Wall clock time and date at job start Mon Mar 30 2020 06:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00295 * 2 1 4 4 H 1.48497 * 109.47413 * 270.00452 * 3 2 1 5 5 H 1.48503 * 109.46757 * 30.00321 * 3 2 1 6 6 H 1.48495 * 109.47313 * 150.00036 * 3 2 1 7 7 C 1.37882 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99467 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00308 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46954 * 179.97438 * 9 7 2 11 11 C 1.53089 * 109.53072 * 294.67909 * 10 9 7 12 12 C 1.53039 * 109.29423 * 182.43701 * 11 10 9 13 13 N 1.46843 * 109.51311 * 59.18343 * 12 11 10 14 14 C 1.46901 * 110.99849 * 174.16882 * 13 12 11 15 15 C 1.52992 * 109.47067 * 284.21865 * 14 13 12 16 16 C 1.54630 * 111.04003 * 287.92008 * 15 14 13 17 17 C 1.51094 * 104.73209 * 217.33294 * 16 15 14 18 18 C 1.30533 * 111.10249 * 16.44161 * 17 16 15 19 19 C 1.51100 * 111.10364 * 359.97438 * 18 17 16 20 20 C 1.46847 * 111.19904 * 298.26197 * 13 12 11 21 21 C 1.53041 * 109.52369 * 61.74560 * 20 13 12 22 22 H 0.96997 * 119.99399 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47211 * 59.99687 * 9 7 2 24 24 H 1.09000 * 109.47001 * 299.99790 * 9 7 2 25 25 H 1.09008 * 109.51970 * 54.87651 * 10 9 7 26 26 H 1.09005 * 109.48895 * 62.49315 * 11 10 9 27 27 H 1.09005 * 109.50326 * 302.38398 * 11 10 9 28 28 H 1.09000 * 109.45669 * 299.17204 * 12 11 10 29 29 H 1.08996 * 109.46175 * 179.19535 * 12 11 10 30 30 H 1.09007 * 109.47086 * 44.22006 * 14 13 12 31 31 H 1.09008 * 109.47093 * 164.21765 * 14 13 12 32 32 H 1.08997 * 110.91480 * 51.93571 * 15 14 13 33 33 H 1.09005 * 110.38784 * 336.15174 * 16 15 14 34 34 H 1.09008 * 110.38788 * 98.52125 * 16 15 14 35 35 H 1.07996 * 124.45347 * 196.45952 * 17 16 15 36 36 H 1.07996 * 124.44967 * 179.97438 * 18 17 16 37 37 H 1.08997 * 110.39098 * 224.75577 * 19 18 17 38 38 H 1.08997 * 110.48289 * 102.42362 * 19 18 17 39 39 H 1.09004 * 109.46532 * 181.75691 * 20 13 12 40 40 H 1.09002 * 109.46922 * 301.73955 * 20 13 12 41 41 H 1.09006 * 109.50454 * 60.75894 * 21 20 13 42 42 H 1.08998 * 109.50992 * 180.83811 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 3.6246 -3.3196 1.3103 12 6 4.1892 -4.7419 1.3307 13 7 5.6516 -4.6909 1.2078 14 6 6.2398 -6.0281 1.3622 15 6 6.2292 -6.4223 2.8405 16 6 7.2772 -5.6126 3.6385 17 6 7.8327 -6.5914 4.6466 18 6 7.5436 -7.8208 4.3167 19 6 6.7465 -7.8667 3.0339 20 6 6.0566 -4.0818 -0.0655 21 6 5.5475 -2.6399 -0.1275 22 1 -0.4849 0.8401 0.0004 23 1 3.8753 -0.6804 0.8888 24 1 3.8746 -0.6801 -0.8911 25 1 3.5853 -3.1772 -0.8410 26 1 2.5379 -3.3583 1.3858 27 1 4.0286 -2.7557 2.1512 28 1 3.7742 -5.3093 0.4977 29 1 3.9203 -5.2259 2.2696 30 1 5.6571 -6.7497 0.7895 31 1 7.2666 -6.0179 0.9963 32 1 5.2335 -6.3032 3.2678 33 1 8.0680 -5.2589 2.9769 34 1 6.8022 -4.7731 4.1463 35 1 8.3949 -6.3108 5.5250 36 1 7.8357 -8.6909 4.8858 37 1 5.9110 -8.5599 3.1305 38 1 7.3843 -8.1559 2.1987 39 1 7.1440 -4.0865 -0.1409 40 1 5.6328 -4.6522 -0.8921 41 1 5.9817 -2.0652 0.6908 42 1 5.8354 -2.1927 -1.0789 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692120142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:53 Heat of formation + Delta-G solvation = -19.523876 kcal Electronic energy + Delta-G solvation = -18431.156912 eV Core-core repulsion = 15795.433379 eV Total energy + Delta-G solvation = -2635.723533 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.45666 -39.11582 -36.10343 -34.31429 -31.84388 -31.44464 -29.52728 -28.92673 -26.17197 -24.30453 -23.94881 -22.06234 -20.70006 -20.49083 -19.53536 -18.85320 -17.12601 -16.70574 -16.32695 -16.06880 -15.71240 -15.18483 -14.80598 -14.69347 -14.33005 -13.93437 -13.52094 -13.50359 -13.32582 -13.04095 -12.92496 -12.65329 -12.34382 -12.19389 -12.06078 -12.00585 -11.90250 -11.80383 -11.63566 -11.55258 -11.21017 -10.89673 -10.78329 -10.70013 -9.69938 -9.17584 -8.26419 -6.28543 1.35450 1.37585 1.44722 1.49751 2.37811 2.95488 3.09102 3.81205 3.83126 3.92401 4.04500 4.06847 4.13815 4.39089 4.45465 4.47972 4.55626 4.60155 4.65385 4.74539 4.80458 4.86090 4.93218 4.95254 4.95604 4.99218 5.10619 5.12308 5.20334 5.22523 5.25331 5.35061 5.41733 5.48504 5.53123 5.70777 5.72624 5.75764 6.08971 6.20747 6.28604 6.34651 6.78668 7.35242 8.90377 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.039901 B = 0.004179 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.567464 B = 6699.158429 C = 6740.297413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.248 1.248 7 C -0.519 4.519 8 H 0.033 0.967 9 C -0.005 4.005 10 C -0.071 4.071 11 C -0.096 4.096 12 C 0.067 3.933 13 N -0.541 5.541 14 C 0.068 3.932 15 C -0.087 4.087 16 C -0.085 4.085 17 C -0.178 4.178 18 C -0.174 4.174 19 C -0.095 4.095 20 C 0.064 3.936 21 C -0.107 4.107 22 H 0.264 0.736 23 H 0.015 0.985 24 H 0.014 0.986 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.024 0.976 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.029 0.971 41 H 0.064 0.936 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.414 -14.252 5.335 23.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.172 1.172 7 C -0.557 4.557 8 H 0.051 0.949 9 C -0.043 4.043 10 C -0.090 4.090 11 C -0.134 4.134 12 C -0.061 4.061 13 N -0.265 5.265 14 C -0.059 4.059 15 C -0.106 4.106 16 C -0.122 4.122 17 C -0.195 4.195 18 C -0.192 4.192 19 C -0.132 4.132 20 C -0.064 4.064 21 C -0.145 4.145 22 H 0.073 0.927 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.449 -13.848 5.695 23.761 hybrid contribution -0.910 0.453 -0.635 1.199 sum 17.539 -13.395 5.059 22.642 Atomic orbital electron populations 1.70076 1.08242 1.27926 1.53295 1.26004 0.95572 1.03410 0.94489 0.85686 0.79501 0.78537 0.79091 1.19249 1.21140 1.17197 1.21479 0.92049 0.92877 1.49327 0.94866 1.19568 0.93911 0.94794 0.96011 1.20968 0.95248 0.95969 0.96801 1.21409 0.99069 0.95317 0.97564 1.22018 0.87537 0.96171 1.00358 1.61879 1.08719 1.21687 1.34238 1.22135 0.99870 0.88268 0.95671 1.21981 0.98899 0.94884 0.94797 1.21266 0.97440 0.97355 0.96125 1.23527 1.00886 0.95577 0.99554 1.23437 1.00030 0.97982 0.97705 1.21400 0.99206 0.96063 0.96566 1.22074 1.00636 0.94348 0.89339 1.21637 0.94299 0.96689 1.01891 0.92694 0.96631 0.96730 0.93911 0.93820 0.92585 0.95733 0.90451 0.94521 0.89714 0.91493 0.90721 0.92407 0.85205 0.84627 0.90880 0.89860 0.89019 0.95316 0.91765 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.97 13.96 21.45 0.30 -60.67 16 2 C 0.00 0.08 5.47 84.66 0.46 0.54 16 3 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 7 C -0.52 -30.37 9.00 25.60 0.23 -30.14 16 8 H 0.03 2.13 7.33 -2.91 -0.02 2.11 16 9 C -0.01 -0.26 3.52 29.85 0.11 -0.16 16 10 C -0.07 -2.82 2.20 -10.72 -0.02 -2.84 16 11 C -0.10 -3.65 5.15 30.64 0.16 -3.49 16 12 C 0.07 2.02 5.29 86.33 0.46 2.48 16 13 N -0.54 -14.04 4.52 -896.35 -4.05 -18.09 16 14 C 0.07 1.39 4.31 86.30 0.37 1.76 16 15 C -0.09 -1.71 3.21 -9.69 -0.03 -1.74 16 16 C -0.08 -1.69 6.31 30.53 0.19 -1.50 16 17 C -0.18 -3.09 10.78 26.25 0.28 -2.81 16 18 C -0.17 -2.76 10.78 26.25 0.28 -2.47 16 19 C -0.09 -1.52 6.38 30.53 0.19 -1.33 16 20 C 0.06 1.62 5.43 86.33 0.47 2.09 16 21 C -0.11 -3.32 5.38 30.65 0.16 -3.16 16 22 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 23 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 24 H 0.01 0.67 7.57 -2.39 -0.02 0.66 16 25 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.04 1.91 7.05 -2.38 -0.02 1.90 16 27 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 2.17 6.66 -2.39 -0.02 2.15 16 30 H 0.04 0.74 8.00 -2.38 -0.02 0.72 16 31 H 0.08 1.51 7.60 -2.38 -0.02 1.49 16 32 H 0.07 1.51 6.73 -2.39 -0.02 1.49 16 33 H 0.07 1.47 7.76 -2.38 -0.02 1.45 16 34 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.13 1.92 8.06 -2.91 -0.02 1.89 16 36 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.18 7.89 -2.39 -0.02 1.16 16 39 H 0.09 1.90 7.93 -2.39 -0.02 1.88 16 40 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -65.31 321.18 2.34 -62.97 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.89 Total: 11.33 kcal Atomic # 6 Polarization: -46.09 SS G_CDS: 3.32 Total: -42.77 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -3.75 Total: -78.76 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -65.31 2.34 -62.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692120142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.447 kcal (2) G-P(sol) polarization free energy of solvation -65.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds