Wall clock time and date at job start Mon Mar 30 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99752 * 2 1 4 4 H 1.48500 * 109.46996 * 270.00098 * 3 2 1 5 5 H 1.48502 * 109.47007 * 30.00025 * 3 2 1 6 6 H 1.48491 * 109.46878 * 150.00138 * 3 2 1 7 7 C 1.37869 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00121 * 183.23906 * 7 2 1 9 9 C 1.50707 * 120.00059 * 3.23545 * 7 2 1 10 10 C 1.53001 * 115.54720 * 324.02889 * 9 7 2 11 11 N 1.46898 * 109.47165 * 302.85593 * 10 9 7 12 12 C 1.46900 * 110.99936 * 185.17726 * 11 10 9 13 13 C 1.53005 * 109.46752 * 184.68696 * 12 11 10 14 14 C 1.52235 * 115.23947 * 80.05182 * 13 12 11 15 15 C 1.52023 * 115.88418 * 148.12944 * 13 12 11 16 16 H 1.09002 * 116.56227 * 1.72144 * 15 13 12 17 17 C 1.52712 * 120.51212 * 150.04721 * 15 13 12 18 18 C 1.52877 * 110.14852 * 338.49925 * 17 15 13 19 19 C 1.53294 * 108.58542 * 54.52001 * 18 17 15 20 20 C 1.52075 * 114.63883 * 294.73899 * 13 12 11 21 21 C 1.52996 * 117.49587 * 109.69394 * 9 7 2 22 22 C 1.52998 * 117.50097 * 178.35613 * 9 7 2 23 23 H 0.96996 * 120.00133 * 5.00549 * 1 2 3 24 24 H 1.08998 * 109.46770 * 182.85655 * 10 9 7 25 25 H 1.08996 * 109.47423 * 62.86093 * 10 9 7 26 26 H 1.00902 * 110.99897 * 61.22167 * 11 10 9 27 27 H 1.08997 * 109.47032 * 64.69422 * 12 11 10 28 28 H 1.08998 * 109.47299 * 304.68839 * 12 11 10 29 29 H 1.09010 * 117.55484 * 359.40991 * 14 13 12 30 30 H 1.09003 * 117.58106 * 214.13964 * 14 13 12 31 31 H 1.09003 * 109.35641 * 218.29249 * 17 15 13 32 32 H 1.08994 * 109.35877 * 98.70654 * 17 15 13 33 33 H 1.09001 * 109.62289 * 294.79178 * 18 17 15 34 34 H 1.09000 * 109.61755 * 174.25184 * 18 17 15 35 35 H 1.09001 * 109.62283 * 165.81923 * 19 18 17 36 36 H 1.09012 * 109.76435 * 45.37571 * 19 18 17 37 37 H 1.08990 * 109.26689 * 72.88755 * 20 13 12 38 38 H 1.08997 * 109.26686 * 313.38152 * 20 13 12 39 39 H 1.09005 * 117.49643 * 215.00148 * 21 9 7 40 40 H 1.08998 * 117.50211 * 0.02902 * 21 9 7 41 41 H 1.09004 * 117.49397 * 359.97438 * 22 9 7 42 42 H 1.08999 * 117.49802 * 144.97144 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0832 -1.1947 0.0523 9 6 1.2529 -2.4981 -0.0748 10 6 -0.0826 -2.5333 0.6710 11 7 0.1372 -2.2011 2.0849 12 6 -1.1034 -2.3445 2.8584 13 6 -0.8644 -1.8795 4.2963 14 6 -0.8989 -0.3720 4.5053 15 6 -2.0581 -1.2519 4.9980 16 1 -2.9894 -1.2110 4.4330 17 6 -2.2156 -1.3666 6.5126 18 6 -1.4052 -2.5516 7.0381 19 6 0.0469 -2.3953 6.5723 20 6 0.1199 -2.7312 5.0828 21 6 1.3589 -3.3015 -1.3725 22 6 2.0764 -3.7871 -0.1105 23 1 -0.4850 0.8368 -0.0733 24 1 -0.5148 -3.5310 0.5951 25 1 -0.7648 -1.8073 0.2289 26 1 0.5193 -1.2724 2.1830 27 1 -1.4111 -3.3901 2.8611 28 1 -1.8864 -1.7365 2.4053 29 1 -1.0778 0.2543 3.6312 30 1 -0.2309 0.0488 5.2569 31 1 -3.2680 -1.5121 6.7564 32 1 -1.8613 -0.4495 6.9831 33 1 -1.8178 -3.4805 6.6445 34 1 -1.4407 -2.5649 8.1274 35 1 0.6865 -3.0770 7.1330 36 1 0.3770 -1.3688 6.7326 37 1 1.1299 -2.5409 4.7201 38 1 -0.1213 -3.7845 4.9394 39 1 0.4771 -3.8554 -1.6949 40 1 1.9726 -2.8872 -2.1723 41 1 3.1619 -3.6918 -0.0807 42 1 1.6669 -4.6601 0.3977 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693572026.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:26 Heat of formation + Delta-G solvation = 17.663470 kcal Electronic energy + Delta-G solvation = -19004.839231 eV Core-core repulsion = 16370.728262 eV Total energy + Delta-G solvation = -2634.110969 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81607 -38.68213 -35.65550 -34.18559 -33.58298 -31.58050 -28.05931 -27.31036 -25.52723 -24.40810 -22.87237 -22.60066 -21.40570 -20.87321 -19.03432 -18.11099 -17.08946 -16.62128 -15.74548 -15.56174 -15.26601 -15.07128 -14.97194 -14.69157 -14.41819 -14.04091 -13.60806 -13.24924 -13.09591 -12.87916 -12.77612 -12.69752 -12.43932 -12.22511 -12.04178 -11.95371 -11.72846 -11.61681 -11.31735 -11.05119 -10.85249 -10.61206 -10.51439 -10.32940 -10.03151 -8.90007 -7.88767 -6.15880 1.40343 1.43857 1.52097 2.42172 2.78995 3.04287 3.54323 3.73595 3.81196 3.92130 4.00963 4.16946 4.26415 4.35482 4.41928 4.43589 4.62297 4.66983 4.70455 4.77343 4.85891 4.90310 4.93243 4.97518 5.00276 5.06308 5.10188 5.17422 5.17858 5.29441 5.31052 5.39856 5.43216 5.46471 5.56905 5.57590 5.59859 5.63523 6.06075 6.46639 6.63429 6.81952 7.00488 7.46712 8.92752 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.021909 B = 0.006730 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.680231 B = 4159.596680 C = 4824.513771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.032 3.968 3 Si 0.946 3.054 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.490 4.490 8 H 0.046 0.954 9 C 0.026 3.974 10 C 0.111 3.889 11 N -0.667 5.667 12 C 0.097 3.903 13 C -0.102 4.102 14 C -0.185 4.185 15 C -0.131 4.131 16 H 0.093 0.907 17 C -0.083 4.083 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.067 4.067 21 C -0.206 4.206 22 C -0.187 4.187 23 H 0.257 0.743 24 H 0.021 0.979 25 H 0.059 0.941 26 H 0.340 0.660 27 H 0.061 0.939 28 H 0.002 0.998 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.330 -2.951 12.638 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.167 4.167 3 Si 0.773 3.227 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.527 4.527 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.019 4.019 11 N -0.297 5.297 12 C -0.032 4.032 13 C -0.103 4.103 14 C -0.222 4.222 15 C -0.150 4.150 16 H 0.111 0.889 17 C -0.120 4.120 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.104 4.104 21 C -0.245 4.245 22 C -0.224 4.224 23 H 0.067 0.933 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.159 0.841 27 H 0.079 0.921 28 H 0.021 0.979 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.253 -3.441 12.861 13.976 hybrid contribution 0.008 1.719 -1.165 2.077 sum -4.245 -1.722 11.696 12.561 Atomic orbital electron populations 1.69986 1.06399 1.26576 1.50943 1.25518 0.95591 1.01271 0.94307 0.85731 0.78874 0.80195 0.77940 1.20631 1.20963 1.19713 1.20748 0.92177 0.90386 1.49415 0.93593 1.19132 0.94393 0.89767 0.94193 1.21377 0.96248 0.96244 0.88008 1.60492 1.25660 1.33947 1.09624 1.21463 0.91245 0.98980 0.91547 1.20989 0.99970 0.94542 0.94768 1.23065 1.03019 0.93373 1.02744 1.22385 0.92376 1.03105 0.97124 0.88881 1.21056 1.01077 0.99091 0.90817 1.21542 0.94620 0.98179 1.00747 1.21625 0.97605 1.01658 0.94714 1.20609 0.97299 0.98191 0.94305 1.22973 1.01952 1.07015 0.92558 1.22776 0.97695 0.99848 1.02106 0.93281 0.96035 0.92365 0.84145 0.92109 0.97948 0.91591 0.88230 0.90385 0.91290 0.91947 0.90181 0.90752 0.92315 0.92942 0.91963 0.90636 0.91106 0.91000 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.40 9.89 21.45 0.21 -48.19 16 2 C 0.03 1.71 4.73 84.65 0.40 2.11 16 3 Si 0.95 42.69 29.54 68.60 2.03 44.72 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.49 -26.51 8.47 25.60 0.22 -26.29 16 8 H 0.05 2.53 7.81 -2.91 -0.02 2.51 16 9 C 0.03 1.29 2.14 -52.93 -0.11 1.18 16 10 C 0.11 5.36 4.75 86.30 0.41 5.77 16 11 N -0.67 -29.91 6.36 -513.89 -3.27 -33.18 16 12 C 0.10 3.73 5.34 86.30 0.46 4.19 16 13 C -0.10 -3.26 2.11 -53.06 -0.11 -3.37 16 14 C -0.18 -5.88 9.17 30.56 0.28 -5.60 16 15 C -0.13 -3.55 5.77 -10.99 -0.06 -3.61 16 16 H 0.09 2.57 8.10 -2.39 -0.02 2.55 16 17 C -0.08 -1.69 5.84 30.46 0.18 -1.52 16 18 C -0.11 -2.16 5.93 30.65 0.18 -1.98 16 19 C -0.12 -2.63 5.70 30.65 0.17 -2.46 16 20 C -0.07 -1.93 5.39 30.25 0.16 -1.77 16 21 C -0.21 -9.45 9.96 30.62 0.30 -9.14 16 22 C -0.19 -8.33 9.94 30.62 0.30 -8.03 16 23 H 0.26 13.43 8.32 -92.71 -0.77 12.66 16 24 H 0.02 0.99 8.09 -2.39 -0.02 0.97 16 25 H 0.06 3.15 5.72 -2.39 -0.01 3.13 16 26 H 0.34 16.84 6.93 -89.69 -0.62 16.22 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.00 0.10 7.98 -2.39 -0.02 0.08 16 29 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.10 2.91 7.27 -2.39 -0.02 2.90 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.34 8.06 -2.39 -0.02 1.32 16 33 H 0.06 1.23 8.04 -2.39 -0.02 1.21 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.33 7.12 -2.38 -0.02 1.31 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 40 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 42 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -54.68 325.36 2.10 -52.58 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: 0.35 Total: 34.59 kcal Atomic # 6 Polarization: -53.30 SS G_CDS: 2.79 Total: -50.51 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -3.06 Total: -81.37 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -54.68 2.10 -52.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693572026.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.241 kcal (2) G-P(sol) polarization free energy of solvation -54.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds