Wall clock time and date at job start Mon Mar 30 2020 06:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99851 * 2 1 4 4 H 1.48499 * 109.46877 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47283 * 59.99723 * 3 2 1 6 6 H 1.48497 * 109.47119 * 299.99475 * 3 2 1 7 7 C 1.37875 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99425 * 176.99458 * 7 2 1 9 9 C 1.50697 * 120.00469 * 356.99134 * 7 2 1 10 10 C 1.53005 * 115.54991 * 279.55385 * 9 7 2 11 11 N 1.46895 * 109.47174 * 301.97052 * 10 9 7 12 12 C 1.46900 * 111.00032 * 184.10600 * 11 10 9 13 13 C 1.52997 * 109.47181 * 179.97438 * 12 11 10 14 14 H 1.09005 * 109.35602 * 54.72688 * 13 12 11 15 15 C 1.52876 * 109.36101 * 294.99942 * 13 12 11 16 16 C 1.53300 * 108.58316 * 185.26584 * 15 13 12 17 17 C 1.52872 * 108.58686 * 74.44562 * 16 15 13 18 18 C 1.52071 * 110.51405 * 305.10754 * 17 16 15 19 19 H 1.09005 * 114.63965 * 165.62671 * 18 17 16 20 20 C 1.52305 * 119.84169 * 310.45007 * 18 17 16 21 21 C 1.52068 * 120.02238 * 21.70577 * 18 17 16 22 22 H 1.09001 * 117.25577 * 144.43460 * 21 18 17 23 23 C 1.53001 * 117.50067 * 133.84634 * 9 7 2 24 24 C 1.52997 * 117.49948 * 65.22217 * 9 7 2 25 25 H 0.97001 * 120.00403 * 185.85743 * 1 2 3 26 26 H 1.09004 * 109.46596 * 61.96909 * 10 9 7 27 27 H 1.08998 * 109.47167 * 181.96221 * 10 9 7 28 28 H 1.00906 * 110.99989 * 308.05478 * 11 10 9 29 29 H 1.09000 * 109.46934 * 299.99902 * 12 11 10 30 30 H 1.08997 * 109.46980 * 59.99788 * 12 11 10 31 31 H 1.08998 * 109.61711 * 305.00073 * 15 13 12 32 32 H 1.09000 * 109.61561 * 65.35960 * 15 13 12 33 33 H 1.08996 * 109.61715 * 194.17006 * 16 15 13 34 34 H 1.09001 * 109.62103 * 314.53764 * 16 15 13 35 35 H 1.08997 * 109.27309 * 65.37982 * 17 16 15 36 36 H 1.09005 * 109.26917 * 184.84245 * 17 16 15 37 37 H 1.09002 * 117.53471 * 217.19386 * 20 18 17 38 38 H 1.08996 * 117.53572 * 2.44243 * 20 18 17 39 39 H 1.08996 * 117.49581 * 359.97438 * 23 9 7 40 40 H 1.08993 * 117.49669 * 145.02220 * 23 9 7 41 41 H 1.09001 * 117.50166 * 214.97789 * 24 9 7 42 42 H 1.08998 * 117.49763 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 1.2124 6 1 1.8904 2.3964 -1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0834 -1.1947 -0.0485 9 6 1.2525 -2.4982 0.0696 10 6 0.7869 -2.9184 1.4652 11 7 1.9482 -3.0202 2.3589 12 6 1.5513 -3.5159 3.6835 13 6 2.7848 -3.6088 4.5839 14 1 3.2874 -2.6419 4.6090 15 6 3.7413 -4.6629 4.0261 16 6 4.9048 -4.8360 5.0091 17 6 4.4054 -5.6218 6.2216 18 6 3.1904 -4.9423 6.8335 19 1 2.6321 -5.5584 7.5385 20 6 3.2299 -3.4508 7.1392 21 6 2.3515 -3.9876 5.9985 22 1 1.2758 -3.9835 6.1747 23 6 1.6692 -3.6062 -0.8999 24 6 0.3518 -2.8579 -1.1137 25 1 -0.4851 -0.8356 0.0857 26 1 0.0921 -2.1747 1.8555 27 1 0.2880 -3.8857 1.4059 28 1 2.6656 -3.6034 1.9546 29 1 0.8286 -2.8306 4.1263 30 1 1.1009 -4.5032 3.5819 31 1 3.2149 -5.6105 3.9114 32 1 4.1218 -4.3361 3.0584 33 1 5.7137 -5.3838 4.5259 34 1 5.2642 -3.8572 5.3268 35 1 4.1346 -6.6305 5.9099 36 1 5.1996 -5.6772 6.9663 37 1 2.7273 -3.1083 8.0438 38 1 4.1324 -2.9041 6.8659 39 1 2.4868 -3.3915 -1.5879 40 1 1.6117 -4.6346 -0.5435 41 1 -0.5723 -3.3942 -0.8980 42 1 0.3034 -2.1515 -1.9423 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694621522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:17 Heat of formation + Delta-G solvation = 8.019122 kcal Electronic energy + Delta-G solvation = -18592.120454 eV Core-core repulsion = 15957.591275 eV Total energy + Delta-G solvation = -2634.529179 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70639 -39.07624 -36.37966 -33.89260 -33.75130 -32.06341 -27.86877 -26.86065 -25.65461 -23.89043 -23.13989 -22.60956 -21.79930 -21.18107 -19.32427 -18.59007 -17.11215 -16.73618 -15.93218 -15.62607 -15.49104 -15.13823 -15.06541 -14.64081 -14.51241 -14.18564 -13.98184 -13.70635 -13.21577 -12.81320 -12.67415 -12.61024 -12.34498 -12.23257 -12.19139 -11.91730 -11.87457 -11.69694 -11.26238 -11.10093 -10.65676 -10.56683 -10.47518 -10.34626 -10.13039 -9.12695 -8.42634 -6.13363 1.55325 1.64383 1.79886 2.63091 2.86747 3.10646 3.34139 3.44352 3.75528 3.81555 3.85235 4.13395 4.14517 4.22150 4.27219 4.34384 4.41131 4.46239 4.51288 4.54927 4.61608 4.67055 4.74384 4.81089 4.86357 4.89955 4.94370 5.04608 5.07147 5.08560 5.23038 5.26896 5.35664 5.38987 5.43322 5.46501 5.49957 5.53675 6.20523 6.30839 6.40682 6.66383 6.83116 7.64675 8.97582 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024295 B = 0.005349 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.206739 B = 5233.387054 C = 5706.478095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.023 4.023 3 Si 1.112 2.888 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.547 4.547 8 H 0.037 0.963 9 C -0.005 4.005 10 C 0.118 3.882 11 N -0.677 5.677 12 C 0.070 3.930 13 C -0.044 4.044 14 H 0.062 0.938 15 C -0.113 4.113 16 C -0.118 4.118 17 C -0.086 4.086 18 C -0.130 4.130 19 H 0.107 0.893 20 C -0.182 4.182 21 C -0.156 4.156 22 H 0.098 0.902 23 C -0.174 4.174 24 C -0.185 4.185 25 H 0.263 0.737 26 H 0.032 0.968 27 H 0.012 0.988 28 H 0.339 0.661 29 H 0.051 0.949 30 H 0.027 0.973 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.426 -11.754 12.676 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.222 4.222 3 Si 0.937 3.063 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.585 4.585 8 H 0.056 0.944 9 C -0.006 4.006 10 C -0.011 4.011 11 N -0.308 5.308 12 C -0.059 4.059 13 C -0.063 4.063 14 H 0.080 0.920 15 C -0.150 4.150 16 C -0.156 4.156 17 C -0.123 4.123 18 C -0.148 4.148 19 H 0.125 0.875 20 C -0.219 4.219 21 C -0.175 4.175 22 H 0.116 0.884 23 C -0.211 4.211 24 C -0.223 4.223 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.030 0.970 28 H 0.158 0.842 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.212 -9.453 12.788 17.461 hybrid contribution -0.537 -2.234 -0.375 2.328 sum 6.675 -11.686 12.413 18.308 Atomic orbital electron populations 1.70771 1.07605 1.30858 1.48751 1.26847 0.96688 1.05350 0.93297 0.82976 0.74329 0.72206 0.76833 1.20139 1.21300 1.21009 1.21384 0.92987 0.90997 1.53111 0.94431 1.19285 0.99119 0.94684 0.87463 1.21229 0.91542 0.95619 0.92718 1.60176 1.11450 1.56418 1.02787 1.22007 0.97204 0.96905 0.89771 1.20512 0.94895 0.98806 0.92073 0.92009 1.21595 0.96601 0.98310 0.98523 1.21570 0.97338 1.00628 0.96034 1.20865 0.95847 0.98716 0.96866 1.21932 0.99272 0.92284 1.01279 0.87459 1.23159 1.02032 0.96964 0.99717 1.22188 0.97459 1.06094 0.91736 0.88408 1.22859 0.97461 0.96139 1.04648 1.22680 0.93600 1.03326 1.02675 0.92652 0.94917 0.97029 0.84232 0.93021 0.95521 0.91820 0.92549 0.90746 0.92396 0.90860 0.90358 0.88214 0.89087 0.90402 0.88939 0.90239 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.54 13.54 21.45 0.29 -57.25 16 2 C -0.02 -1.35 5.44 84.65 0.46 -0.89 16 3 Si 1.11 52.34 29.90 68.60 2.05 54.39 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.55 -30.68 8.58 25.60 0.22 -30.46 16 8 H 0.04 2.16 7.82 -2.91 -0.02 2.13 16 9 C 0.00 -0.24 1.07 -52.93 -0.06 -0.29 16 10 C 0.12 5.33 5.50 86.31 0.47 5.81 16 11 N -0.68 -27.01 6.29 -513.90 -3.23 -30.25 16 12 C 0.07 2.31 4.99 86.30 0.43 2.74 16 13 C -0.04 -1.21 2.33 -10.93 -0.03 -1.23 16 14 H 0.06 1.94 8.05 -2.38 -0.02 1.92 16 15 C -0.11 -2.70 4.84 30.65 0.15 -2.55 16 16 C -0.12 -2.30 5.70 30.65 0.17 -2.13 16 17 C -0.09 -1.42 5.93 30.25 0.18 -1.24 16 18 C -0.13 -2.38 6.00 -11.64 -0.07 -2.45 16 19 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 20 C -0.18 -3.64 9.66 30.58 0.30 -3.35 16 21 C -0.16 -3.59 5.62 -10.98 -0.06 -3.65 16 22 H 0.10 2.27 7.92 -2.39 -0.02 2.25 16 23 C -0.17 -7.34 9.94 30.60 0.30 -7.03 16 24 C -0.18 -8.61 8.72 30.59 0.27 -8.35 16 25 H 0.26 16.06 6.15 -92.71 -0.57 15.49 16 26 H 0.03 1.67 7.79 -2.38 -0.02 1.65 16 27 H 0.01 0.48 8.10 -2.39 -0.02 0.46 16 28 H 0.34 12.74 7.04 -89.69 -0.63 12.10 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 1.47 8.04 -2.39 -0.02 1.45 16 32 H 0.06 1.49 6.92 -2.39 -0.02 1.47 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.20 7.12 -2.39 -0.02 1.19 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 1.89 7.27 -2.39 -0.02 1.88 16 39 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -62.42 327.15 2.39 -60.04 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.54 Total: 28.14 kcal Atomic # 6 Polarization: -57.82 SS G_CDS: 2.74 Total: -55.07 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.94 Total: -87.50 kcal Atomic # 14 Polarization: 52.34 SS G_CDS: 2.05 Total: 54.39 kcal Total: -62.42 2.39 -60.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694621522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.057 kcal (2) G-P(sol) polarization free energy of solvation -62.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds