Wall clock time and date at job start Mon Mar 30 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99752 * 2 1 4 4 H 1.48500 * 109.46996 * 270.00098 * 3 2 1 5 5 H 1.48502 * 109.47007 * 30.00025 * 3 2 1 6 6 H 1.48491 * 109.46878 * 150.00138 * 3 2 1 7 7 C 1.37869 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00121 * 183.23906 * 7 2 1 9 9 C 1.50707 * 120.00059 * 3.23545 * 7 2 1 10 10 C 1.53001 * 115.54720 * 324.02889 * 9 7 2 11 11 N 1.46898 * 109.47165 * 302.85593 * 10 9 7 12 12 C 1.46900 * 110.99936 * 185.17726 * 11 10 9 13 13 C 1.53005 * 109.46752 * 184.68696 * 12 11 10 14 14 C 1.52235 * 115.23947 * 80.05182 * 13 12 11 15 15 C 1.52023 * 115.88418 * 148.12944 * 13 12 11 16 16 H 1.09002 * 116.56227 * 1.72144 * 15 13 12 17 17 C 1.52712 * 120.51212 * 150.04721 * 15 13 12 18 18 C 1.52877 * 110.14852 * 338.49925 * 17 15 13 19 19 C 1.53294 * 108.58542 * 54.52001 * 18 17 15 20 20 C 1.52075 * 114.63883 * 294.73899 * 13 12 11 21 21 C 1.52996 * 117.49587 * 109.69394 * 9 7 2 22 22 C 1.52998 * 117.50097 * 178.35613 * 9 7 2 23 23 H 0.96996 * 120.00133 * 5.00549 * 1 2 3 24 24 H 1.08998 * 109.46770 * 182.85655 * 10 9 7 25 25 H 1.08996 * 109.47423 * 62.86093 * 10 9 7 26 26 H 1.00902 * 110.99897 * 61.22167 * 11 10 9 27 27 H 1.08997 * 109.47032 * 64.69422 * 12 11 10 28 28 H 1.08998 * 109.47299 * 304.68839 * 12 11 10 29 29 H 1.09010 * 117.55484 * 359.40991 * 14 13 12 30 30 H 1.09003 * 117.58106 * 214.13964 * 14 13 12 31 31 H 1.09003 * 109.35641 * 218.29249 * 17 15 13 32 32 H 1.08994 * 109.35877 * 98.70654 * 17 15 13 33 33 H 1.09001 * 109.62289 * 294.79178 * 18 17 15 34 34 H 1.09000 * 109.61755 * 174.25184 * 18 17 15 35 35 H 1.09001 * 109.62283 * 165.81923 * 19 18 17 36 36 H 1.09012 * 109.76435 * 45.37571 * 19 18 17 37 37 H 1.08990 * 109.26689 * 72.88755 * 20 13 12 38 38 H 1.08997 * 109.26686 * 313.38152 * 20 13 12 39 39 H 1.09005 * 117.49643 * 215.00148 * 21 9 7 40 40 H 1.08998 * 117.50211 * 0.02902 * 21 9 7 41 41 H 1.09004 * 117.49397 * 359.97438 * 22 9 7 42 42 H 1.08999 * 117.49802 * 144.97144 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0832 -1.1947 0.0523 9 6 1.2529 -2.4981 -0.0748 10 6 -0.0826 -2.5333 0.6710 11 7 0.1372 -2.2011 2.0849 12 6 -1.1034 -2.3445 2.8584 13 6 -0.8644 -1.8795 4.2963 14 6 -0.8989 -0.3720 4.5053 15 6 -2.0581 -1.2519 4.9980 16 1 -2.9894 -1.2110 4.4330 17 6 -2.2156 -1.3666 6.5126 18 6 -1.4052 -2.5516 7.0381 19 6 0.0469 -2.3953 6.5723 20 6 0.1199 -2.7312 5.0828 21 6 1.3589 -3.3015 -1.3725 22 6 2.0764 -3.7871 -0.1105 23 1 -0.4850 0.8368 -0.0733 24 1 -0.5148 -3.5310 0.5951 25 1 -0.7648 -1.8073 0.2289 26 1 0.5193 -1.2724 2.1830 27 1 -1.4111 -3.3901 2.8611 28 1 -1.8864 -1.7365 2.4053 29 1 -1.0778 0.2543 3.6312 30 1 -0.2309 0.0488 5.2569 31 1 -3.2680 -1.5121 6.7564 32 1 -1.8613 -0.4495 6.9831 33 1 -1.8178 -3.4805 6.6445 34 1 -1.4407 -2.5649 8.1274 35 1 0.6865 -3.0770 7.1330 36 1 0.3770 -1.3688 6.7326 37 1 1.1299 -2.5409 4.7201 38 1 -0.1213 -3.7845 4.9394 39 1 0.4771 -3.8554 -1.6949 40 1 1.9726 -2.8872 -2.1723 41 1 3.1619 -3.6918 -0.0807 42 1 1.6669 -4.6601 0.3977 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693572026.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:27 Heat of formation + Delta-G solvation = 29.407663 kcal Electronic energy + Delta-G solvation = -19004.329965 eV Core-core repulsion = 16370.728262 eV Total energy + Delta-G solvation = -2633.601703 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.60713 -36.82554 -34.18778 -32.44419 -32.02617 -30.43422 -26.36111 -25.38517 -24.37693 -22.79180 -21.49213 -21.02529 -20.16647 -18.94619 -17.83862 -16.23746 -15.58889 -14.77128 -14.25776 -14.04222 -13.83716 -13.73148 -13.58306 -13.32632 -13.03534 -12.47251 -12.11705 -11.82840 -11.54080 -11.31536 -11.10785 -10.97959 -10.76978 -10.74397 -10.60027 -10.52994 -10.35830 -10.10572 -9.93820 -9.48030 -9.25921 -9.04497 -8.87043 -8.67388 -8.10693 -7.07520 -5.89937 -4.09247 3.26347 3.34045 3.37812 4.04756 4.36320 4.81128 4.96312 4.99913 5.02180 5.19227 5.37920 5.42872 5.50855 5.58381 5.69483 5.75791 5.85073 5.91930 6.03223 6.13457 6.17123 6.24712 6.31442 6.36588 6.37720 6.43607 6.53683 6.56165 6.61896 6.66334 6.79370 6.80725 6.85483 6.95642 7.03431 7.33142 7.42136 7.66133 8.06665 8.42830 8.49601 8.78196 8.96413 9.51862 10.95603 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.021909 B = 0.006730 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.680231 B = 4159.596680 C = 4824.513771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.469 4.469 8 H 0.058 0.942 9 C 0.058 3.942 10 C 0.100 3.900 11 N -0.669 5.669 12 C 0.094 3.906 13 C -0.093 4.093 14 C -0.175 4.175 15 C -0.153 4.153 16 H 0.096 0.904 17 C -0.084 4.084 18 C -0.117 4.117 19 C -0.123 4.123 20 C -0.070 4.070 21 C -0.211 4.211 22 C -0.203 4.203 23 H 0.259 0.741 24 H 0.016 0.984 25 H 0.085 0.915 26 H 0.354 0.646 27 H 0.055 0.945 28 H 0.020 0.980 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.060 -2.632 10.907 11.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.507 4.507 8 H 0.076 0.924 9 C 0.057 3.943 10 C -0.029 4.029 11 N -0.301 5.301 12 C -0.036 4.036 13 C -0.093 4.093 14 C -0.212 4.212 15 C -0.172 4.172 16 H 0.114 0.886 17 C -0.122 4.122 18 C -0.155 4.155 19 C -0.161 4.161 20 C -0.107 4.107 21 C -0.249 4.249 22 C -0.240 4.240 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.103 0.897 26 H 0.174 0.826 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.980 -3.106 11.130 12.222 hybrid contribution -0.062 1.648 -0.586 1.750 sum -4.042 -1.459 10.544 11.386 Atomic orbital electron populations 1.69848 1.05646 1.26230 1.50970 1.24978 0.94905 0.98937 0.94638 0.86583 0.79977 0.83387 0.78129 1.20761 1.21233 1.19799 1.20624 0.92599 0.89027 1.48470 0.92387 1.18969 0.93476 0.89355 0.92510 1.21591 0.97211 0.96879 0.87192 1.60483 1.24162 1.35108 1.10383 1.21443 0.93037 0.98955 0.90131 1.21031 0.97921 0.94355 0.96019 1.23123 1.01155 0.93805 1.03139 1.22278 0.93559 1.06082 0.95246 0.88603 1.20996 0.99638 0.98284 0.93274 1.21549 0.95954 0.98666 0.99314 1.21648 0.96179 1.01391 0.96833 1.20654 0.99121 0.98550 0.92424 1.22972 1.01478 1.07537 0.92949 1.22795 0.97790 1.00673 1.02774 0.93091 0.96594 0.89750 0.82628 0.92640 0.96219 0.88933 0.89296 0.92211 0.92123 0.91821 0.92581 0.92247 0.92179 0.90674 0.91910 0.91957 0.90734 0.91149 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.44 9.89 55.43 0.55 -22.90 16 2 C 0.07 1.73 4.73 -17.82 -0.08 1.64 16 3 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.47 -12.56 8.47 -34.44 -0.29 -12.85 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.44 2.14 -155.66 -0.33 1.11 16 10 C 0.10 2.39 4.75 -3.82 -0.02 2.37 16 11 N -0.67 -14.73 6.36 -113.78 -0.72 -15.45 16 12 C 0.09 1.78 5.34 -3.82 -0.02 1.76 16 13 C -0.09 -1.49 2.11 -155.86 -0.33 -1.82 16 14 C -0.18 -2.79 9.17 -26.79 -0.25 -3.04 16 15 C -0.15 -2.17 5.77 -90.93 -0.52 -2.70 16 16 H 0.10 1.37 8.10 -51.93 -0.42 0.95 16 17 C -0.08 -0.99 5.84 -26.94 -0.16 -1.15 16 18 C -0.12 -1.32 5.93 -26.64 -0.16 -1.48 16 19 C -0.12 -1.52 5.70 -26.65 -0.15 -1.67 16 20 C -0.07 -1.05 5.39 -27.27 -0.15 -1.19 16 21 C -0.21 -4.88 9.96 -26.69 -0.27 -5.15 16 22 C -0.20 -4.61 9.94 -26.69 -0.27 -4.87 16 23 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 24 H 0.02 0.36 8.09 -51.93 -0.42 -0.06 16 25 H 0.08 2.22 5.72 -51.93 -0.30 1.92 16 26 H 0.35 8.50 6.93 -39.29 -0.27 8.23 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.02 0.40 7.98 -51.93 -0.41 -0.02 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.09 1.33 7.27 -51.93 -0.38 0.95 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.69 8.06 -51.93 -0.42 0.27 16 33 H 0.06 0.73 8.04 -51.93 -0.42 0.31 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.75 7.12 -51.92 -0.37 0.38 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 325.36 15.07 4.90 4.90 Total: -1.00 -25.73 325.36 -10.89 -36.61 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -7.60 Total: 10.27 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: -2.99 Total: -29.03 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: -0.18 Total: -38.35 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -25.73 -10.89 -36.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693572026.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.023 kcal (2) G-P(sol) polarization free energy of solvation -25.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds