Wall clock time and date at job start Mon Mar 30 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99929 * 2 1 4 4 H 1.48505 * 109.46827 * 273.81921 * 3 2 1 5 5 H 1.48498 * 109.47187 * 33.81449 * 3 2 1 6 6 H 1.48496 * 109.47275 * 153.81929 * 3 2 1 7 7 C 1.37877 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00151 * 353.14191 * 7 2 1 9 9 C 1.50700 * 120.00036 * 173.13114 * 7 2 1 10 10 C 1.53008 * 115.54611 * 91.56399 * 9 7 2 11 11 N 1.46896 * 109.47098 * 54.62669 * 10 9 7 12 12 C 1.48125 * 111.00401 * 66.11846 * 11 10 9 13 13 C 1.52704 * 87.15879 * 141.43454 * 12 11 10 14 14 H 1.08997 * 113.98868 * 84.32546 * 13 12 11 15 15 C 1.52461 * 115.95329 * 219.99926 * 13 12 11 16 16 C 1.53672 * 108.69581 * 151.98727 * 15 13 12 17 17 C 1.52899 * 109.37381 * 299.81707 * 16 15 13 18 18 C 1.53280 * 110.70756 * 100.62057 * 17 16 15 19 19 C 1.52946 * 109.41854 * 277.35163 * 18 17 16 20 20 C 1.46514 * 111.00152 * 160.88836 * 11 10 9 21 21 H 1.09000 * 113.03763 * 332.64071 * 20 11 10 22 22 C 1.52999 * 117.50234 * 237.23050 * 9 7 2 23 23 C 1.53002 * 117.50099 * 305.89412 * 9 7 2 24 24 H 0.96998 * 119.99741 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46855 * 294.62497 * 10 9 7 26 26 H 1.08996 * 109.46749 * 174.62675 * 10 9 7 27 27 H 1.08993 * 113.61932 * 256.02156 * 12 11 10 28 28 H 1.09007 * 113.61075 * 26.84490 * 12 11 10 29 29 H 1.09000 * 109.83963 * 32.11112 * 15 13 12 30 30 H 1.09002 * 109.56721 * 271.70113 * 15 13 12 31 31 H 1.09000 * 109.48884 * 179.85071 * 16 15 13 32 32 H 1.08995 * 109.50509 * 59.79786 * 16 15 13 33 33 H 1.08998 * 109.23419 * 340.30158 * 17 16 15 34 34 H 1.08999 * 109.22847 * 220.93681 * 17 16 15 35 35 H 1.09002 * 109.48144 * 157.36622 * 18 17 16 36 36 H 1.09004 * 109.48910 * 37.34088 * 18 17 16 37 37 H 1.09000 * 109.57196 * 240.34734 * 19 18 17 38 38 H 1.08997 * 109.57199 * 119.97141 * 19 18 17 39 39 H 1.08999 * 117.49801 * 215.00640 * 22 9 7 40 40 H 1.08999 * 117.49548 * 0.03000 * 22 9 7 41 41 H 1.08987 * 117.49708 * 359.97438 * 23 9 7 42 42 H 1.09006 * 117.49470 * 144.97317 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4158 2.0930 -1.3970 5 1 1.4892 2.6281 0.7791 6 1 3.5847 1.4183 0.6177 7 6 2.0046 -1.1940 0.0005 8 1 1.4704 -2.1260 0.1126 9 6 3.5034 -1.1987 -0.1555 10 6 4.3028 -1.1553 1.1484 11 7 3.8753 -2.2563 2.0217 12 6 4.2323 -3.5687 1.4349 13 6 4.5708 -4.0249 2.8524 14 1 3.7109 -4.3777 3.4216 15 6 5.8137 -4.8965 2.9938 16 6 6.4046 -4.6879 4.3969 17 6 6.7820 -3.2169 4.5748 18 6 5.7119 -2.4770 5.3853 19 6 4.5674 -2.0639 4.4587 20 6 4.8830 -2.5338 3.0484 21 1 5.8931 -2.2667 2.7379 22 6 4.0903 -2.0029 -1.3174 23 6 4.0898 -0.4729 -1.3682 24 1 -0.4850 0.8401 -0.0004 25 1 4.1271 -0.2040 1.6506 26 1 5.3650 -1.2585 0.9270 27 1 3.3851 -4.0963 0.9970 28 1 5.0958 -3.5296 0.7708 29 1 6.5506 -4.6149 2.2416 30 1 5.5417 -5.9441 2.8642 31 1 7.2936 -5.3079 4.5131 32 1 5.6659 -4.9671 5.1481 33 1 6.8770 -2.7496 3.5946 34 1 7.7367 -3.1518 5.0968 35 1 6.1501 -1.5886 5.8402 36 1 5.3285 -3.1337 6.1662 37 1 4.4640 -0.9788 4.4675 38 1 3.6391 -2.5238 4.7976 39 1 5.0458 -2.5009 -1.1528 40 1 3.3922 -2.5281 -1.9691 41 1 3.3914 0.0075 -2.0532 42 1 5.0448 0.0358 -1.2368 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687936252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:56 Heat of formation + Delta-G solvation = 64.867042 kcal Electronic energy + Delta-G solvation = -19448.935302 eV Core-core repulsion = 16816.871234 eV Total energy + Delta-G solvation = -2632.064069 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.84770 -37.13421 -35.41301 -32.43737 -31.93394 -29.61987 -26.80154 -25.70520 -24.76748 -23.10597 -21.70046 -21.46340 -20.23358 -18.83055 -18.53303 -16.22660 -15.69476 -15.08954 -14.81536 -14.58883 -14.40078 -13.71288 -13.38967 -13.22052 -12.83813 -12.64367 -12.57811 -12.27451 -12.13517 -11.68663 -11.25588 -11.06606 -10.88750 -10.63996 -10.52146 -10.36365 -10.32620 -10.24006 -10.10253 -9.79201 -9.51538 -9.43966 -8.95078 -8.44440 -8.37576 -8.01518 -5.97385 -3.95235 3.35611 3.44801 3.48971 4.41234 4.53210 4.63697 4.70635 4.95272 5.05903 5.11842 5.24218 5.30050 5.35453 5.41469 5.53375 5.57493 5.74937 5.79635 5.79906 5.85247 6.00293 6.04581 6.05966 6.09699 6.13903 6.20873 6.23791 6.27634 6.33239 6.37876 6.43290 6.48920 6.53331 6.61244 6.69459 6.77615 7.06528 7.15753 7.23500 7.80021 7.93841 8.65966 9.08602 9.67146 11.15462 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.029120 B = 0.006826 C = 0.006374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.302329 B = 4100.806414 C = 4391.949383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.075 3.925 3 Si 0.879 3.121 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.261 1.261 7 C -0.460 4.460 8 H 0.078 0.922 9 C 0.011 3.989 10 C 0.059 3.941 11 N -0.431 5.431 12 C 0.014 3.986 13 C -0.115 4.115 14 H 0.100 0.900 15 C -0.109 4.109 16 C -0.114 4.114 17 C -0.137 4.137 18 C -0.114 4.114 19 C -0.103 4.103 20 C 0.016 3.984 21 H 0.075 0.925 22 C -0.183 4.183 23 C -0.204 4.204 24 H 0.261 0.739 25 H 0.070 0.930 26 H 0.012 0.988 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.747 -6.939 7.643 17.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.126 4.126 3 Si 0.708 3.292 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.186 1.186 7 C -0.497 4.497 8 H 0.096 0.904 9 C 0.010 3.990 10 C -0.070 4.070 11 N -0.151 5.151 12 C -0.115 4.115 13 C -0.134 4.134 14 H 0.118 0.882 15 C -0.147 4.147 16 C -0.151 4.151 17 C -0.174 4.174 18 C -0.152 4.152 19 C -0.141 4.141 20 C -0.093 4.093 21 H 0.093 0.907 22 C -0.221 4.221 23 C -0.242 4.242 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.030 0.970 27 H 0.101 0.899 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.866 -6.603 7.804 16.433 hybrid contribution 1.264 1.058 -0.397 1.696 sum 14.130 -5.545 7.407 16.890 Atomic orbital electron populations 1.69904 1.06280 1.26685 1.51210 1.24921 0.94496 0.98725 0.94485 0.86882 0.80642 0.83892 0.77834 1.20933 1.22303 1.18605 1.20104 0.86442 0.94494 1.48706 0.90443 1.19369 0.95856 0.98761 0.84999 1.22401 0.93815 0.95588 0.95180 1.69073 1.38075 1.01062 1.06936 1.23601 1.00103 0.92949 0.94803 1.22738 0.97907 0.94383 0.98332 0.88208 1.21553 0.96734 0.99599 0.96767 1.21682 1.00053 0.96050 0.97321 1.21983 0.97894 0.95917 1.01600 1.21654 0.96077 0.99671 0.97797 1.21183 0.98245 1.01034 0.93603 1.23521 0.95460 0.95539 0.94788 0.90744 1.22866 1.00589 0.92877 1.05747 1.22960 1.01129 0.94742 1.05396 0.92875 0.91146 0.96973 0.89949 0.92252 0.92207 0.92013 0.92600 0.91855 0.90332 0.93026 0.92505 0.92124 0.92189 0.91228 0.91512 0.89603 0.89403 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 2 C 0.07 2.18 5.46 -17.82 -0.10 2.08 16 3 Si 0.88 22.28 24.92 -169.99 -4.24 18.04 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.26 -6.29 5.60 56.52 0.32 -5.97 16 7 C -0.46 -12.95 9.11 -34.44 -0.31 -13.26 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 9 C 0.01 0.26 0.62 -155.66 -0.10 0.17 16 10 C 0.06 1.24 4.71 -3.82 -0.02 1.22 16 11 N -0.43 -8.45 6.07 -249.42 -1.51 -9.96 16 12 C 0.01 0.24 6.10 -11.12 -0.07 0.17 16 13 C -0.11 -1.62 3.64 -90.75 -0.33 -1.95 16 14 H 0.10 1.46 7.99 -51.93 -0.42 1.04 16 15 C -0.11 -1.22 5.55 -26.66 -0.15 -1.37 16 16 C -0.11 -1.15 5.83 -26.43 -0.15 -1.30 16 17 C -0.14 -1.46 5.44 -26.64 -0.14 -1.60 16 18 C -0.11 -1.28 6.10 -26.61 -0.16 -1.44 16 19 C -0.10 -1.46 6.06 -27.28 -0.17 -1.63 16 20 C 0.02 0.25 1.88 -75.95 -0.14 0.10 16 21 H 0.08 1.12 5.00 -51.93 -0.26 0.86 16 22 C -0.18 -3.77 9.08 -26.69 -0.24 -4.01 16 23 C -0.20 -4.45 7.61 -26.69 -0.20 -4.66 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.07 1.60 6.52 -51.93 -0.34 1.26 16 26 H 0.01 0.23 7.46 -51.93 -0.39 -0.15 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 28 H 0.06 0.96 6.86 -51.92 -0.36 0.61 16 29 H 0.06 0.67 7.98 -51.93 -0.41 0.26 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.64 7.42 -51.93 -0.39 0.25 16 33 H 0.08 0.92 4.57 -51.93 -0.24 0.69 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.63 7.60 -51.93 -0.39 0.24 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 39 H 0.07 1.21 7.42 -51.93 -0.39 0.82 16 40 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 41 H 0.09 2.03 7.13 -51.94 -0.37 1.66 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 307.34 15.07 4.63 4.63 Total: -1.00 -29.89 307.34 -10.01 -39.90 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.38 Total: 2.10 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: -2.29 Total: -27.47 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.74 Total: -37.20 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.24 Total: 18.04 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.89 -10.01 -39.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687936252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.770 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds