Wall clock time and date at job start Mon Mar 30 2020 06:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99475 * 2 1 4 4 H 1.48502 * 109.47039 * 269.99588 * 3 2 1 5 5 H 1.48499 * 109.47200 * 30.00043 * 3 2 1 6 6 H 1.48500 * 109.46811 * 150.00332 * 3 2 1 7 7 C 1.37869 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99967 * 173.36643 * 7 2 1 9 9 C 1.50707 * 119.99959 * 353.36477 * 7 2 1 10 10 C 1.52999 * 115.54686 * 85.27341 * 9 7 2 11 11 N 1.46900 * 109.47228 * 39.57494 * 10 9 7 12 12 C 1.46903 * 111.00008 * 174.71325 * 11 10 9 13 13 C 1.53002 * 109.47094 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.46700 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.81233 * 54.47779 * 14 13 12 16 16 C 1.53023 * 109.64582 * 293.94075 * 14 13 12 17 17 C 1.50067 * 110.14485 * 190.87997 * 16 14 13 18 18 C 1.29171 * 123.99538 * 17.09421 * 17 16 14 19 19 C 1.50066 * 124.28392 * 359.61064 * 18 17 16 20 20 C 1.53021 * 110.03452 * 17.04467 * 19 18 17 21 21 C 1.52992 * 117.51726 * 230.97357 * 9 7 2 22 22 C 1.52998 * 117.49793 * 299.60487 * 9 7 2 23 23 H 0.96997 * 120.00484 * 5.06143 * 1 2 3 24 24 H 1.09001 * 109.46933 * 279.57180 * 10 9 7 25 25 H 1.09002 * 109.47244 * 159.57501 * 10 9 7 26 26 H 1.00896 * 111.00169 * 298.66084 * 11 10 9 27 27 H 1.09000 * 109.47478 * 59.99319 * 12 11 10 28 28 H 1.09005 * 109.46696 * 299.99900 * 12 11 10 29 29 H 1.08997 * 109.47056 * 59.99859 * 13 12 11 30 30 H 1.09001 * 109.46733 * 299.99584 * 13 12 11 31 31 H 1.08996 * 109.35835 * 311.09332 * 16 14 13 32 32 H 1.09006 * 109.35302 * 70.67867 * 16 14 13 33 33 H 1.08005 * 117.96100 * 197.10945 * 17 16 14 34 34 H 1.07998 * 117.75330 * 179.61559 * 18 17 16 35 35 H 1.08996 * 109.35666 * 256.91244 * 19 18 17 36 36 H 1.08999 * 109.35964 * 137.18393 * 19 18 17 37 37 H 1.09003 * 109.64616 * 70.32005 * 20 19 18 38 38 H 1.09007 * 109.64149 * 190.73700 * 20 19 18 39 39 H 1.08999 * 117.49583 * 214.97053 * 21 9 7 40 40 H 1.08996 * 117.50342 * 359.97438 * 21 9 7 41 41 H 1.08997 * 117.50103 * 359.97231 * 22 9 7 42 42 H 1.08999 * 117.49868 * 144.99828 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0792 -1.1971 -0.1075 9 6 1.2587 -2.4947 0.1519 10 6 0.6963 -3.0872 -1.1417 11 7 1.6661 -2.8986 -2.2289 12 6 1.2154 -3.5652 -3.4579 13 6 2.2492 -3.3475 -4.5647 14 6 1.7800 -4.0424 -5.8445 15 1 0.7790 -3.6991 -6.1056 16 6 1.7650 -5.5576 -5.6313 17 6 1.5660 -6.2619 -6.9415 18 6 1.7430 -5.7065 -8.0942 19 6 2.1635 -4.2792 -8.2892 20 6 2.7495 -3.7231 -6.9896 21 6 1.7518 -3.4720 1.2207 22 6 0.4484 -2.6994 1.4335 23 1 -0.4851 0.8367 -0.0741 24 1 -0.2369 -2.5846 -1.3959 25 1 0.5092 -4.1520 -1.0024 26 1 1.8399 -1.9183 -2.3923 27 1 0.2574 -3.1475 -3.7676 28 1 1.1027 -4.6333 -3.2715 29 1 3.2068 -3.7657 -4.2547 30 1 2.3623 -2.2796 -4.7511 31 1 2.7128 -5.8703 -5.1933 32 1 0.9523 -5.8191 -4.9535 33 1 1.2557 -7.2962 -6.9184 34 1 1.5769 -6.3102 -8.9741 35 1 1.2977 -3.6838 -8.5788 36 1 2.9164 -4.2286 -9.0757 37 1 3.7147 -4.1902 -6.7934 38 1 2.8758 -2.6439 -7.0768 39 1 1.6755 -4.5372 1.0023 40 1 2.6161 -3.1746 1.8144 41 1 0.4552 -1.8935 2.1674 42 1 -0.4853 -3.2562 1.3551 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706850153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:53 Heat of formation + Delta-G solvation = 12.366718 kcal Electronic energy + Delta-G solvation = -18118.043114 eV Core-core repulsion = 15483.702460 eV Total energy + Delta-G solvation = -2634.340653 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.89822 -36.91246 -34.88595 -32.20355 -31.87429 -30.83575 -27.92040 -25.49411 -24.30409 -23.24991 -21.56201 -20.94959 -20.45902 -18.93469 -17.94872 -16.13948 -15.80739 -15.08728 -14.57598 -14.45885 -14.11841 -13.83461 -13.61599 -13.33112 -12.98318 -12.56320 -12.40365 -12.11971 -11.96061 -11.71443 -11.31008 -11.10410 -10.94836 -10.89051 -10.70031 -10.45634 -10.40356 -10.10705 -10.06275 -10.00312 -9.33232 -9.05886 -8.74691 -8.39368 -8.01043 -7.29314 -5.98424 -4.02731 2.23623 3.30246 3.38270 3.42607 4.43180 4.60492 4.71901 4.78265 5.11937 5.19277 5.28207 5.30533 5.42977 5.47144 5.54787 5.60572 5.67101 5.73132 5.85875 5.94319 5.98349 6.08629 6.13611 6.20584 6.24721 6.31018 6.47224 6.50608 6.62351 6.64380 6.67351 6.83359 6.87303 6.89716 7.03026 7.19193 7.50536 7.57442 7.93022 8.17328 8.48883 8.59575 9.00333 9.61226 11.09686 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.026237 B = 0.004564 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.919903 B = 6132.888738 C = 6866.782981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.482 4.482 8 H 0.061 0.939 9 C 0.051 3.949 10 C 0.107 3.893 11 N -0.676 5.676 12 C 0.057 3.943 13 C -0.110 4.110 14 C -0.085 4.085 15 H 0.069 0.931 16 C -0.089 4.089 17 C -0.150 4.150 18 C -0.164 4.164 19 C -0.090 4.090 20 C -0.115 4.115 21 C -0.208 4.208 22 C -0.164 4.164 23 H 0.258 0.742 24 H 0.026 0.974 25 H 0.035 0.965 26 H 0.352 0.648 27 H 0.015 0.985 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.235 -8.570 -13.386 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.051 3.949 10 C -0.022 4.022 11 N -0.309 5.309 12 C -0.073 4.073 13 C -0.148 4.148 14 C -0.104 4.104 15 H 0.087 0.913 16 C -0.125 4.125 17 C -0.168 4.168 18 C -0.182 4.182 19 C -0.127 4.127 20 C -0.153 4.153 21 C -0.245 4.245 22 C -0.202 4.202 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.172 0.828 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.465 -8.962 -13.115 16.075 hybrid contribution -0.480 1.397 -0.306 1.508 sum 1.985 -7.566 -13.421 15.534 Atomic orbital electron populations 1.70002 1.05846 1.26487 1.49701 1.25004 0.94757 0.98749 0.94980 0.86679 0.80034 0.83757 0.78084 1.20752 1.21402 1.19829 1.20409 0.93162 0.88539 1.49880 0.92047 1.18788 0.96984 0.93583 0.85575 1.21345 0.92597 0.96265 0.91969 1.60414 1.46106 1.20030 1.04329 1.21943 0.95299 0.99182 0.90849 1.21598 0.99663 1.00314 0.93218 1.21195 0.99353 0.94828 0.95019 0.91264 1.20572 1.02410 0.94550 0.95013 1.22076 1.00355 0.99565 0.94819 1.21945 1.01849 0.96967 0.97413 1.20446 1.00449 0.93754 0.98081 1.21661 0.98833 1.00702 0.94080 1.22984 0.98008 0.95619 1.07897 1.22519 0.92200 1.01302 1.04171 0.93215 0.95556 0.94629 0.82799 0.96649 0.92163 0.91207 0.92094 0.90638 0.90888 0.88313 0.88539 0.91128 0.91435 0.91800 0.91634 0.91933 0.90785 0.90298 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.76 12.93 55.43 0.72 -24.05 16 2 C 0.07 1.82 5.39 -17.82 -0.10 1.72 16 3 Si 0.89 20.91 29.55 -169.99 -5.02 15.88 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.48 -12.91 7.47 -34.44 -0.26 -13.17 16 8 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 9 C 0.05 1.28 1.76 -155.66 -0.27 1.00 16 10 C 0.11 2.45 5.80 -3.82 -0.02 2.43 16 11 N -0.68 -14.02 6.26 -113.77 -0.71 -14.73 16 12 C 0.06 0.96 5.46 -3.82 -0.02 0.94 16 13 C -0.11 -1.55 4.94 -26.73 -0.13 -1.68 16 14 C -0.08 -1.01 2.23 -90.40 -0.20 -1.21 16 15 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 16 C -0.09 -1.00 4.94 -28.18 -0.14 -1.14 16 17 C -0.15 -1.57 9.80 -35.83 -0.35 -1.92 16 18 C -0.16 -1.62 9.78 -35.83 -0.35 -1.97 16 19 C -0.09 -0.86 6.12 -28.18 -0.17 -1.03 16 20 C -0.12 -1.22 5.31 -26.51 -0.14 -1.36 16 21 C -0.21 -4.72 9.88 -26.73 -0.26 -4.98 16 22 C -0.16 -3.95 9.46 -26.73 -0.25 -4.20 16 23 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.76 7.93 -51.93 -0.41 0.35 16 26 H 0.35 7.85 7.71 -39.29 -0.30 7.54 16 27 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.97 6.86 -51.93 -0.36 0.61 16 29 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 32 H 0.07 0.84 7.15 -51.93 -0.37 0.47 16 33 H 0.10 0.92 8.06 -52.48 -0.42 0.49 16 34 H 0.10 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 38 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 39 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 40 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 334.07 15.07 5.03 5.03 Total: -1.00 -27.36 334.07 -10.40 -37.76 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.74 Total: 6.69 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -2.68 Total: -26.58 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.00 Total: -38.78 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.36 -10.40 -37.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706850153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.124 kcal (2) G-P(sol) polarization free energy of solvation -27.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds