Wall clock time and date at job start Mon Mar 30 2020 06:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.09004 * 110.43621 * 59.01849 * 9 7 2 11 11 C 1.54271 * 110.48404 * 296.47874 * 9 7 2 12 12 C 1.53878 * 106.59595 * 217.71190 * 11 9 7 13 13 C 1.54270 * 106.59857 * 359.97438 * 12 11 9 14 14 H 1.08992 * 110.48488 * 264.79942 * 13 12 11 15 15 N 1.46902 * 110.48521 * 142.28786 * 13 12 11 16 16 C 1.46897 * 111.00018 * 86.45345 * 15 13 12 17 17 H 1.09002 * 109.26614 * 34.50070 * 16 15 13 18 18 C 1.52873 * 109.26834 * 275.00361 * 16 15 13 19 19 C 1.53302 * 108.59201 * 184.84396 * 18 16 15 20 20 C 1.52875 * 108.58238 * 74.43900 * 19 18 16 21 21 C 1.52713 * 110.15574 * 305.48273 * 20 19 18 22 22 H 1.08997 * 115.39201 * 232.83166 * 21 20 19 23 23 C 1.53647 * 116.03347 * 90.19911 * 21 20 19 24 24 C 1.52072 * 109.26866 * 153.97137 * 16 15 13 25 25 H 1.08994 * 114.63800 * 287.11485 * 24 16 15 26 26 C 1.54883 * 110.48577 * 181.55883 * 9 7 2 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.08999 * 110.03165 * 336.99307 * 11 9 7 29 29 H 1.08995 * 110.03198 * 98.42676 * 11 9 7 30 30 H 1.08997 * 110.02806 * 119.28106 * 12 11 9 31 31 H 1.08996 * 110.03364 * 240.66634 * 12 11 9 32 32 H 1.00897 * 111.00003 * 210.41211 * 15 13 12 33 33 H 1.09007 * 109.61739 * 304.57179 * 18 16 15 34 34 H 1.08999 * 109.62080 * 65.10649 * 18 16 15 35 35 H 1.08998 * 109.61991 * 194.16844 * 19 18 16 36 36 H 1.09004 * 109.61382 * 314.71178 * 19 18 16 37 37 H 1.08997 * 109.36122 * 65.68920 * 20 19 18 38 38 H 1.09002 * 109.36065 * 185.27638 * 20 19 18 39 39 H 1.09005 * 117.53368 * 355.69211 * 23 21 20 40 40 H 1.08998 * 117.54072 * 140.86388 * 23 21 20 41 41 H 1.08994 * 110.76169 * 274.93894 * 26 9 7 42 42 H 1.09000 * 110.75607 * 38.30743 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8885 -0.6708 0.8846 11 6 4.0568 -0.5461 -1.2837 12 6 5.3052 -1.3508 -1.6861 13 6 5.4753 -2.4593 -0.6267 14 1 6.1730 -2.1424 0.1483 15 7 5.9373 -3.7042 -1.2550 16 6 7.4021 -3.7277 -1.3622 17 1 7.8341 -3.2208 -0.4993 18 6 7.8263 -3.0009 -2.6385 19 6 9.3447 -3.1392 -2.7981 20 6 9.6590 -4.5653 -3.2504 21 6 9.0420 -5.5725 -2.2824 22 1 9.7290 -6.3188 -1.8837 23 6 7.6148 -6.0367 -2.6114 24 6 7.8805 -5.1710 -1.3867 25 1 7.8167 -5.6872 -0.4289 26 6 4.0538 -2.6443 -0.0356 27 1 -0.4849 0.8400 0.0004 28 1 3.3078 -0.5991 -2.0737 29 1 4.3273 0.4926 -1.0940 30 1 5.1618 -1.7942 -2.6714 31 1 6.1813 -0.7024 -1.6925 32 1 5.5985 -4.5105 -0.7518 33 1 7.3258 -3.4478 -3.4976 34 1 7.5606 -1.9464 -2.5647 35 1 9.7000 -2.4311 -3.5467 36 1 9.8324 -2.9422 -1.8434 37 1 9.2506 -4.7263 -4.2481 38 1 10.7396 -4.7058 -3.2777 39 1 7.1159 -5.5692 -3.4604 40 1 7.3755 -7.0870 -2.4451 41 1 4.1026 -3.0673 0.9677 42 1 3.4425 -3.2668 -0.6890 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597136689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:57 Heat of formation + Delta-G solvation = -14.758623 kcal Electronic energy + Delta-G solvation = -18777.362839 eV Core-core repulsion = 16141.845943 eV Total energy + Delta-G solvation = -2635.516897 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.80910 -39.11113 -35.63460 -34.13059 -33.72973 -30.48389 -30.06234 -27.87962 -25.59353 -24.50011 -23.42106 -21.72368 -21.17006 -20.84331 -19.26133 -18.60032 -17.31785 -16.77052 -16.66851 -16.10701 -15.57764 -15.14873 -14.83079 -14.44473 -14.37602 -14.16450 -14.02841 -13.46855 -13.18239 -13.01650 -12.76504 -12.26427 -12.16312 -12.06800 -11.99662 -11.77815 -11.65327 -11.55483 -11.43039 -11.16301 -11.07752 -10.94025 -10.76624 -10.69340 -10.53984 -9.27515 -8.28254 -6.30893 1.33390 1.35349 1.46070 2.35189 2.75269 3.07221 3.35856 3.68086 3.85598 3.89616 4.02639 4.08335 4.14085 4.19270 4.31716 4.44235 4.49529 4.59440 4.64969 4.71396 4.77848 4.79058 4.85266 4.94702 5.00667 5.02568 5.10418 5.15166 5.17728 5.24640 5.28241 5.32375 5.40267 5.44199 5.46990 5.49070 5.57559 5.65829 5.81890 6.29437 6.35611 6.57924 6.75706 7.34329 8.89007 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.045402 B = 0.004789 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.564978 B = 5845.011353 C = 6221.732007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.011 3.989 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.245 1.245 7 C -0.513 4.513 8 H 0.030 0.970 9 C 0.007 3.993 10 H 0.028 0.972 11 C -0.129 4.129 12 C -0.097 4.097 13 C 0.094 3.906 14 H 0.049 0.951 15 N -0.678 5.678 16 C 0.121 3.879 17 H 0.040 0.960 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.088 4.088 21 C -0.135 4.135 22 H 0.113 0.887 23 C -0.170 4.170 24 C -0.155 4.155 25 H 0.098 0.902 26 C -0.099 4.099 27 H 0.264 0.736 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.344 0.656 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.601 -8.469 -5.053 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.221 1.221 6 H -0.169 1.169 7 C -0.551 4.551 8 H 0.049 0.951 9 C -0.013 4.013 10 H 0.046 0.954 11 C -0.168 4.168 12 C -0.135 4.135 13 C -0.016 4.016 14 H 0.067 0.933 15 N -0.309 5.309 16 C 0.012 3.988 17 H 0.058 0.942 18 C -0.149 4.149 19 C -0.154 4.154 20 C -0.126 4.126 21 C -0.154 4.154 22 H 0.131 0.869 23 C -0.207 4.207 24 C -0.173 4.173 25 H 0.116 0.884 26 C -0.137 4.137 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.163 0.837 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.075 0.925 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 22.359 -8.146 -5.691 24.468 hybrid contribution -0.511 0.633 1.073 1.347 sum 21.848 -7.514 -4.617 23.561 Atomic orbital electron populations 1.70064 1.08261 1.27909 1.53270 1.25884 0.95370 1.03031 0.94302 0.85879 0.79350 0.78761 0.79160 1.19159 1.22090 1.16875 1.21375 0.91561 0.92759 1.49398 0.95129 1.19883 0.93294 0.94249 0.93848 0.95429 1.22489 0.97174 0.98073 0.99021 1.22110 0.96238 0.95978 0.99175 1.22357 0.94783 0.90414 0.94048 0.93302 1.60579 1.09932 1.03821 1.56571 1.20848 0.86776 0.93743 0.97409 0.94210 1.21675 0.95910 0.99977 0.97352 1.21578 0.95056 0.97075 1.01706 1.21066 1.00871 0.93078 0.97544 1.22306 0.90730 1.01542 1.00829 0.86927 1.23031 0.99044 0.99456 0.99154 1.21902 1.03887 0.95423 0.96107 0.88373 1.22459 0.94846 0.97172 0.99236 0.92670 0.93785 0.93853 0.91398 0.91580 0.83726 0.92148 0.92389 0.90999 0.91853 0.91707 0.90275 0.89390 0.88464 0.92457 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 2 C 0.01 0.62 5.46 84.66 0.46 1.09 16 3 Si 0.94 45.56 24.78 68.60 1.70 47.26 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.25 -10.93 6.38 99.48 0.63 -10.30 16 7 C -0.51 -29.97 8.96 25.60 0.23 -29.74 16 8 H 0.03 1.98 8.02 -2.91 -0.02 1.95 16 9 C 0.01 0.31 2.28 -10.47 -0.02 0.28 16 10 H 0.03 1.30 7.18 -2.39 -0.02 1.29 16 11 C -0.13 -5.47 4.77 31.32 0.15 -5.32 16 12 C -0.10 -3.26 4.99 31.32 0.16 -3.10 16 13 C 0.09 2.97 3.17 46.05 0.15 3.12 16 14 H 0.05 1.49 7.50 -2.39 -0.02 1.47 16 15 N -0.68 -18.33 6.13 -465.47 -2.86 -21.18 16 16 C 0.12 2.73 2.55 44.57 0.11 2.85 16 17 H 0.04 0.94 7.45 -2.39 -0.02 0.92 16 18 C -0.11 -2.40 4.87 30.65 0.15 -2.25 16 19 C -0.12 -1.94 5.93 30.65 0.18 -1.76 16 20 C -0.09 -1.30 5.83 30.46 0.18 -1.13 16 21 C -0.14 -2.15 6.19 -10.98 -0.07 -2.21 16 22 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 23 C -0.17 -3.07 9.66 30.58 0.30 -2.78 16 24 C -0.15 -2.94 5.23 -11.63 -0.06 -3.00 16 25 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 26 C -0.10 -3.89 5.71 31.94 0.18 -3.70 16 27 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 28 H 0.04 2.04 7.83 -2.39 -0.02 2.02 16 29 H 0.04 1.77 5.88 -2.39 -0.01 1.75 16 30 H 0.07 2.29 8.04 -2.39 -0.02 2.27 16 31 H 0.07 1.94 7.37 -2.39 -0.02 1.93 16 32 H 0.34 8.93 8.07 -89.70 -0.72 8.21 16 33 H 0.06 1.42 7.11 -2.38 -0.02 1.40 16 34 H 0.06 1.36 6.11 -2.39 -0.01 1.34 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.05 8.04 -2.39 -0.02 1.03 16 37 H 0.06 0.98 8.06 -2.39 -0.02 0.96 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 1.82 7.26 -2.38 -0.02 1.81 16 40 H 0.10 1.57 8.14 -2.39 -0.02 1.56 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.05 2.34 8.05 -2.39 -0.02 2.32 16 Total: -1.00 -64.46 310.19 1.42 -63.04 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.19 Total: 19.33 kcal Atomic # 6 Polarization: -49.74 SS G_CDS: 2.09 Total: -47.65 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -2.56 Total: -81.97 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.70 Total: 47.26 kcal Total: -64.46 1.42 -63.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597136689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.282 kcal (2) G-P(sol) polarization free energy of solvation -64.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds