Wall clock time and date at job start Mon Mar 30 2020 06:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00295 * 2 1 4 4 H 1.48497 * 109.47413 * 270.00452 * 3 2 1 5 5 H 1.48503 * 109.46757 * 30.00321 * 3 2 1 6 6 H 1.48495 * 109.47313 * 150.00036 * 3 2 1 7 7 C 1.37882 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99467 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00308 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46954 * 179.97438 * 9 7 2 11 11 C 1.53089 * 109.53072 * 294.67909 * 10 9 7 12 12 C 1.53039 * 109.29423 * 182.43701 * 11 10 9 13 13 N 1.46843 * 109.51311 * 59.18343 * 12 11 10 14 14 C 1.46901 * 110.99849 * 174.16882 * 13 12 11 15 15 C 1.52992 * 109.47067 * 284.21865 * 14 13 12 16 16 C 1.54630 * 111.04003 * 287.92008 * 15 14 13 17 17 C 1.51094 * 104.73209 * 217.33294 * 16 15 14 18 18 C 1.30533 * 111.10249 * 16.44161 * 17 16 15 19 19 C 1.51100 * 111.10364 * 359.97438 * 18 17 16 20 20 C 1.46847 * 111.19904 * 298.26197 * 13 12 11 21 21 C 1.53041 * 109.52369 * 61.74560 * 20 13 12 22 22 H 0.96997 * 119.99399 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47211 * 59.99687 * 9 7 2 24 24 H 1.09000 * 109.47001 * 299.99790 * 9 7 2 25 25 H 1.09008 * 109.51970 * 54.87651 * 10 9 7 26 26 H 1.09005 * 109.48895 * 62.49315 * 11 10 9 27 27 H 1.09005 * 109.50326 * 302.38398 * 11 10 9 28 28 H 1.09000 * 109.45669 * 299.17204 * 12 11 10 29 29 H 1.08996 * 109.46175 * 179.19535 * 12 11 10 30 30 H 1.09007 * 109.47086 * 44.22006 * 14 13 12 31 31 H 1.09008 * 109.47093 * 164.21765 * 14 13 12 32 32 H 1.08997 * 110.91480 * 51.93571 * 15 14 13 33 33 H 1.09005 * 110.38784 * 336.15174 * 16 15 14 34 34 H 1.09008 * 110.38788 * 98.52125 * 16 15 14 35 35 H 1.07996 * 124.45347 * 196.45952 * 17 16 15 36 36 H 1.07996 * 124.44967 * 179.97438 * 18 17 16 37 37 H 1.08997 * 110.39098 * 224.75577 * 19 18 17 38 38 H 1.08997 * 110.48289 * 102.42362 * 19 18 17 39 39 H 1.09004 * 109.46532 * 181.75691 * 20 13 12 40 40 H 1.09002 * 109.46922 * 301.73955 * 20 13 12 41 41 H 1.09006 * 109.50454 * 60.75894 * 21 20 13 42 42 H 1.08998 * 109.50992 * 180.83811 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 3.6246 -3.3196 1.3103 12 6 4.1892 -4.7419 1.3307 13 7 5.6516 -4.6909 1.2078 14 6 6.2398 -6.0281 1.3622 15 6 6.2292 -6.4223 2.8405 16 6 7.2772 -5.6126 3.6385 17 6 7.8327 -6.5914 4.6466 18 6 7.5436 -7.8208 4.3167 19 6 6.7465 -7.8667 3.0339 20 6 6.0566 -4.0818 -0.0655 21 6 5.5475 -2.6399 -0.1275 22 1 -0.4849 0.8401 0.0004 23 1 3.8753 -0.6804 0.8888 24 1 3.8746 -0.6801 -0.8911 25 1 3.5853 -3.1772 -0.8410 26 1 2.5379 -3.3583 1.3858 27 1 4.0286 -2.7557 2.1512 28 1 3.7742 -5.3093 0.4977 29 1 3.9203 -5.2259 2.2696 30 1 5.6571 -6.7497 0.7895 31 1 7.2666 -6.0179 0.9963 32 1 5.2335 -6.3032 3.2678 33 1 8.0680 -5.2589 2.9769 34 1 6.8022 -4.7731 4.1463 35 1 8.3949 -6.3108 5.5250 36 1 7.8357 -8.6909 4.8858 37 1 5.9110 -8.5599 3.1305 38 1 7.3843 -8.1559 2.1987 39 1 7.1440 -4.0865 -0.1409 40 1 5.6328 -4.6522 -0.8921 41 1 5.9817 -2.0652 0.6908 42 1 5.8354 -2.1927 -1.0789 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692120142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:53 Heat of formation + Delta-G solvation = -3.013910 kcal Electronic energy + Delta-G solvation = -18430.440986 eV Core-core repulsion = 15795.433379 eV Total energy + Delta-G solvation = -2635.007608 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.41361 -38.05315 -34.57108 -32.33373 -30.54871 -30.16000 -28.25072 -27.90504 -24.78894 -22.88454 -22.63054 -20.48667 -19.82908 -19.05832 -18.72960 -16.69283 -16.22056 -15.70784 -15.03411 -14.60182 -14.26609 -13.62196 -13.51388 -13.02743 -12.82532 -12.73366 -12.47857 -12.21555 -12.19809 -11.78218 -11.48979 -11.27524 -11.19043 -11.09965 -10.78314 -10.72667 -10.68352 -10.44857 -10.11926 -9.67576 -9.55156 -9.21806 -8.97355 -8.96214 -8.48416 -8.06477 -5.99540 -3.96219 2.15318 3.34006 3.41516 3.46212 4.01406 4.49891 4.59870 4.63845 4.84352 5.19338 5.23339 5.31741 5.34280 5.37313 5.39647 5.58960 5.60243 5.65450 5.72393 5.73504 5.79893 5.88770 5.95402 5.98623 6.03745 6.10858 6.20039 6.33269 6.38897 6.43528 6.53365 6.61497 6.79492 6.90035 6.99794 7.08584 7.30690 7.34746 7.42394 7.55944 7.86271 8.59958 9.05812 9.63952 11.13949 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.039901 B = 0.004179 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.567464 B = 6699.158429 C = 6740.297413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.073 4.073 11 C -0.100 4.100 12 C 0.055 3.945 13 N -0.535 5.535 14 C 0.065 3.935 15 C -0.086 4.086 16 C -0.085 4.085 17 C -0.165 4.165 18 C -0.176 4.176 19 C -0.096 4.096 20 C 0.060 3.940 21 C -0.114 4.114 22 H 0.261 0.739 23 H 0.016 0.984 24 H 0.009 0.991 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.027 0.973 41 H 0.065 0.935 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.545 -13.745 5.253 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.091 4.091 11 C -0.138 4.138 12 C -0.072 4.072 13 N -0.260 5.260 14 C -0.064 4.064 15 C -0.105 4.105 16 C -0.122 4.122 17 C -0.182 4.182 18 C -0.194 4.194 19 C -0.134 4.134 20 C -0.068 4.068 21 C -0.152 4.152 22 H 0.071 0.929 23 H 0.034 0.966 24 H 0.027 0.973 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.046 0.954 41 H 0.083 0.917 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.559 -13.320 5.613 21.237 hybrid contribution 0.055 0.369 -0.617 0.721 sum 15.614 -12.950 4.996 20.892 Atomic orbital electron populations 1.69921 1.06283 1.26733 1.51634 1.25036 0.94694 0.99112 0.94765 0.86800 0.80438 0.83782 0.78394 1.20460 1.21525 1.18983 1.21166 0.89566 0.94269 1.50137 0.90993 1.19609 0.97032 0.91870 0.96096 1.21041 0.92476 0.98748 0.96877 1.21541 1.00997 0.92970 0.98300 1.22227 0.86296 0.98811 0.99864 1.61903 1.10070 1.19868 1.34130 1.22091 0.99310 0.89785 0.95164 1.22012 0.99522 0.93626 0.95319 1.21297 0.97550 0.97510 0.95848 1.23440 1.00076 0.95618 0.99111 1.23223 1.00797 0.97545 0.97842 1.21396 0.98810 0.97177 0.96025 1.22086 0.99157 0.96177 0.89332 1.21724 0.97561 0.94597 1.01328 0.92878 0.96569 0.97271 0.92526 0.90499 0.91957 0.95446 0.91472 0.94894 0.91257 0.90097 0.90708 0.90879 0.86302 0.86347 0.91465 0.90919 0.91722 0.95430 0.91650 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.12 13.96 55.43 0.77 -27.35 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.51 -14.55 9.00 -34.44 -0.31 -14.86 16 8 H 0.07 2.18 7.33 -52.48 -0.38 1.80 16 9 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 10 C -0.07 -1.44 2.20 -90.51 -0.20 -1.64 16 11 C -0.10 -1.87 5.15 -26.66 -0.14 -2.01 16 12 C 0.06 0.85 5.29 -3.84 -0.02 0.83 16 13 N -0.54 -7.47 4.52 -234.67 -1.06 -8.53 16 14 C 0.06 0.74 4.31 -3.83 -0.02 0.73 16 15 C -0.09 -0.93 3.21 -88.91 -0.29 -1.21 16 16 C -0.09 -0.92 6.31 -26.83 -0.17 -1.09 16 17 C -0.16 -1.60 10.78 -35.70 -0.38 -1.98 16 18 C -0.18 -1.62 10.78 -35.70 -0.38 -2.01 16 19 C -0.10 -0.90 6.38 -26.83 -0.17 -1.07 16 20 C 0.06 0.85 5.43 -3.83 -0.02 0.83 16 21 C -0.11 -1.88 5.38 -26.65 -0.14 -2.03 16 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 23 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 24 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 25 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 26 H 0.08 1.59 7.05 -51.93 -0.37 1.22 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.96 6.66 -51.93 -0.35 0.61 16 30 H 0.03 0.38 8.00 -51.92 -0.42 -0.04 16 31 H 0.07 0.74 7.60 -51.92 -0.39 0.35 16 32 H 0.08 0.96 6.73 -51.93 -0.35 0.61 16 33 H 0.07 0.82 7.76 -51.93 -0.40 0.41 16 34 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.63 7.89 -51.93 -0.41 0.22 16 39 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 40 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 321.18 15.07 4.84 4.84 Total: -1.00 -29.81 321.18 -10.20 -40.00 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -7.64 Total: -2.28 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -2.44 Total: -24.02 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.29 Total: -35.88 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.81 -10.20 -40.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692120142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.989 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds