Wall clock time and date at job start Mon Mar 30 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48502 * 109.47189 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47075 * 299.99796 * 3 2 1 6 6 H 1.48496 * 109.47143 * 60.00219 * 3 2 1 7 7 C 1.37884 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00410 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99776 * 359.97438 * 7 2 1 10 10 C 1.52994 * 115.55069 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47107 * 34.41901 * 10 9 7 12 12 C 1.50721 * 111.88566 * 70.87707 * 11 10 9 13 13 C 1.53785 * 86.71601 * 136.86889 * 12 11 10 14 14 H 1.09003 * 114.98901 * 221.90823 * 13 12 11 15 15 C 1.52612 * 112.61539 * 88.09012 * 13 12 11 16 16 C 1.50924 * 111.61804 * 178.87345 * 15 13 12 17 17 C 1.50075 * 114.92839 * 86.35494 * 16 15 13 18 18 C 1.55376 * 107.10742 * 297.06546 * 17 16 15 19 19 C 1.53433 * 106.44718 * 76.44049 * 18 17 16 20 20 C 1.47810 * 111.00212 * 169.99845 * 11 10 9 21 21 H 1.09002 * 113.95700 * 337.58872 * 20 11 10 22 22 C 1.52998 * 117.49700 * 325.67359 * 9 7 2 23 23 C 1.53000 * 117.49831 * 34.33119 * 9 7 2 24 24 H 0.96991 * 120.00420 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47551 * 274.42092 * 10 9 7 26 26 H 1.09002 * 109.47474 * 154.41567 * 10 9 7 27 27 H 1.08995 * 113.69313 * 22.40874 * 12 11 10 28 28 H 1.09001 * 113.65313 * 251.32046 * 12 11 10 29 29 H 1.08999 * 109.16774 * 58.49968 * 15 13 12 30 30 H 1.09005 * 109.49757 * 299.46296 * 15 13 12 31 31 H 1.09001 * 108.38780 * 324.94829 * 16 15 13 32 32 H 1.08995 * 108.25425 * 207.67036 * 16 15 13 33 33 H 1.09000 * 109.92664 * 177.66280 * 17 16 15 34 34 H 1.09002 * 109.92876 * 56.46431 * 17 16 15 35 35 H 1.09003 * 110.05136 * 317.20620 * 18 17 16 36 36 H 1.08997 * 110.13998 * 195.72415 * 18 17 16 37 37 H 1.08995 * 109.30301 * 136.56709 * 19 18 17 38 38 H 1.09000 * 109.30760 * 17.16790 * 19 18 17 39 39 H 1.09001 * 117.49916 * 215.00112 * 22 9 7 40 40 H 1.08995 * 117.50205 * 0.02562 * 22 9 7 41 41 H 1.09005 * 117.49764 * 359.97438 * 23 9 7 42 42 H 1.08999 * 117.50178 * 144.99560 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.1166 -3.7608 -0.0018 11 7 3.3364 -3.5186 0.7803 12 6 3.0474 -3.4216 2.2563 13 6 4.2971 -4.2924 2.4683 14 1 4.1919 -5.0732 3.2216 15 6 5.5754 -3.4667 2.5821 16 6 6.7831 -4.3409 2.8167 17 6 7.4247 -4.8806 1.5720 18 6 6.3760 -5.7910 0.8751 19 6 5.3709 -4.8531 0.1938 20 6 4.0812 -4.7758 1.0031 21 1 3.4690 -5.6737 0.9191 22 6 -0.0724 -2.5508 0.7653 23 6 -0.0729 -2.5505 -0.7654 24 1 -0.4850 0.8399 0.0004 25 1 2.3867 -4.0152 -1.0267 26 1 1.5582 -4.5850 0.4421 27 1 2.1188 -3.9087 2.5538 28 1 3.1447 -2.4120 2.6555 29 1 5.4783 -2.7696 3.4144 30 1 5.7248 -2.8990 1.6636 31 1 6.4824 -5.1822 3.4412 32 1 7.5257 -3.7582 3.3616 33 1 8.3082 -5.4635 1.8323 34 1 7.7017 -4.0595 0.9108 35 1 5.8679 -6.4098 1.6148 36 1 6.8622 -6.4220 0.1311 37 1 5.1477 -5.2284 -0.8049 38 1 5.8056 -3.8569 0.1124 39 1 -0.3265 -3.4836 1.2687 40 1 -0.3984 -1.6407 1.2687 41 1 -0.3993 -1.6401 -1.2683 42 1 -0.3275 -3.4830 -1.2691 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687936255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:02 Heat of formation + Delta-G solvation = 52.286108 kcal Electronic energy + Delta-G solvation = -19368.930043 eV Core-core repulsion = 16736.320424 eV Total energy + Delta-G solvation = -2632.609619 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12741 -36.80507 -35.38752 -31.85869 -31.48455 -29.62997 -26.86240 -25.64160 -24.43769 -22.62040 -21.57256 -20.63766 -20.50548 -18.86276 -17.81629 -16.21703 -15.52321 -15.13138 -14.94935 -14.72003 -13.79824 -13.60248 -13.13097 -12.83809 -12.66764 -12.49991 -12.31316 -11.85063 -11.61959 -11.40616 -10.99962 -10.97423 -10.76020 -10.55579 -10.38941 -10.19855 -10.13787 -10.05016 -9.92066 -9.82660 -9.66012 -9.26226 -8.69616 -8.26442 -7.94263 -7.84727 -5.83532 -3.85090 3.34363 3.42902 3.48685 4.42108 4.50986 4.73166 4.90069 5.02470 5.17501 5.21287 5.38089 5.42576 5.44634 5.60412 5.78453 5.79655 5.84389 5.94391 6.00217 6.07460 6.09279 6.17645 6.27227 6.30538 6.35200 6.39656 6.43496 6.47362 6.55599 6.60863 6.69507 6.77026 6.87755 7.09599 7.21735 7.29396 7.37656 7.75076 7.98618 8.17947 8.29756 8.69330 9.16313 9.69151 11.13487 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.025247 B = 0.006874 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.796094 B = 4072.190576 C = 4641.255786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.050 3.950 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.446 4.446 8 H 0.074 0.926 9 C 0.024 3.976 10 C 0.071 3.929 11 N -0.445 5.445 12 C 0.026 3.974 13 C -0.112 4.112 14 H 0.072 0.928 15 C -0.097 4.097 16 C -0.116 4.116 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.103 4.103 20 C 0.023 3.977 21 H 0.062 0.938 22 C -0.192 4.192 23 C -0.191 4.191 24 H 0.254 0.746 25 H 0.059 0.941 26 H 0.015 0.985 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.035 0.965 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.577 -9.836 4.396 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.150 4.150 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.484 4.484 8 H 0.092 0.908 9 C 0.023 3.977 10 C -0.058 4.058 11 N -0.167 5.167 12 C -0.103 4.103 13 C -0.131 4.131 14 H 0.090 0.910 15 C -0.135 4.135 16 C -0.153 4.153 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.141 4.141 20 C -0.087 4.087 21 H 0.080 0.920 22 C -0.230 4.230 23 C -0.230 4.230 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.033 0.967 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.730 -9.128 4.028 14.652 hybrid contribution -0.477 0.140 0.270 0.565 sum 10.253 -8.987 4.298 14.296 Atomic orbital electron populations 1.70035 1.05768 1.25479 1.51462 1.25062 0.94896 0.99156 0.95877 0.86510 0.80284 0.83839 0.77233 1.19663 1.21396 1.21399 1.20711 0.93412 0.87876 1.46388 0.90764 1.18957 0.85424 0.92777 1.00548 1.22055 0.90618 0.96128 0.96950 1.69097 1.16879 1.24228 1.06491 1.24057 0.95235 1.00521 0.90470 1.23150 0.95969 0.97874 0.96063 0.90987 1.20855 0.92179 0.97461 1.02968 1.20643 0.97442 0.99514 0.97724 1.21611 0.97277 0.99047 0.97527 1.22110 0.96587 0.97365 0.99350 1.21516 0.94352 1.00432 0.97759 1.23795 0.96153 0.93892 0.94874 0.91964 1.22873 1.06486 0.99287 0.94338 1.22815 1.06162 0.99569 0.94416 0.93533 0.92271 0.96721 0.92122 0.89369 0.92347 0.90171 0.92821 0.93133 0.92510 0.91669 0.91843 0.92531 0.92994 0.90344 0.94657 0.87348 0.87196 0.94391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.16 8.59 55.43 0.48 -24.68 16 2 C 0.05 1.37 5.27 -17.82 -0.09 1.27 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.45 -12.18 8.62 -34.44 -0.30 -12.48 16 8 H 0.07 2.06 7.22 -52.49 -0.38 1.68 16 9 C 0.02 0.59 2.05 -155.66 -0.32 0.27 16 10 C 0.07 1.51 4.98 -3.83 -0.02 1.50 16 11 N -0.45 -8.59 4.67 -221.35 -1.03 -9.62 16 12 C 0.03 0.46 7.07 -1.26 -0.01 0.45 16 13 C -0.11 -1.61 3.84 -88.92 -0.34 -1.95 16 14 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 15 C -0.10 -1.32 4.69 -27.97 -0.13 -1.45 16 16 C -0.12 -1.29 5.12 -29.23 -0.15 -1.44 16 17 C -0.12 -1.24 5.84 -26.92 -0.16 -1.40 16 18 C -0.12 -1.30 5.84 -25.25 -0.15 -1.44 16 19 C -0.10 -1.42 5.19 -26.78 -0.14 -1.56 16 20 C 0.02 0.35 3.19 -66.00 -0.21 0.14 16 21 H 0.06 0.96 7.80 -51.93 -0.40 0.55 16 22 C -0.19 -4.86 9.31 -26.70 -0.25 -5.11 16 23 C -0.19 -4.89 9.38 -26.70 -0.25 -5.14 16 24 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.01 0.30 7.53 -51.93 -0.39 -0.09 16 27 H 0.06 1.10 7.88 -51.93 -0.41 0.69 16 28 H 0.09 1.71 8.08 -51.93 -0.42 1.29 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.24 6.06 -51.93 -0.31 0.93 16 31 H 0.05 0.57 7.68 -51.93 -0.40 0.17 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.72 7.55 -51.93 -0.39 0.33 16 35 H 0.06 0.70 7.36 -51.93 -0.38 0.32 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.19 5.59 -51.93 -0.29 0.90 16 39 H 0.03 0.82 8.05 -51.93 -0.42 0.40 16 40 H 0.11 3.03 6.28 -51.93 -0.33 2.70 16 41 H 0.11 3.09 6.28 -51.93 -0.33 2.77 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 311.23 15.07 4.69 4.69 Total: -1.00 -27.79 311.23 -10.77 -38.55 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.36 Total: 2.81 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: -2.51 Total: -28.34 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: -0.56 Total: -34.31 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.79 -10.77 -38.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687936255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.839 kcal (2) G-P(sol) polarization free energy of solvation -27.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds