Wall clock time and date at job start Mon Mar 30 2020 06:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.09004 * 110.43621 * 59.01849 * 9 7 2 11 11 C 1.54271 * 110.48404 * 296.47874 * 9 7 2 12 12 C 1.53878 * 106.59595 * 217.71190 * 11 9 7 13 13 C 1.54270 * 106.59857 * 359.97438 * 12 11 9 14 14 H 1.08992 * 110.48488 * 264.79942 * 13 12 11 15 15 N 1.46902 * 110.48521 * 142.28786 * 13 12 11 16 16 C 1.46897 * 111.00018 * 86.45345 * 15 13 12 17 17 H 1.09002 * 109.26614 * 34.50070 * 16 15 13 18 18 C 1.52873 * 109.26834 * 275.00361 * 16 15 13 19 19 C 1.53302 * 108.59201 * 184.84396 * 18 16 15 20 20 C 1.52875 * 108.58238 * 74.43900 * 19 18 16 21 21 C 1.52713 * 110.15574 * 305.48273 * 20 19 18 22 22 H 1.08997 * 115.39201 * 232.83166 * 21 20 19 23 23 C 1.53647 * 116.03347 * 90.19911 * 21 20 19 24 24 C 1.52072 * 109.26866 * 153.97137 * 16 15 13 25 25 H 1.08994 * 114.63800 * 287.11485 * 24 16 15 26 26 C 1.54883 * 110.48577 * 181.55883 * 9 7 2 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.08999 * 110.03165 * 336.99307 * 11 9 7 29 29 H 1.08995 * 110.03198 * 98.42676 * 11 9 7 30 30 H 1.08997 * 110.02806 * 119.28106 * 12 11 9 31 31 H 1.08996 * 110.03364 * 240.66634 * 12 11 9 32 32 H 1.00897 * 111.00003 * 210.41211 * 15 13 12 33 33 H 1.09007 * 109.61739 * 304.57179 * 18 16 15 34 34 H 1.08999 * 109.62080 * 65.10649 * 18 16 15 35 35 H 1.08998 * 109.61991 * 194.16844 * 19 18 16 36 36 H 1.09004 * 109.61382 * 314.71178 * 19 18 16 37 37 H 1.08997 * 109.36122 * 65.68920 * 20 19 18 38 38 H 1.09002 * 109.36065 * 185.27638 * 20 19 18 39 39 H 1.09005 * 117.53368 * 355.69211 * 23 21 20 40 40 H 1.08998 * 117.54072 * 140.86388 * 23 21 20 41 41 H 1.08994 * 110.76169 * 274.93894 * 26 9 7 42 42 H 1.09000 * 110.75607 * 38.30743 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8885 -0.6708 0.8846 11 6 4.0568 -0.5461 -1.2837 12 6 5.3052 -1.3508 -1.6861 13 6 5.4753 -2.4593 -0.6267 14 1 6.1730 -2.1424 0.1483 15 7 5.9373 -3.7042 -1.2550 16 6 7.4021 -3.7277 -1.3622 17 1 7.8341 -3.2208 -0.4993 18 6 7.8263 -3.0009 -2.6385 19 6 9.3447 -3.1392 -2.7981 20 6 9.6590 -4.5653 -3.2504 21 6 9.0420 -5.5725 -2.2824 22 1 9.7290 -6.3188 -1.8837 23 6 7.6148 -6.0367 -2.6114 24 6 7.8805 -5.1710 -1.3867 25 1 7.8167 -5.6872 -0.4289 26 6 4.0538 -2.6443 -0.0356 27 1 -0.4849 0.8400 0.0004 28 1 3.3078 -0.5991 -2.0737 29 1 4.3273 0.4926 -1.0940 30 1 5.1618 -1.7942 -2.6714 31 1 6.1813 -0.7024 -1.6925 32 1 5.5985 -4.5105 -0.7518 33 1 7.3258 -3.4478 -3.4976 34 1 7.5606 -1.9464 -2.5647 35 1 9.7000 -2.4311 -3.5467 36 1 9.8324 -2.9422 -1.8434 37 1 9.2506 -4.7263 -4.2481 38 1 10.7396 -4.7058 -3.2777 39 1 7.1159 -5.5692 -3.4604 40 1 7.3755 -7.0870 -2.4451 41 1 4.1026 -3.0673 0.9677 42 1 3.4425 -3.2668 -0.6890 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597136689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:57 Heat of formation + Delta-G solvation = 2.561934 kcal Electronic energy + Delta-G solvation = -18776.611764 eV Core-core repulsion = 16141.845943 eV Total energy + Delta-G solvation = -2634.765821 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90173 -37.63993 -34.21098 -32.96598 -32.08250 -29.22466 -28.38430 -26.48544 -24.12820 -23.21619 -22.50873 -20.87209 -19.66467 -19.10733 -18.32741 -16.55460 -16.47545 -15.30686 -15.06050 -14.91706 -14.26148 -14.01430 -13.51012 -13.26498 -12.94956 -12.84404 -12.47738 -12.29660 -11.91604 -11.54165 -11.34038 -11.08116 -10.99231 -10.82803 -10.51124 -10.34539 -10.31887 -10.10716 -9.98531 -9.82133 -9.70809 -9.61404 -9.27671 -8.90232 -8.49203 -8.11483 -6.01632 -3.99552 3.33475 3.41402 3.43749 3.58596 4.37017 4.47612 4.49266 4.69595 4.87425 4.92855 5.10466 5.22951 5.26679 5.27529 5.39854 5.49352 5.52709 5.60929 5.63339 5.75692 5.78498 5.82765 5.99014 6.00522 6.08997 6.11901 6.20291 6.25782 6.40283 6.41253 6.48046 6.57717 6.71223 6.77244 6.91569 7.02745 7.22510 7.48186 7.64109 7.72783 7.86298 8.59937 9.02775 9.61946 11.11909 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.045402 B = 0.004789 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.564978 B = 5845.011353 C = 6221.732007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.069 3.931 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.507 4.507 8 H 0.073 0.927 9 C 0.014 3.986 10 H 0.028 0.972 11 C -0.131 4.131 12 C -0.106 4.106 13 C 0.078 3.922 14 H 0.039 0.961 15 N -0.675 5.675 16 C 0.120 3.880 17 H 0.042 0.958 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.087 4.087 21 C -0.147 4.147 22 H 0.098 0.902 23 C -0.167 4.167 24 C -0.145 4.145 25 H 0.093 0.907 26 C -0.104 4.104 27 H 0.262 0.738 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.340 0.660 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.251 -8.599 -4.768 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.545 4.545 8 H 0.091 0.909 9 C -0.006 4.006 10 H 0.046 0.954 11 C -0.169 4.169 12 C -0.145 4.145 13 C -0.031 4.031 14 H 0.057 0.943 15 N -0.306 5.306 16 C 0.011 3.989 17 H 0.060 0.940 18 C -0.150 4.150 19 C -0.158 4.158 20 C -0.125 4.125 21 C -0.166 4.166 22 H 0.116 0.884 23 C -0.204 4.204 24 C -0.164 4.164 25 H 0.111 0.889 26 C -0.142 4.142 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.158 0.842 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.984 -8.254 -5.402 21.394 hybrid contribution 0.607 0.777 0.986 1.395 sum 19.591 -7.477 -4.416 21.429 Atomic orbital electron populations 1.69911 1.06290 1.26787 1.51362 1.24998 0.94615 0.98976 0.94570 0.86902 0.80005 0.83768 0.78423 1.20352 1.22194 1.19072 1.21054 0.88791 0.94341 1.50280 0.90914 1.19887 0.96468 0.91355 0.92851 0.95410 1.22619 0.96039 0.97271 1.00991 1.22190 0.97403 0.95842 0.99030 1.22608 0.96680 0.89528 0.94273 0.94347 1.60618 1.08224 1.04761 1.56975 1.20817 0.88399 0.92396 0.97313 0.93976 1.21701 0.94317 1.00915 0.98074 1.21603 0.96817 0.96172 1.01234 1.21031 0.99802 0.93868 0.97790 1.22190 0.91022 1.01565 1.01784 0.88401 1.23036 0.98200 0.99182 0.99950 1.21943 1.02494 0.96402 0.95528 0.88866 1.22585 0.93100 0.99824 0.98695 0.92801 0.91435 0.94366 0.91409 0.93919 0.84169 0.91161 0.91360 0.91929 0.92050 0.91673 0.91991 0.88174 0.89333 0.93305 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.93 16 3 Si 0.88 22.15 24.78 -169.99 -4.21 17.93 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.27 -6.42 6.38 56.52 0.36 -6.06 16 7 C -0.51 -14.36 8.96 -34.44 -0.31 -14.67 16 8 H 0.07 2.23 8.02 -52.49 -0.42 1.81 16 9 C 0.01 0.32 2.28 -90.11 -0.21 0.12 16 10 H 0.03 0.68 7.18 -51.93 -0.37 0.30 16 11 C -0.13 -2.85 4.77 -25.61 -0.12 -2.97 16 12 C -0.11 -1.90 4.99 -25.61 -0.13 -2.03 16 13 C 0.08 1.32 3.17 -65.96 -0.21 1.11 16 14 H 0.04 0.64 7.50 -51.93 -0.39 0.25 16 15 N -0.68 -9.70 6.13 -98.48 -0.60 -10.30 16 16 C 0.12 1.49 2.55 -68.25 -0.17 1.32 16 17 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 18 C -0.11 -1.33 4.87 -26.64 -0.13 -1.46 16 19 C -0.12 -1.18 5.93 -26.64 -0.16 -1.34 16 20 C -0.09 -0.78 5.83 -26.94 -0.16 -0.94 16 21 C -0.15 -1.38 6.19 -90.90 -0.56 -1.94 16 22 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 23 C -0.17 -1.68 9.66 -26.75 -0.26 -1.94 16 24 C -0.15 -1.55 5.23 -91.92 -0.48 -2.03 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 C -0.10 -2.06 5.71 -24.65 -0.14 -2.20 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.07 1.57 7.83 -51.93 -0.41 1.17 16 29 H 0.04 0.83 5.88 -51.93 -0.31 0.52 16 30 H 0.07 1.20 8.04 -51.93 -0.42 0.79 16 31 H 0.04 0.70 7.37 -51.93 -0.38 0.32 16 32 H 0.34 4.67 8.07 -39.29 -0.32 4.35 16 33 H 0.07 0.89 7.11 -51.92 -0.37 0.52 16 34 H 0.07 0.89 6.11 -51.93 -0.32 0.57 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.61 8.04 -51.93 -0.42 0.19 16 37 H 0.06 0.58 8.06 -51.93 -0.42 0.16 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 1.11 7.26 -51.93 -0.38 0.73 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.50 8.05 -51.93 -0.42 1.08 16 LS Contribution 310.19 15.07 4.67 4.67 Total: -1.00 -29.38 310.19 -9.93 -39.30 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.43 Total: 2.72 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: -3.13 Total: -27.05 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.17 Total: -37.58 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.21 Total: 17.93 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.38 -9.93 -39.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597136689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.867 kcal (2) G-P(sol) polarization free energy of solvation -29.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds