Wall clock time and date at job start Mon Mar 30 2020 06:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52012 * 112.28955 * 2 1 4 4 C 1.52519 * 111.39280 * 265.17887 * 3 2 1 5 5 C 1.53133 * 108.87405 * 302.59494 * 4 3 2 6 6 C 1.52595 * 108.76871 * 68.32723 * 5 4 3 7 7 C 1.51391 * 111.56652 * 303.22361 * 6 5 4 8 8 H 1.09003 * 112.29373 * 170.78826 * 7 6 5 9 9 C 1.53203 * 114.71328 * 300.26134 * 7 6 5 10 10 N 1.47620 * 87.25412 * 144.90231 * 9 7 6 11 11 C 1.46901 * 111.00063 * 220.98295 * 10 9 7 12 12 C 1.53001 * 109.46833 * 259.07147 * 11 10 9 13 13 C 1.50691 * 115.55219 * 34.41350 * 12 11 10 14 14 H 1.08002 * 120.00277 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00002 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00065 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00034 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47123 * 89.99807 * 17 15 13 19 19 H 1.48493 * 109.46970 * 210.00218 * 17 15 13 20 20 H 1.48503 * 109.47110 * 330.00057 * 17 15 13 21 21 C 1.53003 * 117.49554 * 248.74322 * 12 11 10 22 22 C 1.52999 * 117.49558 * 180.08934 * 12 11 10 23 23 H 1.09000 * 109.47558 * 311.31170 * 1 2 3 24 24 H 1.09007 * 109.47290 * 71.31269 * 1 2 3 25 25 H 1.08999 * 109.47393 * 191.31018 * 1 2 3 26 26 H 1.08992 * 109.09370 * 25.67532 * 3 2 1 27 27 H 1.09004 * 109.09285 * 144.68866 * 3 2 1 28 28 H 1.09004 * 109.57280 * 62.40885 * 4 3 2 29 29 H 1.08996 * 109.57229 * 182.77635 * 4 3 2 30 30 H 1.09003 * 109.59412 * 188.11178 * 5 4 3 31 31 H 1.08998 * 109.58645 * 308.54305 * 5 4 3 32 32 H 1.08994 * 109.06338 * 63.76323 * 6 5 4 33 33 H 1.09001 * 109.05685 * 182.68866 * 6 5 4 34 34 H 1.08998 * 113.58911 * 30.31173 * 9 7 6 35 35 H 1.09002 * 113.58449 * 259.49364 * 9 7 6 36 36 H 1.08999 * 109.47344 * 139.07013 * 11 10 9 37 37 H 1.08997 * 109.47206 * 19.06698 * 11 10 9 38 38 H 0.97000 * 119.99847 * 179.97438 * 16 15 13 39 39 H 1.09001 * 117.50228 * 0.02562 * 21 12 11 40 40 H 1.08995 * 117.49831 * 145.01833 * 21 12 11 41 41 H 1.09002 * 117.49341 * 214.97640 * 22 12 11 42 42 H 1.08995 * 117.50311 * 359.96938 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1065 1.4065 0.0000 4 6 2.4280 1.8760 -1.4151 5 6 3.4044 0.8856 -2.0558 6 6 2.6807 -0.4379 -2.2863 7 6 2.1028 -0.9876 -0.9995 8 1 1.4499 -1.8433 -1.1718 9 6 3.1339 -1.2624 0.0997 10 7 2.1047 -0.8428 1.0714 11 6 2.6906 -0.0156 2.1346 12 6 2.8981 -0.8681 3.3880 13 6 3.2701 -2.3073 3.1410 14 1 3.3737 -2.6725 2.1299 15 6 3.4784 -3.1581 4.2059 16 7 3.3528 -2.7134 5.4372 17 14 3.9403 -4.9421 3.8996 18 1 5.4185 -5.0660 3.8320 19 1 3.4230 -5.7845 5.0077 20 1 3.3464 -5.3938 2.6157 21 6 2.0185 -0.5642 4.6026 22 6 3.5010 -0.1833 4.6162 23 1 -0.3634 0.6784 0.7719 24 1 -0.3634 0.3293 -0.9735 25 1 -0.3634 -1.0077 0.2015 26 1 1.3828 2.0885 0.4463 27 1 3.0195 1.4176 0.5954 28 1 1.5112 1.9171 -2.0033 29 1 2.8839 2.8653 -1.3768 30 1 3.7539 1.2818 -3.0092 31 1 4.2531 0.7269 -1.3905 32 1 1.8729 -0.2821 -3.0013 33 1 3.3844 -1.1613 -2.6981 34 1 3.9969 -0.5976 0.0643 35 1 3.4113 -2.3131 0.1847 36 1 2.0180 0.8107 2.3644 37 1 3.6502 0.3791 1.8008 38 1 3.4989 -3.3121 6.1863 39 1 1.2918 0.2427 4.5085 40 1 1.7093 -1.4053 5.2230 41 1 4.1665 -0.7740 5.2458 42 1 3.7503 0.8743 4.5312 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602917602.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:18 Heat of formation + Delta-G solvation = 63.660070 kcal Electronic energy + Delta-G solvation = -19669.290530 eV Core-core repulsion = 17037.174123 eV Total energy + Delta-G solvation = -2632.116407 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.20787 -36.48017 -34.62668 -31.89063 -31.42234 -30.15394 -27.18605 -25.49955 -25.22651 -23.03214 -21.78872 -20.74211 -20.50130 -18.77283 -17.12606 -15.96371 -15.59331 -15.20779 -14.80820 -14.62938 -13.81040 -13.69295 -13.55818 -13.04719 -12.58045 -12.39206 -12.25125 -12.05631 -11.52610 -11.39132 -11.06736 -10.97383 -10.92734 -10.78314 -10.48295 -10.41217 -10.32636 -10.03647 -9.88443 -9.80040 -9.42911 -9.32486 -8.65289 -8.21225 -7.99651 -7.81164 -5.81897 -3.83778 3.34955 3.42074 3.45961 4.45698 4.50590 4.65348 4.79409 5.06931 5.15895 5.24362 5.29977 5.41515 5.43532 5.61452 5.75510 5.76589 5.83826 5.94638 5.99144 6.05433 6.07229 6.14266 6.18812 6.20968 6.25209 6.31794 6.39487 6.44238 6.52068 6.53677 6.61493 6.76219 6.90585 7.05501 7.17199 7.32617 7.47909 7.78548 7.97925 8.18448 8.34902 8.68620 9.12481 9.69337 11.14815 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.026802 B = 0.007274 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.453005 B = 3848.390907 C = 4339.924567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.052 3.948 3 C -0.129 4.129 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.104 4.104 7 C -0.108 4.108 8 H 0.093 0.907 9 C 0.009 3.991 10 N -0.431 5.431 11 C 0.069 3.931 12 C 0.029 3.971 13 C -0.449 4.449 14 H 0.067 0.933 15 C 0.051 3.949 16 N -0.886 5.886 17 Si 0.892 3.108 18 H -0.284 1.284 19 H -0.289 1.289 20 H -0.274 1.274 21 C -0.186 4.186 22 C -0.195 4.195 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.033 0.967 38 H 0.255 0.745 39 H 0.037 0.963 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.870 6.986 -13.440 15.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.039 4.039 3 C -0.168 4.168 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.142 4.142 7 C -0.126 4.126 8 H 0.111 0.889 9 C -0.120 4.120 10 N -0.151 5.151 11 C -0.059 4.059 12 C 0.028 3.972 13 C -0.487 4.487 14 H 0.085 0.915 15 C -0.149 4.149 16 N -0.525 5.525 17 Si 0.720 3.280 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.199 1.199 21 C -0.224 4.224 22 C -0.233 4.233 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.272 6.400 -12.837 14.523 hybrid contribution 0.746 -0.248 -0.107 0.794 sum -1.525 6.152 -12.944 14.412 Atomic orbital electron populations 1.21675 0.93872 1.02385 1.00236 1.22188 0.96003 0.92067 0.93640 1.21703 1.01827 0.95845 0.97412 1.21383 0.99239 0.98117 0.96244 1.21515 0.98458 0.95536 1.00305 1.20948 0.99506 0.96726 0.97058 1.22088 0.98767 0.98671 0.93115 0.88854 1.23856 0.94308 1.02232 0.91599 1.69361 1.18534 1.24726 1.02521 1.22180 0.95736 0.94534 0.93482 1.18882 0.99873 0.94128 0.84293 1.20640 1.43054 0.92212 0.92804 0.91498 1.25031 0.96035 0.98452 0.95332 1.70028 1.50135 1.34500 0.97881 0.86593 0.78328 0.85268 0.77787 1.21042 1.21476 1.19930 1.22810 0.91426 1.01077 1.07052 1.22850 0.97840 0.95683 1.06957 0.93239 0.93129 0.91745 0.91832 0.90737 0.92110 0.92324 0.92243 0.91814 0.92332 0.91921 0.91992 0.89963 0.93197 0.94927 0.93458 0.94467 0.87443 0.87297 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 9.13 37.16 0.34 -1.46 16 2 C 0.05 0.80 1.06 -136.83 -0.14 0.65 16 3 C -0.13 -1.80 3.87 -27.48 -0.11 -1.91 16 4 C -0.11 -1.27 5.92 -26.91 -0.16 -1.43 16 5 C -0.12 -1.34 5.69 -26.87 -0.15 -1.49 16 6 C -0.10 -1.21 5.63 -27.75 -0.16 -1.37 16 7 C -0.11 -1.55 3.71 -91.97 -0.34 -1.89 16 8 H 0.09 1.37 8.05 -51.93 -0.42 0.95 16 9 C 0.01 0.16 5.94 -7.98 -0.05 0.11 16 10 N -0.43 -8.44 5.38 -233.10 -1.25 -9.69 16 11 C 0.07 1.46 3.90 -3.82 -0.01 1.44 16 12 C 0.03 0.74 2.52 -155.66 -0.39 0.35 16 13 C -0.45 -12.36 8.65 -34.44 -0.30 -12.66 16 14 H 0.07 1.81 5.38 -52.49 -0.28 1.52 16 15 C 0.05 1.43 5.28 -17.82 -0.09 1.33 16 16 N -0.89 -25.38 8.59 55.43 0.48 -24.91 16 17 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.19 -4.84 9.31 -26.69 -0.25 -5.08 16 22 C -0.19 -5.00 9.38 -26.70 -0.25 -5.26 16 23 H 0.05 0.72 7.96 -51.93 -0.41 0.31 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.86 7.74 -51.93 -0.40 0.46 16 27 H 0.07 1.14 5.05 -51.93 -0.26 0.88 16 28 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.77 6.79 -51.93 -0.35 0.42 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 1.05 5.61 -51.93 -0.29 0.76 16 35 H 0.08 1.55 7.12 -51.93 -0.37 1.18 16 36 H 0.05 1.02 7.07 -51.93 -0.37 0.66 16 37 H 0.03 0.67 5.92 -51.93 -0.31 0.36 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 39 H 0.04 0.89 8.05 -51.93 -0.42 0.47 16 40 H 0.11 3.09 6.28 -51.93 -0.33 2.76 16 41 H 0.11 3.07 6.28 -51.93 -0.33 2.74 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -28.55 305.52 -10.31 -38.86 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.05 Total: 3.13 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: -2.07 Total: -28.66 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: -0.78 Total: -34.60 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.55 -10.31 -38.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602917602.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.525 kcal (2) G-P(sol) polarization free energy of solvation -28.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds