Wall clock time and date at job start Mon Mar 30 2020 06:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99475 * 2 1 4 4 H 1.48502 * 109.47039 * 269.99588 * 3 2 1 5 5 H 1.48499 * 109.47200 * 30.00043 * 3 2 1 6 6 H 1.48500 * 109.46811 * 150.00332 * 3 2 1 7 7 C 1.37869 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99967 * 173.36643 * 7 2 1 9 9 C 1.50707 * 119.99959 * 353.36477 * 7 2 1 10 10 C 1.52999 * 115.54686 * 85.27341 * 9 7 2 11 11 N 1.46900 * 109.47228 * 39.57494 * 10 9 7 12 12 C 1.46903 * 111.00008 * 174.71325 * 11 10 9 13 13 C 1.53002 * 109.47094 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.46700 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.81233 * 54.47779 * 14 13 12 16 16 C 1.53023 * 109.64582 * 293.94075 * 14 13 12 17 17 C 1.50067 * 110.14485 * 190.87997 * 16 14 13 18 18 C 1.29171 * 123.99538 * 17.09421 * 17 16 14 19 19 C 1.50066 * 124.28392 * 359.61064 * 18 17 16 20 20 C 1.53021 * 110.03452 * 17.04467 * 19 18 17 21 21 C 1.52992 * 117.51726 * 230.97357 * 9 7 2 22 22 C 1.52998 * 117.49793 * 299.60487 * 9 7 2 23 23 H 0.96997 * 120.00484 * 5.06143 * 1 2 3 24 24 H 1.09001 * 109.46933 * 279.57180 * 10 9 7 25 25 H 1.09002 * 109.47244 * 159.57501 * 10 9 7 26 26 H 1.00896 * 111.00169 * 298.66084 * 11 10 9 27 27 H 1.09000 * 109.47478 * 59.99319 * 12 11 10 28 28 H 1.09005 * 109.46696 * 299.99900 * 12 11 10 29 29 H 1.08997 * 109.47056 * 59.99859 * 13 12 11 30 30 H 1.09001 * 109.46733 * 299.99584 * 13 12 11 31 31 H 1.08996 * 109.35835 * 311.09332 * 16 14 13 32 32 H 1.09006 * 109.35302 * 70.67867 * 16 14 13 33 33 H 1.08005 * 117.96100 * 197.10945 * 17 16 14 34 34 H 1.07998 * 117.75330 * 179.61559 * 18 17 16 35 35 H 1.08996 * 109.35666 * 256.91244 * 19 18 17 36 36 H 1.08999 * 109.35964 * 137.18393 * 19 18 17 37 37 H 1.09003 * 109.64616 * 70.32005 * 20 19 18 38 38 H 1.09007 * 109.64149 * 190.73700 * 20 19 18 39 39 H 1.08999 * 117.49583 * 214.97053 * 21 9 7 40 40 H 1.08996 * 117.50342 * 359.97438 * 21 9 7 41 41 H 1.08997 * 117.50103 * 359.97231 * 22 9 7 42 42 H 1.08999 * 117.49868 * 144.99828 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0792 -1.1971 -0.1075 9 6 1.2587 -2.4947 0.1519 10 6 0.6963 -3.0872 -1.1417 11 7 1.6661 -2.8986 -2.2289 12 6 1.2154 -3.5652 -3.4579 13 6 2.2492 -3.3475 -4.5647 14 6 1.7800 -4.0424 -5.8445 15 1 0.7790 -3.6991 -6.1056 16 6 1.7650 -5.5576 -5.6313 17 6 1.5660 -6.2619 -6.9415 18 6 1.7430 -5.7065 -8.0942 19 6 2.1635 -4.2792 -8.2892 20 6 2.7495 -3.7231 -6.9896 21 6 1.7518 -3.4720 1.2207 22 6 0.4484 -2.6994 1.4335 23 1 -0.4851 0.8367 -0.0741 24 1 -0.2369 -2.5846 -1.3959 25 1 0.5092 -4.1520 -1.0024 26 1 1.8399 -1.9183 -2.3923 27 1 0.2574 -3.1475 -3.7676 28 1 1.1027 -4.6333 -3.2715 29 1 3.2068 -3.7657 -4.2547 30 1 2.3623 -2.2796 -4.7511 31 1 2.7128 -5.8703 -5.1933 32 1 0.9523 -5.8191 -4.9535 33 1 1.2557 -7.2962 -6.9184 34 1 1.5769 -6.3102 -8.9741 35 1 1.2977 -3.6838 -8.5788 36 1 2.9164 -4.2286 -9.0757 37 1 3.7147 -4.1902 -6.7934 38 1 2.8758 -2.6439 -7.0768 39 1 1.6755 -4.5372 1.0023 40 1 2.6161 -3.1746 1.8144 41 1 0.4552 -1.8935 2.1674 42 1 -0.4853 -3.2562 1.3551 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706850153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:52 Heat of formation + Delta-G solvation = -0.736325 kcal Electronic energy + Delta-G solvation = -18118.611304 eV Core-core repulsion = 15483.702460 eV Total energy + Delta-G solvation = -2634.908844 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.82707 -38.71053 -36.32671 -33.95064 -33.39106 -31.65206 -29.20542 -27.48308 -25.76304 -24.30018 -22.90069 -22.67891 -21.61293 -20.82130 -18.79383 -17.86321 -16.91624 -16.60275 -16.54628 -15.75900 -15.58210 -15.06469 -14.82100 -14.64415 -14.35644 -13.81625 -13.69827 -13.23918 -13.14978 -13.14426 -12.85542 -12.82089 -12.68268 -12.44590 -12.28631 -12.00221 -11.86722 -11.48248 -11.32873 -11.00560 -10.92879 -10.73908 -10.37942 -9.90628 -9.83434 -9.00488 -8.05088 -6.14490 1.42475 1.45792 1.46955 1.54696 2.45808 3.22170 3.37568 3.64457 3.81314 3.89966 4.01508 4.22642 4.37849 4.45062 4.49040 4.53862 4.54494 4.64002 4.65782 4.75881 4.78219 4.80477 4.92977 5.01333 5.03501 5.05743 5.11324 5.11898 5.17637 5.24600 5.27788 5.31683 5.41584 5.58638 5.64297 5.66291 5.82274 5.84237 6.12211 6.41519 6.59535 6.75294 6.93248 7.52126 9.02492 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.026237 B = 0.004564 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.919903 B = 6132.888738 C = 6866.782981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.026 3.974 3 Si 0.945 3.055 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.489 4.489 8 H 0.051 0.949 9 C 0.024 3.976 10 C 0.119 3.881 11 N -0.679 5.679 12 C 0.060 3.940 13 C -0.100 4.100 14 C -0.080 4.080 15 H 0.063 0.937 16 C -0.088 4.088 17 C -0.164 4.164 18 C -0.163 4.163 19 C -0.091 4.091 20 C -0.114 4.114 21 C -0.187 4.187 22 C -0.168 4.168 23 H 0.257 0.743 24 H -0.002 1.002 25 H 0.050 0.950 26 H 0.340 0.660 27 H 0.009 0.991 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.011 -9.297 -14.633 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.173 4.173 3 Si 0.772 3.228 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.196 1.196 7 C -0.527 4.527 8 H 0.070 0.930 9 C 0.023 3.977 10 C -0.011 4.011 11 N -0.310 5.310 12 C -0.070 4.070 13 C -0.138 4.138 14 C -0.099 4.099 15 H 0.082 0.918 16 C -0.125 4.125 17 C -0.182 4.182 18 C -0.181 4.181 19 C -0.128 4.128 20 C -0.152 4.152 21 C -0.224 4.224 22 C -0.207 4.207 23 H 0.066 0.934 24 H 0.016 0.984 25 H 0.069 0.931 26 H 0.159 0.841 27 H 0.027 0.973 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.252 -9.706 -14.370 17.643 hybrid contribution -0.715 1.589 0.084 1.745 sum 2.537 -8.117 -14.286 16.626 Atomic orbital electron populations 1.70108 1.07048 1.27026 1.50758 1.25609 0.95395 1.01551 0.94779 0.85751 0.78735 0.80092 0.78258 1.19945 1.21580 1.19634 1.20564 0.92800 0.89810 1.49570 0.93031 1.18986 0.97943 0.93995 0.86773 1.21163 0.91613 0.96470 0.91840 1.60431 1.45678 1.19327 1.05564 1.22027 0.95766 0.99117 0.90063 1.21510 0.98701 1.00255 0.93358 1.21123 0.99338 0.95120 0.94315 0.91833 1.20534 1.02149 0.94046 0.95733 1.22134 1.01378 1.00230 0.94449 1.22163 1.00869 0.97237 0.97833 1.20486 1.01002 0.93570 0.97764 1.21645 0.98448 1.00954 0.94119 1.22986 0.96929 0.96492 1.05958 1.22429 0.93491 1.01316 1.03424 0.93382 0.98355 0.93127 0.84114 0.97317 0.91197 0.91377 0.92689 0.90824 0.91402 0.87230 0.86951 0.90772 0.89878 0.91784 0.91465 0.89485 0.90846 0.92527 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.69 12.93 21.44 0.28 -51.42 16 2 C 0.03 1.42 5.39 84.65 0.46 1.88 16 3 Si 0.95 43.07 29.55 68.60 2.03 45.10 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.49 -26.31 7.47 25.60 0.19 -26.12 16 8 H 0.05 2.82 7.82 -2.91 -0.02 2.79 16 9 C 0.02 1.17 1.76 -52.93 -0.09 1.08 16 10 C 0.12 5.40 5.80 86.30 0.50 5.90 16 11 N -0.68 -28.02 6.26 -513.87 -3.22 -31.24 16 12 C 0.06 1.97 5.46 86.30 0.47 2.44 16 13 C -0.10 -2.75 4.94 30.60 0.15 -2.60 16 14 C -0.08 -1.81 2.23 -10.65 -0.02 -1.84 16 15 H 0.06 1.52 8.12 -2.39 -0.02 1.50 16 16 C -0.09 -1.87 4.94 29.66 0.15 -1.73 16 17 C -0.16 -3.11 9.80 27.30 0.27 -2.85 16 18 C -0.16 -2.85 9.78 27.30 0.27 -2.58 16 19 C -0.09 -1.53 6.12 29.66 0.18 -1.35 16 20 C -0.11 -2.23 5.31 30.73 0.16 -2.06 16 21 C -0.19 -8.21 9.88 30.59 0.30 -7.91 16 22 C -0.17 -8.09 9.46 30.59 0.29 -7.80 16 23 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 24 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 25 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 26 H 0.34 15.32 7.71 -89.70 -0.69 14.63 16 27 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.07 2.17 6.86 -2.38 -0.02 2.16 16 29 H 0.07 1.90 8.09 -2.39 -0.02 1.88 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.58 8.06 -2.39 -0.02 1.56 16 32 H 0.07 1.49 7.15 -2.38 -0.02 1.47 16 33 H 0.11 1.82 8.06 -2.91 -0.02 1.79 16 34 H 0.11 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.25 8.12 -2.39 -0.02 1.23 16 38 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.09 3.39 8.08 -2.39 -0.02 3.37 16 40 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 42 H 0.07 3.16 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -57.15 334.07 2.62 -54.53 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.26 Total: 28.56 kcal Atomic # 6 Polarization: -48.81 SS G_CDS: 3.27 Total: -45.54 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -2.94 Total: -82.65 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -57.15 2.62 -54.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706850153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.790 kcal (2) G-P(sol) polarization free energy of solvation -57.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds