Wall clock time and date at job start Mon Mar 30 2020 06:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00263 * 2 1 4 4 H 1.48497 * 109.47359 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47144 * 299.99764 * 3 2 1 6 6 H 1.48501 * 109.47004 * 59.99168 * 3 2 1 7 7 C 1.37875 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00114 * 173.37520 * 7 2 1 9 9 C 1.50700 * 120.00152 * 353.37499 * 7 2 1 10 10 C 1.53004 * 115.55207 * 85.27073 * 9 7 2 11 11 N 1.46898 * 109.46895 * 39.57479 * 10 9 7 12 12 C 1.46897 * 110.99938 * 174.71208 * 11 10 9 13 13 C 1.53005 * 109.47217 * 180.02562 * 12 11 10 14 14 H 1.09003 * 110.04941 * 55.03402 * 13 12 11 15 15 C 1.54381 * 110.06770 * 293.54333 * 13 12 11 16 16 C 1.54922 * 104.33707 * 217.08356 * 15 13 12 17 17 C 1.55327 * 102.66329 * 37.71209 * 16 15 13 18 18 C 1.53483 * 110.11558 * 176.54759 * 13 12 11 19 19 C 1.52553 * 121.07891 * 335.21356 * 18 13 12 20 20 C 1.52566 * 121.05978 * 263.50182 * 18 13 12 21 21 C 1.53007 * 117.51526 * 230.97265 * 9 7 2 22 22 C 1.52999 * 59.99937 * 107.48154 * 21 9 7 23 23 H 0.96997 * 119.99540 * 5.05480 * 1 2 3 24 24 H 1.08988 * 109.46702 * 279.57341 * 10 9 7 25 25 H 1.09002 * 109.46742 * 159.57566 * 10 9 7 26 26 H 1.00901 * 111.00363 * 298.66682 * 11 10 9 27 27 H 1.09002 * 109.47443 * 59.99683 * 12 11 10 28 28 H 1.09001 * 109.47060 * 299.99500 * 12 11 10 29 29 H 1.08998 * 110.48200 * 335.83711 * 15 13 12 30 30 H 1.09009 * 110.47915 * 98.33574 * 15 13 12 31 31 H 1.08999 * 110.74065 * 156.12148 * 16 15 13 32 32 H 1.09008 * 110.74270 * 279.45435 * 16 15 13 33 33 H 1.09000 * 110.49812 * 203.80624 * 17 16 15 34 34 H 1.09004 * 110.49526 * 81.12083 * 17 16 15 35 35 H 1.08995 * 117.51518 * 357.02619 * 19 18 13 36 36 H 1.09005 * 117.50486 * 142.10351 * 19 18 13 37 37 H 1.08997 * 117.51482 * 217.92989 * 20 18 13 38 38 H 1.09008 * 117.50885 * 3.01732 * 20 18 13 39 39 H 1.09000 * 117.49605 * 214.97026 * 21 9 7 40 40 H 1.08994 * 117.50155 * 359.97438 * 21 9 7 41 41 H 1.08999 * 117.49837 * 252.50916 * 22 21 9 42 42 H 1.08999 * 117.50376 * 107.49028 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0791 -1.1973 -0.1074 9 6 1.2585 -2.4947 0.1517 10 6 0.6961 -3.0872 -1.1421 11 7 1.6660 -2.8985 -2.2291 12 6 1.2155 -3.5651 -3.4581 13 6 2.2494 -3.3474 -4.5648 14 1 3.2311 -3.6829 -4.2303 15 6 2.3036 -1.8541 -4.9528 16 6 2.5234 -1.8639 -6.4863 17 6 1.6542 -3.0659 -6.9473 18 6 1.8356 -4.1094 -5.8312 19 6 0.9304 -5.3349 -5.7523 20 6 2.4033 -5.4917 -6.1389 21 6 1.7515 -3.4722 1.2206 22 6 0.4482 -2.6996 1.4332 23 1 -0.4849 0.8368 -0.0740 24 1 -0.2369 -2.5845 -1.3963 25 1 0.5090 -4.1519 -1.0027 26 1 1.8401 -1.9182 -2.3924 27 1 0.2576 -3.1472 -3.7680 28 1 1.1028 -4.6331 -3.2719 29 1 1.3633 -1.3614 -4.7055 30 1 3.1357 -1.3597 -4.4514 31 1 2.1697 -0.9347 -6.9330 32 1 3.5737 -2.0329 -6.7247 33 1 2.0167 -3.4567 -7.8980 34 1 0.6079 -2.7713 -7.0284 35 1 0.6307 -5.6767 -4.7617 36 1 0.1870 -5.4631 -6.5392 37 1 2.6289 -5.7230 -7.1799 38 1 3.0726 -5.9365 -5.4024 39 1 1.6751 -4.5374 1.0021 40 1 2.6157 -3.1749 1.8144 41 1 0.4548 -1.8937 2.1671 42 1 -0.4856 -3.2563 1.3547 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706990195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:08 Heat of formation + Delta-G solvation = 30.228424 kcal Electronic energy + Delta-G solvation = -18714.660945 eV Core-core repulsion = 16081.094833 eV Total energy + Delta-G solvation = -2633.566112 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.40649 -36.82873 -34.54001 -33.52034 -31.88213 -29.36367 -26.10620 -25.43489 -24.30141 -22.72505 -21.91406 -20.96556 -20.17070 -19.07950 -18.09982 -15.90158 -15.68506 -15.10171 -15.00419 -14.57110 -14.23125 -13.78513 -13.50602 -12.89049 -12.63235 -12.49906 -12.19140 -12.04225 -11.51193 -11.24826 -11.17010 -10.96911 -10.87534 -10.77051 -10.56396 -10.39963 -10.37044 -10.19861 -10.11306 -10.04480 -9.51377 -9.28448 -8.74850 -8.39990 -8.00996 -7.28768 -5.98922 -4.03045 3.28788 3.38259 3.42876 3.83441 4.42845 4.50999 4.74093 4.87994 4.96346 5.23287 5.28685 5.32570 5.35971 5.50691 5.63753 5.66915 5.73475 5.84912 5.89233 5.89990 6.00898 6.11823 6.16810 6.18284 6.22282 6.27050 6.33000 6.43348 6.47226 6.54461 6.64213 6.71419 6.83500 6.87209 7.02976 7.19005 7.50399 7.57216 7.92909 8.17472 8.50049 8.59716 9.00359 9.60896 11.09291 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022017 B = 0.006278 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.453472 B = 4459.251118 C = 5347.759192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.067 3.933 3 Si 0.885 3.115 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.480 4.480 8 H 0.062 0.938 9 C 0.051 3.949 10 C 0.108 3.892 11 N -0.676 5.676 12 C 0.066 3.934 13 C -0.052 4.052 14 H 0.080 0.920 15 C -0.120 4.120 16 C -0.122 4.122 17 C -0.087 4.087 18 C -0.121 4.121 19 C -0.174 4.174 20 C -0.171 4.171 21 C -0.208 4.208 22 C -0.164 4.164 23 H 0.258 0.742 24 H 0.026 0.974 25 H 0.035 0.965 26 H 0.353 0.647 27 H 0.019 0.981 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.115 -6.598 -12.116 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.713 3.287 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.519 4.519 8 H 0.080 0.920 9 C 0.050 3.950 10 C -0.021 4.021 11 N -0.309 5.309 12 C -0.063 4.063 13 C -0.070 4.070 14 H 0.098 0.902 15 C -0.157 4.157 16 C -0.159 4.159 17 C -0.125 4.125 18 C -0.121 4.121 19 C -0.211 4.211 20 C -0.208 4.208 21 C -0.245 4.245 22 C -0.202 4.202 23 H 0.067 0.933 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.174 0.826 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.348 -6.981 -11.843 13.946 hybrid contribution -0.462 1.455 -0.211 1.541 sum 1.886 -5.526 -12.054 13.394 Atomic orbital electron populations 1.70013 1.05833 1.26365 1.49793 1.25004 0.94759 0.98740 0.95011 0.86645 0.80443 0.84108 0.77515 1.19618 1.21177 1.21135 1.20446 0.93185 0.88503 1.49720 0.91997 1.18804 0.97002 0.93608 0.85586 1.21333 0.92596 0.96225 0.91952 1.60421 1.46041 1.20187 1.04215 1.21974 0.95014 0.98900 0.90451 1.21217 0.99646 0.94231 0.91937 0.90202 1.22424 1.02327 0.96025 0.94958 1.22516 0.99570 0.97464 0.96375 1.21922 0.99942 0.94512 0.96089 1.21776 1.04019 0.88916 0.97412 1.22955 0.93180 1.02143 1.02814 1.22957 0.96671 0.99489 1.01691 1.22985 0.98012 0.95618 1.07895 1.22517 0.92195 1.01294 1.04159 0.93265 0.95578 0.94686 0.82645 0.96331 0.92326 0.91552 0.91050 0.91808 0.91644 0.92161 0.91472 0.88449 0.89264 0.89281 0.88836 0.91942 0.90783 0.90298 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.73 12.93 55.43 0.72 -24.02 16 2 C 0.07 1.81 5.39 -17.82 -0.10 1.71 16 3 Si 0.88 20.90 29.55 -169.99 -5.02 15.87 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.48 -12.86 7.47 -34.44 -0.26 -13.12 16 8 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 9 C 0.05 1.26 1.76 -155.65 -0.27 0.99 16 10 C 0.11 2.47 5.80 -3.82 -0.02 2.45 16 11 N -0.68 -14.03 6.26 -113.78 -0.71 -14.74 16 12 C 0.07 1.14 4.47 -3.82 -0.02 1.12 16 13 C -0.05 -0.76 3.03 -89.64 -0.27 -1.03 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 15 C -0.12 -1.73 5.50 -24.99 -0.14 -1.87 16 16 C -0.12 -1.45 6.94 -24.48 -0.17 -1.62 16 17 C -0.09 -1.00 6.59 -25.04 -0.17 -1.17 16 18 C -0.12 -1.51 2.26 -154.26 -0.35 -1.86 16 19 C -0.17 -2.04 9.62 -26.92 -0.26 -2.30 16 20 C -0.17 -1.91 10.23 -26.91 -0.28 -2.19 16 21 C -0.21 -4.72 9.88 -26.73 -0.26 -4.99 16 22 C -0.16 -3.94 9.46 -26.73 -0.25 -4.20 16 23 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 24 H 0.03 0.65 8.14 -51.94 -0.42 0.23 16 25 H 0.03 0.75 7.93 -51.93 -0.41 0.34 16 26 H 0.35 7.83 6.89 -39.29 -0.27 7.56 16 27 H 0.02 0.33 8.04 -51.93 -0.42 -0.08 16 28 H 0.06 0.98 6.54 -51.93 -0.34 0.64 16 29 H 0.07 1.04 7.79 -51.93 -0.40 0.64 16 30 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.20 6.44 -51.93 -0.33 0.87 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 39 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 40 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 332.12 15.07 5.01 5.01 Total: -1.00 -27.20 332.12 -10.46 -37.66 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -7.64 Total: 8.28 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -2.81 Total: -28.07 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.00 Total: -38.76 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.20 -10.46 -37.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706990195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.893 kcal (2) G-P(sol) polarization free energy of solvation -27.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds