Wall clock time and date at job start Mon Mar 30 2020 06:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00313 * 2 1 4 4 H 1.48493 * 109.47054 * 180.27016 * 3 2 1 5 5 H 1.48500 * 109.46855 * 300.27322 * 3 2 1 6 6 H 1.48498 * 109.47008 * 60.27000 * 3 2 1 7 7 C 1.37877 * 119.99738 * 180.26818 * 2 1 3 8 8 H 1.07997 * 120.00206 * 174.86020 * 7 2 1 9 9 C 1.50706 * 119.99833 * 354.86298 * 7 2 1 10 10 C 1.53002 * 115.54504 * 275.19798 * 9 7 2 11 11 N 1.46896 * 109.47230 * 294.80068 * 10 9 7 12 12 C 1.46903 * 110.99843 * 185.37832 * 11 10 9 13 13 C 1.52995 * 109.47057 * 180.02562 * 12 11 10 14 14 H 1.08993 * 109.26584 * 55.00445 * 13 12 11 15 15 C 1.52880 * 109.26860 * 295.49669 * 13 12 11 16 16 C 1.50788 * 109.73714 * 185.90805 * 15 13 12 17 17 C 1.52876 * 109.68886 * 72.83850 * 16 15 13 18 18 C 1.52707 * 110.15222 * 306.57203 * 17 16 15 19 19 H 1.09007 * 115.38736 * 231.21081 * 18 17 16 20 20 C 1.53652 * 115.15262 * 89.81360 * 18 17 16 21 21 C 1.52063 * 120.52685 * 21.46957 * 18 17 16 22 22 H 1.09003 * 115.93392 * 208.89074 * 21 18 17 23 23 C 1.52996 * 117.49849 * 129.53318 * 9 7 2 24 24 C 1.53001 * 117.50129 * 60.86991 * 9 7 2 25 25 H 0.97003 * 119.99381 * 4.73075 * 1 2 3 26 26 H 1.08996 * 109.46987 * 54.81089 * 10 9 7 27 27 H 1.09005 * 109.46607 * 174.80535 * 10 9 7 28 28 H 1.00904 * 110.99808 * 61.43287 * 11 10 9 29 29 H 1.08997 * 109.47175 * 300.00796 * 12 11 10 30 30 H 1.09002 * 109.46883 * 60.00518 * 12 11 10 31 31 H 1.08994 * 109.61581 * 304.57834 * 15 13 12 32 32 H 1.08994 * 109.61133 * 65.11499 * 15 13 12 33 33 H 1.09002 * 108.17294 * 313.31457 * 16 15 13 34 34 H 1.09004 * 110.09924 * 193.54710 * 16 15 13 35 35 H 1.08994 * 109.35752 * 186.36020 * 17 16 15 36 36 H 1.09005 * 109.24122 * 66.70918 * 17 16 15 37 37 H 1.08996 * 117.54323 * 140.54708 * 20 18 17 38 38 H 1.09006 * 117.53377 * 355.30022 * 20 18 17 39 39 H 1.09002 * 117.50225 * 359.97438 * 23 9 7 40 40 H 1.09003 * 117.49975 * 145.01978 * 23 9 7 41 41 H 1.08998 * 117.49946 * 214.97825 * 24 9 7 42 42 H 1.08997 * 117.49646 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0066 5 1 1.8855 2.3992 -1.2092 6 1 1.8955 2.3935 1.2158 7 6 2.0045 -1.1941 -0.0056 8 1 3.0812 -1.1956 -0.0894 9 6 1.2554 -2.4971 0.1052 10 6 0.9260 -2.9497 1.5291 11 7 2.1717 -3.2426 2.2504 12 6 1.8914 -3.8018 3.5796 13 6 3.2100 -4.0926 4.2989 14 1 3.8129 -3.1850 4.3255 15 6 3.9695 -5.1808 3.5398 16 6 5.1999 -5.5786 4.3155 17 6 4.7939 -6.3989 5.5400 18 6 3.7536 -5.6396 6.3606 19 1 3.9763 -5.5430 7.4233 20 6 2.2917 -5.9084 5.9714 21 6 2.9169 -4.5422 5.7218 22 1 2.5824 -3.7481 6.3894 23 6 1.5697 -3.5825 -0.9263 24 6 0.2414 -2.8246 -0.9927 25 1 -0.4849 0.8373 -0.0693 26 1 0.3843 -2.1576 2.0460 27 1 0.3085 -3.8472 1.4912 28 1 2.7516 -2.4197 2.3193 29 1 1.3114 -3.0848 4.1605 30 1 1.3240 -4.7263 3.4725 31 1 3.3363 -6.0613 3.4316 32 1 4.2552 -4.8090 2.5559 33 1 5.7083 -4.6693 4.6363 34 1 5.8661 -6.1675 3.6850 35 1 5.6729 -6.5873 6.1563 36 1 4.3721 -7.3491 5.2121 37 1 1.5623 -5.9893 6.7772 38 1 2.1097 -6.5451 5.1054 39 1 2.3179 -3.3541 -1.6853 40 1 1.5413 -4.6191 -0.5906 41 1 -0.6603 -3.3629 -0.7007 42 1 0.1157 -2.0974 -1.7949 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694621385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:14 Heat of formation + Delta-G solvation = 12.255217 kcal Electronic energy + Delta-G solvation = -18562.552528 eV Core-core repulsion = 15928.207040 eV Total energy + Delta-G solvation = -2634.345489 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.74127 -38.70162 -36.10711 -33.97043 -33.86352 -31.98333 -27.98234 -27.13186 -25.42798 -23.61672 -23.28075 -22.75970 -21.37761 -20.89420 -19.21190 -17.90584 -17.24381 -16.63447 -16.36277 -15.79879 -15.54140 -15.22124 -14.87400 -14.43503 -14.31790 -14.08629 -13.55552 -13.24339 -13.21848 -12.89684 -12.85917 -12.63267 -12.54034 -12.27977 -12.12208 -11.95756 -11.72169 -11.47058 -11.22002 -11.04764 -10.81280 -10.58643 -10.52220 -10.34292 -9.90132 -9.07508 -8.06796 -6.19010 1.39509 1.43184 1.53607 2.43600 2.84342 3.20509 3.32776 3.69056 3.79010 3.90379 3.99279 4.16723 4.26741 4.35203 4.37518 4.46247 4.54055 4.60995 4.70194 4.72335 4.78962 4.89228 4.93681 4.95769 4.99461 5.03223 5.05873 5.09940 5.15015 5.27325 5.31862 5.35700 5.43183 5.48911 5.59337 5.61411 5.66764 5.72207 5.82885 6.38027 6.49748 6.67252 6.90925 7.49201 9.00185 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.026702 B = 0.005092 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.348348 B = 5497.529801 C = 5809.443116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.498 4.498 8 H 0.053 0.947 9 C 0.022 3.978 10 C 0.122 3.878 11 N -0.674 5.674 12 C 0.071 3.929 13 C -0.044 4.044 14 H 0.064 0.936 15 C -0.101 4.101 16 C -0.118 4.118 17 C -0.087 4.087 18 C -0.138 4.138 19 H 0.113 0.887 20 C -0.182 4.182 21 C -0.144 4.144 22 H 0.095 0.905 23 C -0.177 4.177 24 C -0.163 4.163 25 H 0.257 0.743 26 H -0.003 1.003 27 H 0.045 0.955 28 H 0.339 0.661 29 H 0.011 0.989 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.218 -11.092 11.889 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.177 4.177 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.022 3.978 10 C -0.008 4.008 11 N -0.304 5.304 12 C -0.059 4.059 13 C -0.063 4.063 14 H 0.082 0.918 15 C -0.138 4.138 16 C -0.156 4.156 17 C -0.124 4.124 18 C -0.156 4.156 19 H 0.131 0.869 20 C -0.219 4.219 21 C -0.163 4.163 22 H 0.113 0.887 23 C -0.214 4.214 24 C -0.201 4.201 25 H 0.066 0.934 26 H 0.015 0.985 27 H 0.064 0.936 28 H 0.156 0.844 29 H 0.029 0.971 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.139 -11.594 11.661 17.926 hybrid contribution -0.525 2.073 0.154 2.144 sum 6.613 -9.521 11.815 16.553 Atomic orbital electron populations 1.70134 1.07105 1.26956 1.50668 1.25676 0.95494 1.01826 0.94686 0.85671 0.79397 0.80267 0.77311 1.18966 1.21033 1.20983 1.20719 0.92675 0.90043 1.50202 0.92878 1.18935 0.98316 0.93053 0.87521 1.21148 0.90053 0.95407 0.94155 1.60424 1.17082 1.35873 1.17011 1.21936 0.96862 0.98389 0.88674 1.20318 0.95103 0.98710 0.92127 0.91770 1.20975 0.96737 0.97446 0.98691 1.21134 0.97404 1.00069 0.96980 1.21067 0.97907 0.97621 0.95799 1.22323 0.92378 1.01026 0.99891 0.86934 1.23149 0.96511 0.99028 1.03232 1.21745 1.04986 0.92993 0.96585 0.88700 1.22825 0.98311 0.96343 1.03957 1.22394 0.91954 1.01976 1.03758 0.93351 0.98510 0.93633 0.84377 0.97100 0.91799 0.92911 0.92141 0.92444 0.91190 0.90351 0.91542 0.88359 0.89218 0.91080 0.89735 0.91410 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.33 12.65 21.45 0.27 -52.06 16 2 C 0.02 1.25 5.43 84.65 0.46 1.71 16 3 Si 0.95 43.33 29.54 68.60 2.03 45.36 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.50 -26.94 8.33 25.60 0.21 -26.73 16 8 H 0.05 2.88 7.82 -2.91 -0.02 2.86 16 9 C 0.02 1.11 1.65 -52.93 -0.09 1.02 16 10 C 0.12 5.51 5.54 86.30 0.48 5.99 16 11 N -0.67 -26.08 5.98 -513.89 -3.08 -29.15 16 12 C 0.07 2.27 4.99 86.30 0.43 2.70 16 13 C -0.04 -1.16 2.41 -11.14 -0.03 -1.19 16 14 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 15 C -0.10 -2.55 4.68 29.84 0.14 -2.41 16 16 C -0.12 -2.41 5.82 29.83 0.17 -2.24 16 17 C -0.09 -1.50 5.83 30.46 0.18 -1.32 16 18 C -0.14 -2.55 6.24 -10.98 -0.07 -2.62 16 19 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 20 C -0.18 -3.63 9.55 30.58 0.29 -3.34 16 21 C -0.14 -3.23 5.30 -11.64 -0.06 -3.29 16 22 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 23 C -0.18 -7.88 9.96 30.62 0.30 -7.58 16 24 C -0.16 -7.92 9.14 30.62 0.28 -7.64 16 25 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 26 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 27 H 0.05 1.95 8.08 -2.38 -0.02 1.93 16 28 H 0.34 13.87 8.31 -89.69 -0.74 13.13 16 29 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.35 7.08 -2.39 -0.02 1.33 16 32 H 0.06 1.77 7.87 -2.39 -0.02 1.75 16 33 H 0.06 1.20 8.02 -2.39 -0.02 1.18 16 34 H 0.07 1.30 8.14 -2.38 -0.02 1.29 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.13 8.03 -2.38 -0.02 1.11 16 37 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.09 1.90 7.26 -2.38 -0.02 1.88 16 39 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -57.23 331.00 2.15 -55.09 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.22 Total: 27.70 kcal Atomic # 6 Polarization: -49.64 SS G_CDS: 2.71 Total: -46.93 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -2.80 Total: -81.21 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -57.23 2.15 -55.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694621385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.341 kcal (2) G-P(sol) polarization free energy of solvation -57.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds