 * 23 21 20 25 25 H 1.09006 * 117.38120 * 252.66019 * 24 23 21 26 26 C 1.54887 * 110.48230 * 180.02562 * 9 7 2 27 27 H 0.96999 * 120.00219 * 359.97438 * 1 2 3 28 28 H 1.09001 * 110.03180 * 336.99738 * 11 9 7 29 29 H 1.09002 * 110.02924 * 98.38271 * 11 9 7 30 30 H 1.08996 * 110.03621 * 240.71551 * 12 11 9 31 31 H 1.09002 * 110.03285 * 119.28132 * 12 11 9 32 32 H 1.00902 * 110.99326 * 326.26818 * 15 13 12 33 33 H 1.09000 * 109.61946 * 294.38478 * 18 16 15 34 34 H 1.08995 * 109.61905 * 54.75134 * 18 16 15 35 35 H 1.08998 * 110.06436 * 165.84056 * 19 18 16 36 36 H 1.09003 * 107.88649 * 46.09401 * 19 18 16 37 37 H 1.09002 * 109.26936 * 293.28345 * 20 19 18 38 38 H 1.08996 * 109.26712 * 173.78145 * 20 19 18 39 39 H 1.08994 * 117.53852 * 357.56009 * 23 21 20 40 40 H 1.09001 * 117.53429 * 142.80921 * 23 21 20 41 41 H 1.08992 * 110.76187 * 38.30331 * 26 9 7 42 42 H 1.09004 * 110.75243 * 274.92792 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 1 0.5838 -2.5547 -0.8618 11 6 0.4562 -2.6648 1.3101 12 6 0.5407 -4.1534 1.6902 13 6 1.3846 -4.8403 0.5967 14 1 0.7408 -5.2756 -0.1676 15 7 2.2497 -5.8708 1.1862 16 6 1.5721 -7.1739 1.2149 17 1 0.5095 -7.0243 1.4055 18 6 1.7522 -7.8652 -0.1368 19 6 1.1812 -9.2598 -0.0587 20 6 2.1049 -10.1535 0.7691 21 6 2.3792 -9.5238 2.1259 22 1 3.2115 -9.9669 2.6726 23 6 1.2203 -9.0166 2.9741 24 6 2.1703 -8.0312 2.3280 25 1 2.8738 -7.5124 2.9793 26 6 2.2367 -3.6940 -0.0015 27 1 -0.4850 0.8400 0.0004 28 1 0.9001 -2.0530 2.0954 29 1 -0.5836 -2.3767 1.1554 30 1 -0.4582 -4.5885 1.7200 31 1 1.0257 -4.2641 2.6601 32 1 2.5551 -5.6016 2.1094 33 1 1.2343 -7.2976 -0.9100 34 1 2.8134 -7.9276 -0.3774 35 1 1.0709 -9.6754 -1.0603 36 1 0.2056 -9.1957 0.4233 37 1 3.0471 -10.2873 0.2375 38 1 1.6318 -11.1249 0.9125 39 1 0.2179 -9.0883 2.5522 40 1 1.2882 -9.1532 4.0534 41 1 3.0990 -3.4834 0.6310 42 1 2.5508 -3.9358 -1.0169 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597136688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:55 Heat of formation + Delta-G solvation = -19.518109 kcal Electronic energy + Delta-G solvation = -18598.339278 eV Core-core repulsion = 15962.615995 eV Total energy + Delta-G solvation = -2635.723283 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.91422 -39.10283 -35.69554 -34.17048 -33.67013 -30.28101 -29.69252 -27.83645 -25.72033 -24.38593 -23.46035 -22.04522 -20.96148 -20.86144 -19.27685 -18.31492 -17.51200 -16.59923 -16.42999 -15.88329 -15.59507 -15.13460 -14.77386 -14.53468 -14.14068 -13.93774 -13.78203 -13.44165 -13.18509 -12.99595 -12.73173 -12.45506 -12.32759 -12.29803 -12.09828 -11.81154 -11.72729 -11.59222 -11.37871 -11.12597 -10.99141 -10.80564 -10.75456 -10.50813 -10.47669 -9.18447 -8.11762 -6.21138 1.39675 1.41321 1.53282 2.43848 2.88508 3.17552 3.21676 3.66895 3.86165 3.99942 4.06481 4.15635 4.17688 4.25111 4.30592 4.39721 4.48680 4.52168 4.67526 4.72551 4.85082 4.89735 4.93947 5.02128 5.04163 5.10670 5.15412 5.17360 5.22537 5.25229 5.33932 5.36528 5.42932 5.44325 5.47506 5.54256 5.66057 5.92162 5.98957 6.26944 6.42459 6.58960 6.90788 7.46368 8.97778 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.051236 B = 0.004169 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.355848 B = 6714.386464 C = 6790.511987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.529 4.529 8 H 0.053 0.947 9 C 0.036 3.964 10 H -0.003 1.003 11 C -0.085 4.085 12 C -0.139 4.139 13 C 0.098 3.902 14 H 0.070 0.930 15 N -0.677 5.677 16 C 0.121 3.879 17 H 0.035 0.965 18 C -0.107 4.107 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.133 4.133 22 H 0.109 0.891 23 C -0.177 4.177 24 C -0.158 4.158 25 H 0.104 0.896 26 C -0.090 4.090 27 H 0.259 0.741 28 H 0.028 0.972 29 H 0.025 0.975 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.342 0.658 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.054 0.946 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.723 -19.996 4.420 20.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.567 4.567 8 H 0.071 0.929 9 C 0.017 3.983 10 H 0.015 0.985 11 C -0.124 4.124 12 C -0.178 4.178 13 C -0.012 4.012 14 H 0.088 0.912 15 N -0.308 5.308 16 C 0.011 3.989 17 H 0.053 0.947 18 C -0.145 4.145 19 C -0.157 4.157 20 C -0.122 4.122 21 C -0.151 4.151 22 H 0.127 0.873 23 C -0.214 4.214 24 C -0.177 4.177 25 H 0.122 0.878 26 C -0.128 4.128 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.162 0.838 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.073 0.927 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.915 -20.020 3.844 20.593 hybrid contribution -0.588 1.672 0.669 1.895 sum 2.327 -18.348 4.513 19.037 Atomic orbital electron populations 1.70107 1.07306 1.27068 1.51726 1.25786 0.95655 1.02490 0.94921 0.85575 0.79189 0.79759 0.77572 1.19018 1.20640 1.20638 1.21580 0.92967 0.92041 1.50130 0.92907 1.19457 0.93100 0.92808 0.92889 0.98525 1.21815 0.98519 0.93572 0.98502 1.22814 0.99887 0.96320 0.98768 1.22257 0.92572 0.91013 0.95353 0.91167 1.60680 1.40290 1.01729 1.28066 1.21021 0.94857 0.88265 0.94731 0.94727 1.21120 1.01598 0.95850 0.95912 1.21159 0.99065 0.94615 1.00826 1.20845 1.00001 0.98410 0.92972 1.21908 1.00396 0.94508 0.98273 0.87309 1.22838 0.95386 1.03751 0.99466 1.21972 1.03243 0.92125 1.00335 0.87820 1.22344 0.97708 0.93852 0.98882 0.93181 0.95278 0.95574 0.92595 0.91696 0.83789 0.93349 0.91845 0.90579 0.92479 0.91010 0.90181 0.89000 0.88014 0.92688 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.18 12.63 21.45 0.27 -54.91 16 2 C 0.01 0.56 5.35 84.66 0.45 1.01 16 3 Si 0.95 44.69 29.54 68.60 2.03 46.71 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.53 -30.11 8.36 25.60 0.21 -29.90 16 8 H 0.05 2.96 7.77 -2.91 -0.02 2.94 16 9 C 0.04 1.89 2.73 -10.46 -0.03 1.86 16 10 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 11 C -0.09 -4.12 5.60 31.32 0.18 -3.95 16 12 C -0.14 -5.15 6.49 31.32 0.20 -4.94 16 13 C 0.10 3.48 2.93 45.98 0.13 3.62 16 14 H 0.07 2.51 7.20 -2.38 -0.02 2.50 16 15 N -0.68 -19.94 6.16 -464.76 -2.86 -22.80 16 16 C 0.12 3.00 2.26 44.78 0.10 3.10 16 17 H 0.03 0.93 7.73 -2.39 -0.02 0.91 16 18 C -0.11 -2.52 5.27 29.87 0.16 -2.36 16 19 C -0.12 -2.16 5.61 29.87 0.17 -1.99 16 20 C -0.09 -1.32 5.98 30.25 0.18 -1.14 16 21 C -0.13 -2.24 6.09 -11.64 -0.07 -2.31 16 22 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 23 C -0.18 -3.08 9.51 29.83 0.28 -2.79 16 24 C -0.16 -3.26 5.64 -11.73 -0.07 -3.33 16 25 H 0.10 2.15 7.64 -2.38 -0.02 2.13 16 26 C -0.09 -3.83 5.96 31.87 0.19 -3.64 16 27 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.03 1.48 7.83 -2.39 -0.02 1.46 16 29 H 0.03 1.35 8.06 -2.39 -0.02 1.33 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 2.19 7.52 -2.39 -0.02 2.18 16 32 H 0.34 9.62 7.38 -89.69 -0.66 8.96 16 33 H 0.05 1.26 7.52 -2.39 -0.02 1.24 16 34 H 0.06 1.59 8.05 -2.39 -0.02 1.57 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.05 7.05 -2.39 -0.02 1.03 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.63 7.24 -2.39 -0.02 1.61 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 2.37 8.05 -2.39 -0.02 2.35 16 42 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -61.09 319.89 1.84 -59.25 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.31 Total: 18.50 kcal Atomic # 6 Polarization: -48.85 SS G_CDS: 2.10 Total: -46.75 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -2.59 Total: -77.71 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -61.09 1.84 -59.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597136688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.734 kcal (2) G-P(sol) polarization free energy of solvation -61.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds