Wall clock time and date at job start Mon Mar 30 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99929 * 2 1 4 4 H 1.48505 * 109.46827 * 273.81921 * 3 2 1 5 5 H 1.48498 * 109.47187 * 33.81449 * 3 2 1 6 6 H 1.48496 * 109.47275 * 153.81929 * 3 2 1 7 7 C 1.37877 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00151 * 353.14191 * 7 2 1 9 9 C 1.50700 * 120.00036 * 173.13114 * 7 2 1 10 10 C 1.53008 * 115.54611 * 91.56399 * 9 7 2 11 11 N 1.46896 * 109.47098 * 54.62669 * 10 9 7 12 12 C 1.48125 * 111.00401 * 66.11846 * 11 10 9 13 13 C 1.52704 * 87.15879 * 141.43454 * 12 11 10 14 14 H 1.08997 * 113.98868 * 84.32546 * 13 12 11 15 15 C 1.52461 * 115.95329 * 219.99926 * 13 12 11 16 16 C 1.53672 * 108.69581 * 151.98727 * 15 13 12 17 17 C 1.52899 * 109.37381 * 299.81707 * 16 15 13 18 18 C 1.53280 * 110.70756 * 100.62057 * 17 16 15 19 19 C 1.52946 * 109.41854 * 277.35163 * 18 17 16 20 20 C 1.46514 * 111.00152 * 160.88836 * 11 10 9 21 21 H 1.09000 * 113.03763 * 332.64071 * 20 11 10 22 22 C 1.52999 * 117.50234 * 237.23050 * 9 7 2 23 23 C 1.53002 * 117.50099 * 305.89412 * 9 7 2 24 24 H 0.96998 * 119.99741 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46855 * 294.62497 * 10 9 7 26 26 H 1.08996 * 109.46749 * 174.62675 * 10 9 7 27 27 H 1.08993 * 113.61932 * 256.02156 * 12 11 10 28 28 H 1.09007 * 113.61075 * 26.84490 * 12 11 10 29 29 H 1.09000 * 109.83963 * 32.11112 * 15 13 12 30 30 H 1.09002 * 109.56721 * 271.70113 * 15 13 12 31 31 H 1.09000 * 109.48884 * 179.85071 * 16 15 13 32 32 H 1.08995 * 109.50509 * 59.79786 * 16 15 13 33 33 H 1.08998 * 109.23419 * 340.30158 * 17 16 15 34 34 H 1.08999 * 109.22847 * 220.93681 * 17 16 15 35 35 H 1.09002 * 109.48144 * 157.36622 * 18 17 16 36 36 H 1.09004 * 109.48910 * 37.34088 * 18 17 16 37 37 H 1.09000 * 109.57196 * 240.34734 * 19 18 17 38 38 H 1.08997 * 109.57199 * 119.97141 * 19 18 17 39 39 H 1.08999 * 117.49801 * 215.00640 * 22 9 7 40 40 H 1.08999 * 117.49548 * 0.03000 * 22 9 7 41 41 H 1.08987 * 117.49708 * 359.97438 * 23 9 7 42 42 H 1.09006 * 117.49470 * 144.97317 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4158 2.0930 -1.3970 5 1 1.4892 2.6281 0.7791 6 1 3.5847 1.4183 0.6177 7 6 2.0046 -1.1940 0.0005 8 1 1.4704 -2.1260 0.1126 9 6 3.5034 -1.1987 -0.1555 10 6 4.3028 -1.1553 1.1484 11 7 3.8753 -2.2563 2.0217 12 6 4.2323 -3.5687 1.4349 13 6 4.5708 -4.0249 2.8524 14 1 3.7109 -4.3777 3.4216 15 6 5.8137 -4.8965 2.9938 16 6 6.4046 -4.6879 4.3969 17 6 6.7820 -3.2169 4.5748 18 6 5.7119 -2.4770 5.3853 19 6 4.5674 -2.0639 4.4587 20 6 4.8830 -2.5338 3.0484 21 1 5.8931 -2.2667 2.7379 22 6 4.0903 -2.0029 -1.3174 23 6 4.0898 -0.4729 -1.3682 24 1 -0.4850 0.8401 -0.0004 25 1 4.1271 -0.2040 1.6506 26 1 5.3650 -1.2585 0.9270 27 1 3.3851 -4.0963 0.9970 28 1 5.0958 -3.5296 0.7708 29 1 6.5506 -4.6149 2.2416 30 1 5.5417 -5.9441 2.8642 31 1 7.2936 -5.3079 4.5131 32 1 5.6659 -4.9671 5.1481 33 1 6.8770 -2.7496 3.5946 34 1 7.7367 -3.1518 5.0968 35 1 6.1501 -1.5886 5.8402 36 1 5.3285 -3.1337 6.1662 37 1 4.4640 -0.9788 4.4675 38 1 3.6391 -2.5238 4.7976 39 1 5.0458 -2.5009 -1.1528 40 1 3.3922 -2.5281 -1.9691 41 1 3.3914 0.0075 -2.0532 42 1 5.0448 0.0358 -1.2368 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687936252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:56 Heat of formation + Delta-G solvation = 45.418105 kcal Electronic energy + Delta-G solvation = -19449.778671 eV Core-core repulsion = 16816.871234 eV Total energy + Delta-G solvation = -2632.907438 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.09907 -38.73705 -36.60998 -34.15433 -33.44206 -30.93607 -28.13322 -27.54255 -26.12323 -24.28567 -23.30040 -22.73043 -21.38614 -20.62710 -19.67017 -18.19893 -16.90169 -16.85721 -16.11550 -15.91281 -15.55378 -15.25795 -14.84493 -14.68648 -14.47899 -14.13615 -13.65827 -13.44629 -13.39010 -13.13527 -13.02569 -12.62444 -12.19975 -12.10491 -11.93320 -11.91006 -11.58477 -11.48050 -11.24603 -11.18199 -11.07199 -10.86172 -10.64352 -10.54532 -10.18788 -9.41352 -8.23205 -6.24355 1.32994 1.36514 1.48620 2.39737 3.04883 3.10974 3.33477 3.51321 3.71451 4.07599 4.14341 4.16463 4.21870 4.31435 4.35390 4.38241 4.42580 4.50149 4.51416 4.57345 4.63383 4.70843 4.82347 4.85209 4.97934 5.00311 5.06004 5.07943 5.15832 5.22894 5.30177 5.34579 5.37615 5.39385 5.46528 5.48529 5.59714 5.63523 5.70050 5.82965 6.34152 6.50765 6.81586 7.41157 8.93847 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.029120 B = 0.006826 C = 0.006374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.302329 B = 4100.806414 C = 4391.949383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.014 3.986 3 Si 0.939 3.061 4 H -0.272 1.272 5 H -0.302 1.302 6 H -0.237 1.237 7 C -0.453 4.453 8 H 0.026 0.974 9 C -0.016 4.016 10 C 0.069 3.931 11 N -0.475 5.475 12 C 0.014 3.986 13 C -0.098 4.098 14 H 0.088 0.912 15 C -0.103 4.103 16 C -0.111 4.111 17 C -0.135 4.135 18 C -0.108 4.108 19 C -0.104 4.104 20 C 0.020 3.980 21 H 0.090 0.910 22 C -0.162 4.162 23 C -0.200 4.200 24 H 0.261 0.739 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.054 0.946 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.628 -7.210 8.261 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.182 4.182 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.229 1.229 6 H -0.160 1.160 7 C -0.491 4.491 8 H 0.044 0.956 9 C -0.017 4.017 10 C -0.060 4.060 11 N -0.197 5.197 12 C -0.115 4.115 13 C -0.117 4.117 14 H 0.106 0.894 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.172 4.172 18 C -0.146 4.146 19 C -0.142 4.142 20 C -0.088 4.088 21 H 0.107 0.893 22 C -0.199 4.199 23 C -0.238 4.238 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 16.776 -6.894 8.421 19.997 hybrid contribution -0.030 1.022 -0.592 1.181 sum 16.746 -5.872 7.829 19.396 Atomic orbital electron populations 1.70066 1.08284 1.27533 1.53852 1.25769 0.95169 1.02646 0.94602 0.85892 0.80240 0.79002 0.78345 1.19805 1.22934 1.16006 1.20237 0.89455 0.92333 1.47083 0.95568 1.19272 0.93225 1.02009 0.87147 1.22186 0.94751 0.95383 0.93685 1.69053 1.40585 1.01647 1.08388 1.23607 0.99505 0.91761 0.96581 1.22606 0.98948 0.94386 0.95752 0.89409 1.21535 0.95142 0.99425 0.97962 1.21677 1.00803 0.96072 0.96262 1.21962 0.98304 0.95904 1.01047 1.21620 0.95137 1.00436 0.97371 1.21203 0.99137 0.99908 0.93942 1.23599 0.94976 0.96170 0.94076 0.89312 1.22864 1.01453 0.92554 1.03073 1.23006 1.01839 0.95599 1.03345 0.93004 0.93259 0.94207 0.92633 0.90774 0.91488 0.90923 0.90596 0.91875 0.91234 0.91229 0.91622 0.91173 0.93741 0.92720 0.87932 0.90883 0.91144 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.13 13.96 21.45 0.30 -61.83 16 2 C 0.01 0.83 5.46 84.65 0.46 1.29 16 3 Si 0.94 46.36 24.92 68.60 1.71 48.07 16 4 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 6 H -0.24 -10.66 5.60 99.48 0.56 -10.11 16 7 C -0.45 -26.45 9.11 25.60 0.23 -26.22 16 8 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 9 C -0.02 -0.71 0.62 -52.92 -0.03 -0.74 16 10 C 0.07 2.79 4.71 86.31 0.41 3.20 16 11 N -0.48 -18.52 6.07 -943.04 -5.72 -24.24 16 12 C 0.01 0.47 6.10 80.90 0.49 0.96 16 13 C -0.10 -2.62 3.64 -10.86 -0.04 -2.66 16 14 H 0.09 2.55 7.99 -2.39 -0.02 2.53 16 15 C -0.10 -1.97 5.55 30.64 0.17 -1.80 16 16 C -0.11 -1.81 5.83 30.79 0.18 -1.63 16 17 C -0.14 -2.36 5.44 30.65 0.17 -2.20 16 18 C -0.11 -2.14 6.10 30.67 0.19 -1.96 16 19 C -0.10 -2.86 6.06 30.24 0.18 -2.68 16 20 C 0.02 0.59 1.88 39.79 0.07 0.67 16 21 H 0.09 2.39 5.00 -2.39 -0.01 2.37 16 22 C -0.16 -6.34 9.08 30.62 0.28 -6.06 16 23 C -0.20 -8.21 7.61 30.62 0.23 -7.98 16 24 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 25 H 0.05 2.18 6.52 -2.39 -0.02 2.16 16 26 H 0.04 1.39 7.46 -2.39 -0.02 1.37 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.07 2.20 6.86 -2.38 -0.02 2.19 16 29 H 0.07 1.23 7.98 -2.39 -0.02 1.21 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.06 7.42 -2.39 -0.02 1.04 16 33 H 0.07 1.36 4.57 -2.39 -0.01 1.35 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.28 7.60 -2.39 -0.02 1.26 16 37 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.05 1.63 7.94 -2.39 -0.02 1.61 16 39 H 0.10 3.29 7.42 -2.39 -0.02 3.27 16 40 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.07 3.14 7.13 -2.39 -0.02 3.12 16 42 H 0.10 3.51 8.14 -2.38 -0.02 3.49 16 Total: -1.00 -67.85 307.34 0.11 -67.74 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.82 Total: 18.06 kcal Atomic # 6 Polarization: -50.80 SS G_CDS: 3.00 Total: -47.81 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -5.42 Total: -86.07 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.71 Total: 48.07 kcal Total: -67.85 0.11 -67.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687936252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.163 kcal (2) G-P(sol) polarization free energy of solvation -67.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds