Wall clock time and date at job start Mon Mar 30 2020 06:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00313 * 2 1 4 4 H 1.48493 * 109.47054 * 180.27016 * 3 2 1 5 5 H 1.48500 * 109.46855 * 300.27322 * 3 2 1 6 6 H 1.48498 * 109.47008 * 60.27000 * 3 2 1 7 7 C 1.37877 * 119.99738 * 180.26818 * 2 1 3 8 8 H 1.07997 * 120.00206 * 174.86020 * 7 2 1 9 9 C 1.50706 * 119.99833 * 354.86298 * 7 2 1 10 10 C 1.53002 * 115.54504 * 275.19798 * 9 7 2 11 11 N 1.46896 * 109.47230 * 294.80068 * 10 9 7 12 12 C 1.46903 * 110.99843 * 185.37832 * 11 10 9 13 13 C 1.52995 * 109.47057 * 180.02562 * 12 11 10 14 14 H 1.08993 * 109.26584 * 55.00445 * 13 12 11 15 15 C 1.52880 * 109.26860 * 295.49669 * 13 12 11 16 16 C 1.50788 * 109.73714 * 185.90805 * 15 13 12 17 17 C 1.52876 * 109.68886 * 72.83850 * 16 15 13 18 18 C 1.52707 * 110.15222 * 306.57203 * 17 16 15 19 19 H 1.09007 * 115.38736 * 231.21081 * 18 17 16 20 20 C 1.53652 * 115.15262 * 89.81360 * 18 17 16 21 21 C 1.52063 * 120.52685 * 21.46957 * 18 17 16 22 22 H 1.09003 * 115.93392 * 208.89074 * 21 18 17 23 23 C 1.52996 * 117.49849 * 129.53318 * 9 7 2 24 24 C 1.53001 * 117.50129 * 60.86991 * 9 7 2 25 25 H 0.97003 * 119.99381 * 4.73075 * 1 2 3 26 26 H 1.08996 * 109.46987 * 54.81089 * 10 9 7 27 27 H 1.09005 * 109.46607 * 174.80535 * 10 9 7 28 28 H 1.00904 * 110.99808 * 61.43287 * 11 10 9 29 29 H 1.08997 * 109.47175 * 300.00796 * 12 11 10 30 30 H 1.09002 * 109.46883 * 60.00518 * 12 11 10 31 31 H 1.08994 * 109.61581 * 304.57834 * 15 13 12 32 32 H 1.08994 * 109.61133 * 65.11499 * 15 13 12 33 33 H 1.09002 * 108.17294 * 313.31457 * 16 15 13 34 34 H 1.09004 * 110.09924 * 193.54710 * 16 15 13 35 35 H 1.08994 * 109.35752 * 186.36020 * 17 16 15 36 36 H 1.09005 * 109.24122 * 66.70918 * 17 16 15 37 37 H 1.08996 * 117.54323 * 140.54708 * 20 18 17 38 38 H 1.09006 * 117.53377 * 355.30022 * 20 18 17 39 39 H 1.09002 * 117.50225 * 359.97438 * 23 9 7 40 40 H 1.09003 * 117.49975 * 145.01978 * 23 9 7 41 41 H 1.08998 * 117.49946 * 214.97825 * 24 9 7 42 42 H 1.08997 * 117.49646 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0066 5 1 1.8855 2.3992 -1.2092 6 1 1.8955 2.3935 1.2158 7 6 2.0045 -1.1941 -0.0056 8 1 3.0812 -1.1956 -0.0894 9 6 1.2554 -2.4971 0.1052 10 6 0.9260 -2.9497 1.5291 11 7 2.1717 -3.2426 2.2504 12 6 1.8914 -3.8018 3.5796 13 6 3.2100 -4.0926 4.2989 14 1 3.8129 -3.1850 4.3255 15 6 3.9695 -5.1808 3.5398 16 6 5.1999 -5.5786 4.3155 17 6 4.7939 -6.3989 5.5400 18 6 3.7536 -5.6396 6.3606 19 1 3.9763 -5.5430 7.4233 20 6 2.2917 -5.9084 5.9714 21 6 2.9169 -4.5422 5.7218 22 1 2.5824 -3.7481 6.3894 23 6 1.5697 -3.5825 -0.9263 24 6 0.2414 -2.8246 -0.9927 25 1 -0.4849 0.8373 -0.0693 26 1 0.3843 -2.1576 2.0460 27 1 0.3085 -3.8472 1.4912 28 1 2.7516 -2.4197 2.3193 29 1 1.3114 -3.0848 4.1605 30 1 1.3240 -4.7263 3.4725 31 1 3.3363 -6.0613 3.4316 32 1 4.2552 -4.8090 2.5559 33 1 5.7083 -4.6693 4.6363 34 1 5.8661 -6.1675 3.6850 35 1 5.6729 -6.5873 6.1563 36 1 4.3721 -7.3491 5.2121 37 1 1.5623 -5.9893 6.7772 38 1 2.1097 -6.5451 5.1054 39 1 2.3179 -3.3541 -1.6853 40 1 1.5413 -4.6191 -0.5906 41 1 -0.6603 -3.3629 -0.7007 42 1 0.1157 -2.0974 -1.7949 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694621385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:14 Heat of formation + Delta-G solvation = 25.178102 kcal Electronic energy + Delta-G solvation = -18561.992150 eV Core-core repulsion = 15928.207040 eV Total energy + Delta-G solvation = -2633.785110 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.76686 -36.87938 -34.62539 -32.93404 -31.86901 -30.75125 -26.41468 -25.37114 -24.05050 -22.34240 -22.32776 -20.87923 -20.29846 -19.03974 -18.16997 -16.35656 -15.84683 -14.95627 -14.61183 -14.36370 -14.20469 -13.80505 -13.66894 -13.31403 -12.97505 -12.59556 -12.18262 -12.00311 -11.55747 -11.28562 -11.22228 -11.16179 -10.94788 -10.84894 -10.72291 -10.41560 -10.40253 -10.08233 -10.02566 -9.67488 -9.62756 -9.21951 -8.79637 -8.35286 -7.99773 -7.42217 -5.98351 -4.05329 3.28246 3.37289 3.41216 3.74960 4.42227 4.59198 4.73395 4.84829 4.99674 5.17270 5.22759 5.29762 5.33256 5.42692 5.51969 5.64686 5.75811 5.77959 5.83254 5.93309 5.96023 6.01837 6.16776 6.17812 6.23384 6.31877 6.34742 6.47399 6.53972 6.61475 6.65912 6.68381 6.89342 6.92024 6.98008 7.25685 7.56466 7.66433 7.92060 8.06080 8.33871 8.54782 8.98669 9.60215 11.08889 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.026702 B = 0.005092 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.348348 B = 5497.529801 C = 5809.443116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.489 4.489 8 H 0.060 0.940 9 C 0.046 3.954 10 C 0.107 3.893 11 N -0.679 5.679 12 C 0.067 3.933 13 C -0.051 4.051 14 H 0.072 0.928 15 C -0.105 4.105 16 C -0.121 4.121 17 C -0.087 4.087 18 C -0.149 4.149 19 H 0.097 0.903 20 C -0.184 4.184 21 C -0.129 4.129 22 H 0.094 0.906 23 C -0.200 4.200 24 C -0.157 4.157 25 H 0.258 0.742 26 H 0.028 0.972 27 H 0.037 0.963 28 H 0.345 0.655 29 H 0.018 0.982 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.992 -10.067 10.685 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.527 4.527 8 H 0.078 0.922 9 C 0.046 3.954 10 C -0.022 4.022 11 N -0.310 5.310 12 C -0.063 4.063 13 C -0.070 4.070 14 H 0.090 0.910 15 C -0.143 4.143 16 C -0.159 4.159 17 C -0.125 4.125 18 C -0.167 4.167 19 H 0.115 0.885 20 C -0.221 4.221 21 C -0.148 4.148 22 H 0.112 0.888 23 C -0.238 4.238 24 C -0.195 4.195 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.164 0.836 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.898 -10.554 10.454 15.983 hybrid contribution -0.138 1.790 0.544 1.877 sum 5.760 -8.764 10.998 15.197 Atomic orbital electron populations 1.70026 1.05838 1.26313 1.49600 1.25012 0.94781 0.98806 0.94839 0.86636 0.80359 0.84118 0.77513 1.19650 1.21134 1.21149 1.20510 0.92858 0.88765 1.50602 0.92180 1.18761 0.97797 0.92739 0.86132 1.21416 0.89125 0.96331 0.95295 1.60430 1.18752 1.36574 1.15236 1.21884 0.95243 0.98964 0.90196 1.20427 0.96794 0.98688 0.91083 0.90997 1.21051 0.95822 0.97944 0.99463 1.21162 0.98419 0.99779 0.96529 1.21037 0.97305 0.97890 0.96232 1.22207 0.92613 1.02760 0.99151 0.88496 1.23106 0.95637 1.00278 1.03067 1.21817 1.03011 0.92217 0.97724 0.88827 1.22857 0.99730 0.95879 1.05312 1.22494 0.90818 1.01786 1.04392 0.93244 0.95342 0.94459 0.83649 0.96340 0.92003 0.92685 0.90056 0.92203 0.92109 0.92134 0.91944 0.89474 0.88664 0.91009 0.91823 0.92441 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.93 12.65 55.43 0.70 -24.23 16 2 C 0.07 1.85 5.43 -17.82 -0.10 1.76 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.49 -13.13 8.33 -34.44 -0.29 -13.42 16 8 H 0.06 1.63 7.82 -52.49 -0.41 1.21 16 9 C 0.05 1.15 1.65 -155.66 -0.26 0.89 16 10 C 0.11 2.41 5.54 -3.82 -0.02 2.39 16 11 N -0.68 -13.13 5.98 -113.78 -0.68 -13.81 16 12 C 0.07 1.08 4.99 -3.82 -0.02 1.06 16 13 C -0.05 -0.70 2.41 -91.15 -0.22 -0.92 16 14 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 15 C -0.11 -1.39 4.68 -27.90 -0.13 -1.52 16 16 C -0.12 -1.36 5.82 -27.90 -0.16 -1.52 16 17 C -0.09 -0.88 5.83 -26.95 -0.16 -1.04 16 18 C -0.15 -1.58 6.24 -90.91 -0.57 -2.15 16 19 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 20 C -0.18 -2.03 9.55 -26.75 -0.26 -2.28 16 21 C -0.13 -1.55 5.30 -91.92 -0.49 -2.04 16 22 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 23 C -0.20 -4.55 9.96 -26.69 -0.27 -4.82 16 24 C -0.16 -3.80 9.14 -26.69 -0.24 -4.05 16 25 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.81 8.08 -51.93 -0.42 0.39 16 28 H 0.35 6.99 8.31 -39.29 -0.33 6.66 16 29 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.74 7.08 -51.93 -0.37 0.37 16 32 H 0.08 1.21 7.87 -51.93 -0.41 0.81 16 33 H 0.06 0.68 8.02 -51.93 -0.42 0.27 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.62 8.03 -51.93 -0.42 0.20 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.10 7.26 -51.93 -0.38 0.72 16 39 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.08 2.12 8.14 -51.93 -0.42 1.69 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -27.15 331.00 -10.96 -38.11 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.77 Total: 6.67 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -3.17 Total: -27.66 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.02 Total: -38.04 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.15 -10.96 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694621385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.283 kcal (2) G-P(sol) polarization free energy of solvation -27.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds