Wall clock time and date at job start Mon Mar 30 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48502 * 109.47189 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47075 * 299.99796 * 3 2 1 6 6 H 1.48496 * 109.47143 * 60.00219 * 3 2 1 7 7 C 1.37884 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00410 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99776 * 359.97438 * 7 2 1 10 10 C 1.52994 * 115.55069 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47107 * 34.41901 * 10 9 7 12 12 C 1.50721 * 111.88566 * 70.87707 * 11 10 9 13 13 C 1.53785 * 86.71601 * 136.86889 * 12 11 10 14 14 H 1.09003 * 114.98901 * 221.90823 * 13 12 11 15 15 C 1.52612 * 112.61539 * 88.09012 * 13 12 11 16 16 C 1.50924 * 111.61804 * 178.87345 * 15 13 12 17 17 C 1.50075 * 114.92839 * 86.35494 * 16 15 13 18 18 C 1.55376 * 107.10742 * 297.06546 * 17 16 15 19 19 C 1.53433 * 106.44718 * 76.44049 * 18 17 16 20 20 C 1.47810 * 111.00212 * 169.99845 * 11 10 9 21 21 H 1.09002 * 113.95700 * 337.58872 * 20 11 10 22 22 C 1.52998 * 117.49700 * 325.67359 * 9 7 2 23 23 C 1.53000 * 117.49831 * 34.33119 * 9 7 2 24 24 H 0.96991 * 120.00420 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47551 * 274.42092 * 10 9 7 26 26 H 1.09002 * 109.47474 * 154.41567 * 10 9 7 27 27 H 1.08995 * 113.69313 * 22.40874 * 12 11 10 28 28 H 1.09001 * 113.65313 * 251.32046 * 12 11 10 29 29 H 1.08999 * 109.16774 * 58.49968 * 15 13 12 30 30 H 1.09005 * 109.49757 * 299.46296 * 15 13 12 31 31 H 1.09001 * 108.38780 * 324.94829 * 16 15 13 32 32 H 1.08995 * 108.25425 * 207.67036 * 16 15 13 33 33 H 1.09000 * 109.92664 * 177.66280 * 17 16 15 34 34 H 1.09002 * 109.92876 * 56.46431 * 17 16 15 35 35 H 1.09003 * 110.05136 * 317.20620 * 18 17 16 36 36 H 1.08997 * 110.13998 * 195.72415 * 18 17 16 37 37 H 1.08995 * 109.30301 * 136.56709 * 19 18 17 38 38 H 1.09000 * 109.30760 * 17.16790 * 19 18 17 39 39 H 1.09001 * 117.49916 * 215.00112 * 22 9 7 40 40 H 1.08995 * 117.50205 * 0.02562 * 22 9 7 41 41 H 1.09005 * 117.49764 * 359.97438 * 23 9 7 42 42 H 1.08999 * 117.50178 * 144.99560 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.1166 -3.7608 -0.0018 11 7 3.3364 -3.5186 0.7803 12 6 3.0474 -3.4216 2.2563 13 6 4.2971 -4.2924 2.4683 14 1 4.1919 -5.0732 3.2216 15 6 5.5754 -3.4667 2.5821 16 6 6.7831 -4.3409 2.8167 17 6 7.4247 -4.8806 1.5720 18 6 6.3760 -5.7910 0.8751 19 6 5.3709 -4.8531 0.1938 20 6 4.0812 -4.7758 1.0031 21 1 3.4690 -5.6737 0.9191 22 6 -0.0724 -2.5508 0.7653 23 6 -0.0729 -2.5505 -0.7654 24 1 -0.4850 0.8399 0.0004 25 1 2.3867 -4.0152 -1.0267 26 1 1.5582 -4.5850 0.4421 27 1 2.1188 -3.9087 2.5538 28 1 3.1447 -2.4120 2.6555 29 1 5.4783 -2.7696 3.4144 30 1 5.7248 -2.8990 1.6636 31 1 6.4824 -5.1822 3.4412 32 1 7.5257 -3.7582 3.3616 33 1 8.3082 -5.4635 1.8323 34 1 7.7017 -4.0595 0.9108 35 1 5.8679 -6.4098 1.6148 36 1 6.8622 -6.4220 0.1311 37 1 5.1477 -5.2284 -0.8049 38 1 5.8056 -3.8569 0.1124 39 1 -0.3265 -3.4836 1.2687 40 1 -0.3984 -1.6407 1.2687 41 1 -0.3993 -1.6401 -1.2683 42 1 -0.3275 -3.4830 -1.2691 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687936255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:02 Heat of formation + Delta-G solvation = 38.399586 kcal Electronic energy + Delta-G solvation = -19369.532208 eV Core-core repulsion = 16736.320424 eV Total energy + Delta-G solvation = -2633.211784 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.40915 -38.53599 -36.70226 -33.64238 -32.84945 -31.03985 -28.13581 -27.60446 -25.87244 -23.92958 -22.83453 -22.61481 -21.46984 -20.80006 -19.02265 -18.04434 -17.10478 -16.50988 -16.31936 -16.23130 -15.46412 -15.00290 -14.71011 -14.26155 -13.93977 -13.62879 -13.43449 -13.31108 -13.04440 -12.94657 -12.82013 -12.61166 -12.40453 -12.18668 -11.96016 -11.69929 -11.59852 -11.43085 -11.28471 -11.07825 -10.95929 -10.81724 -10.67641 -10.22688 -9.99284 -9.34687 -7.95473 -6.02704 1.39208 1.42540 1.54314 2.46324 3.03311 3.16508 3.52806 3.85663 3.91792 4.05150 4.21953 4.27890 4.29547 4.34142 4.40832 4.53725 4.57297 4.63881 4.71365 4.80457 4.83639 4.85877 4.89700 5.04924 5.09489 5.15036 5.25551 5.26769 5.27834 5.35317 5.39292 5.41380 5.44845 5.49397 5.59075 5.66968 5.75162 5.81150 5.99894 6.19076 6.42692 6.63853 7.02239 7.53833 8.99585 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.025247 B = 0.006874 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.796094 B = 4072.190576 C = 4641.255786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.004 3.996 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.458 4.458 8 H 0.065 0.935 9 C 0.017 3.983 10 C 0.081 3.919 11 N -0.470 5.470 12 C 0.019 3.981 13 C -0.091 4.091 14 H 0.098 0.902 15 C -0.095 4.095 16 C -0.112 4.112 17 C -0.115 4.115 18 C -0.109 4.109 19 C -0.100 4.100 20 C 0.026 3.974 21 H 0.070 0.930 22 C -0.187 4.187 23 C -0.195 4.195 24 H 0.253 0.747 25 H 0.056 0.944 26 H 0.025 0.975 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.360 -11.429 5.135 17.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.496 4.496 8 H 0.083 0.917 9 C 0.016 3.984 10 C -0.048 4.048 11 N -0.192 5.192 12 C -0.110 4.110 13 C -0.110 4.110 14 H 0.116 0.884 15 C -0.133 4.133 16 C -0.149 4.149 17 C -0.153 4.153 18 C -0.147 4.147 19 C -0.138 4.138 20 C -0.083 4.083 21 H 0.088 0.912 22 C -0.225 4.225 23 C -0.233 4.233 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.521 -10.727 4.766 17.163 hybrid contribution -1.061 0.655 0.029 1.247 sum 11.460 -10.072 4.795 15.993 Atomic orbital electron populations 1.70183 1.06780 1.25912 1.52002 1.25733 0.95675 1.02076 0.95862 0.85588 0.79182 0.80255 0.77088 1.19353 1.21229 1.21142 1.20883 0.93133 0.89229 1.46330 0.91711 1.19124 0.85647 0.93813 0.99798 1.21871 0.91110 0.94340 0.97446 1.69074 1.16132 1.27008 1.06965 1.24043 0.97039 1.00012 0.89899 1.23087 0.94451 0.97400 0.96074 0.88439 1.20834 0.93057 0.97716 1.01689 1.20591 0.96399 0.99565 0.98361 1.21609 0.97816 0.98904 0.96954 1.22081 0.95944 0.96953 0.99710 1.21509 0.94207 1.00327 0.97752 1.23884 0.96230 0.92465 0.95725 0.91221 1.22702 1.06846 0.98898 0.94055 1.22711 1.06870 0.99300 0.94447 0.93760 0.92530 0.95732 0.92476 0.91731 0.92490 0.92610 0.91520 0.92147 0.90358 0.92587 0.91057 0.91104 0.93399 0.92075 0.92509 0.90267 0.90079 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.67 8.59 21.45 0.18 -52.49 16 2 C 0.00 0.21 5.27 84.66 0.45 0.66 16 3 Si 0.95 45.12 29.54 68.60 2.03 47.15 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.46 -25.45 8.62 25.60 0.22 -25.23 16 8 H 0.06 3.66 7.22 -2.91 -0.02 3.64 16 9 C 0.02 0.85 2.05 -52.93 -0.11 0.74 16 10 C 0.08 3.42 4.98 86.30 0.43 3.85 16 11 N -0.47 -17.97 4.67 -854.21 -3.99 -21.96 16 12 C 0.02 0.66 7.07 85.81 0.61 1.27 16 13 C -0.09 -2.46 3.84 -9.69 -0.04 -2.50 16 14 H 0.10 2.19 8.04 -2.39 -0.02 2.17 16 15 C -0.10 -2.44 4.69 29.79 0.14 -2.30 16 16 C -0.11 -2.15 5.12 28.98 0.15 -2.00 16 17 C -0.12 -2.09 5.84 30.47 0.18 -1.91 16 18 C -0.11 -2.08 5.84 31.56 0.18 -1.90 16 19 C -0.10 -2.61 5.19 30.56 0.16 -2.45 16 20 C 0.03 0.77 3.19 45.52 0.15 0.91 16 21 H 0.07 1.97 7.80 -2.39 -0.02 1.95 16 22 C -0.19 -9.54 9.31 30.62 0.29 -9.26 16 23 C -0.19 -10.03 9.38 30.62 0.29 -9.74 16 24 H 0.25 14.14 8.31 -92.72 -0.77 13.37 16 25 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.02 0.97 7.53 -2.39 -0.02 0.96 16 27 H 0.06 2.04 7.88 -2.39 -0.02 2.02 16 28 H 0.06 2.56 8.08 -2.39 -0.02 2.54 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.71 6.06 -2.38 -0.01 1.69 16 31 H 0.07 1.14 7.68 -2.39 -0.02 1.12 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.12 7.55 -2.39 -0.02 1.11 16 35 H 0.07 1.29 7.36 -2.39 -0.02 1.27 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.82 5.59 -2.39 -0.01 1.80 16 39 H 0.06 2.61 8.05 -2.39 -0.02 2.59 16 40 H 0.08 4.53 6.28 -2.39 -0.02 4.52 16 41 H 0.08 4.67 6.28 -2.38 -0.01 4.65 16 42 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -60.04 311.23 2.28 -57.76 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.97 Total: 19.39 kcal Atomic # 6 Polarization: -52.94 SS G_CDS: 3.09 Total: -49.85 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -3.80 Total: -74.45 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -60.04 2.28 -57.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687936255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.161 kcal (2) G-P(sol) polarization free energy of solvation -60.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds