Wall clock time and date at job start Mon Mar 30 2020 06:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00263 * 2 1 4 4 H 1.48497 * 109.47359 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47144 * 299.99764 * 3 2 1 6 6 H 1.48501 * 109.47004 * 59.99168 * 3 2 1 7 7 C 1.37875 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00114 * 173.37520 * 7 2 1 9 9 C 1.50700 * 120.00152 * 353.37499 * 7 2 1 10 10 C 1.53004 * 115.55207 * 85.27073 * 9 7 2 11 11 N 1.46898 * 109.46895 * 39.57479 * 10 9 7 12 12 C 1.46897 * 110.99938 * 174.71208 * 11 10 9 13 13 C 1.53005 * 109.47217 * 180.02562 * 12 11 10 14 14 H 1.09003 * 110.04941 * 55.03402 * 13 12 11 15 15 C 1.54381 * 110.06770 * 293.54333 * 13 12 11 16 16 C 1.54922 * 104.33707 * 217.08356 * 15 13 12 17 17 C 1.55327 * 102.66329 * 37.71209 * 16 15 13 18 18 C 1.53483 * 110.11558 * 176.54759 * 13 12 11 19 19 C 1.52553 * 121.07891 * 335.21356 * 18 13 12 20 20 C 1.52566 * 121.05978 * 263.50182 * 18 13 12 21 21 C 1.53007 * 117.51526 * 230.97265 * 9 7 2 22 22 C 1.52999 * 59.99937 * 107.48154 * 21 9 7 23 23 H 0.96997 * 119.99540 * 5.05480 * 1 2 3 24 24 H 1.08988 * 109.46702 * 279.57341 * 10 9 7 25 25 H 1.09002 * 109.46742 * 159.57566 * 10 9 7 26 26 H 1.00901 * 111.00363 * 298.66682 * 11 10 9 27 27 H 1.09002 * 109.47443 * 59.99683 * 12 11 10 28 28 H 1.09001 * 109.47060 * 299.99500 * 12 11 10 29 29 H 1.08998 * 110.48200 * 335.83711 * 15 13 12 30 30 H 1.09009 * 110.47915 * 98.33574 * 15 13 12 31 31 H 1.08999 * 110.74065 * 156.12148 * 16 15 13 32 32 H 1.09008 * 110.74270 * 279.45435 * 16 15 13 33 33 H 1.09000 * 110.49812 * 203.80624 * 17 16 15 34 34 H 1.09004 * 110.49526 * 81.12083 * 17 16 15 35 35 H 1.08995 * 117.51518 * 357.02619 * 19 18 13 36 36 H 1.09005 * 117.50486 * 142.10351 * 19 18 13 37 37 H 1.08997 * 117.51482 * 217.92989 * 20 18 13 38 38 H 1.09008 * 117.50885 * 3.01732 * 20 18 13 39 39 H 1.09000 * 117.49605 * 214.97026 * 21 9 7 40 40 H 1.08994 * 117.50155 * 359.97438 * 21 9 7 41 41 H 1.08999 * 117.49837 * 252.50916 * 22 21 9 42 42 H 1.08999 * 117.50376 * 107.49028 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0791 -1.1973 -0.1074 9 6 1.2585 -2.4947 0.1517 10 6 0.6961 -3.0872 -1.1421 11 7 1.6660 -2.8985 -2.2291 12 6 1.2155 -3.5651 -3.4581 13 6 2.2494 -3.3474 -4.5648 14 1 3.2311 -3.6829 -4.2303 15 6 2.3036 -1.8541 -4.9528 16 6 2.5234 -1.8639 -6.4863 17 6 1.6542 -3.0659 -6.9473 18 6 1.8356 -4.1094 -5.8312 19 6 0.9304 -5.3349 -5.7523 20 6 2.4033 -5.4917 -6.1389 21 6 1.7515 -3.4722 1.2206 22 6 0.4482 -2.6996 1.4332 23 1 -0.4849 0.8368 -0.0740 24 1 -0.2369 -2.5845 -1.3963 25 1 0.5090 -4.1519 -1.0027 26 1 1.8401 -1.9182 -2.3924 27 1 0.2576 -3.1472 -3.7680 28 1 1.1028 -4.6331 -3.2719 29 1 1.3633 -1.3614 -4.7055 30 1 3.1357 -1.3597 -4.4514 31 1 2.1697 -0.9347 -6.9330 32 1 3.5737 -2.0329 -6.7247 33 1 2.0167 -3.4567 -7.8980 34 1 0.6079 -2.7713 -7.0284 35 1 0.6307 -5.6767 -4.7617 36 1 0.1870 -5.4631 -6.5392 37 1 2.6289 -5.7230 -7.1799 38 1 3.0726 -5.9365 -5.4024 39 1 1.6751 -4.5374 1.0021 40 1 2.6157 -3.1749 1.8144 41 1 0.4548 -1.8937 2.1671 42 1 -0.4856 -3.2563 1.3547 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706990195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:07 Heat of formation + Delta-G solvation = 17.115146 kcal Electronic energy + Delta-G solvation = -18715.229580 eV Core-core repulsion = 16081.094833 eV Total energy + Delta-G solvation = -2634.134746 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.47408 -38.66758 -35.93569 -34.70503 -33.95638 -30.69716 -27.68749 -27.01157 -25.84445 -23.91135 -23.01891 -22.84522 -21.27438 -21.00403 -19.22149 -17.86154 -16.92539 -16.59844 -16.40187 -16.11145 -15.63609 -15.34208 -15.02608 -14.39525 -14.11706 -13.82381 -13.49055 -13.39590 -13.06803 -12.94150 -12.86678 -12.63163 -12.31207 -12.24500 -11.97847 -11.88332 -11.64531 -11.47741 -11.42334 -11.22475 -11.04466 -10.75770 -10.48345 -10.35306 -9.91913 -9.02089 -8.06561 -6.15734 1.39541 1.44063 1.54274 2.44404 2.88853 3.20724 3.36022 3.56194 3.68961 3.77849 3.99214 4.10460 4.25630 4.32867 4.36935 4.46658 4.52998 4.61926 4.63589 4.75591 4.82217 4.85055 4.90012 4.95950 4.98304 5.01466 5.03257 5.10587 5.15265 5.20347 5.23454 5.27022 5.32578 5.38668 5.41728 5.51579 5.63006 5.65002 5.81293 6.39910 6.57990 6.74939 6.92102 7.50784 9.01319 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022017 B = 0.006278 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.453472 B = 4459.251118 C = 5347.759192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.026 3.974 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.286 1.286 7 C -0.487 4.487 8 H 0.051 0.949 9 C 0.022 3.978 10 C 0.120 3.880 11 N -0.678 5.678 12 C 0.072 3.928 13 C -0.047 4.047 14 H 0.071 0.929 15 C -0.123 4.123 16 C -0.115 4.115 17 C -0.083 4.083 18 C -0.134 4.134 19 C -0.176 4.176 20 C -0.158 4.158 21 C -0.186 4.186 22 C -0.167 4.167 23 H 0.257 0.743 24 H -0.003 1.003 25 H 0.049 0.951 26 H 0.342 0.658 27 H 0.009 0.991 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.936 -7.422 -13.630 15.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.174 4.174 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.213 1.213 7 C -0.525 4.525 8 H 0.069 0.931 9 C 0.021 3.979 10 C -0.009 4.009 11 N -0.309 5.309 12 C -0.058 4.058 13 C -0.066 4.066 14 H 0.089 0.911 15 C -0.161 4.161 16 C -0.153 4.153 17 C -0.120 4.120 18 C -0.134 4.134 19 C -0.213 4.213 20 C -0.195 4.195 21 C -0.223 4.223 22 C -0.205 4.205 23 H 0.066 0.934 24 H 0.015 0.985 25 H 0.067 0.933 26 H 0.161 0.839 27 H 0.027 0.973 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.180 -7.820 -13.360 15.804 hybrid contribution -0.713 1.669 0.297 1.839 sum 2.467 -6.151 -13.063 14.648 Atomic orbital electron populations 1.70115 1.07022 1.26954 1.50815 1.25605 0.95405 1.01528 0.94815 0.85728 0.79398 0.80522 0.77375 1.19194 1.20657 1.21256 1.20575 0.92751 0.89764 1.49426 0.93088 1.19003 0.98021 0.94049 0.86778 1.21141 0.91580 0.96356 0.91849 1.60437 1.45552 1.19545 1.05375 1.22019 0.95359 0.98599 0.89796 1.21130 0.98262 0.94890 0.92273 0.91095 1.22400 1.00833 0.95574 0.97270 1.22502 1.00450 0.98366 0.93971 1.21912 0.99795 0.93781 0.96517 1.21757 1.05491 0.89650 0.96528 1.23003 0.94058 1.01346 1.02869 1.23031 0.95999 0.97617 1.02814 1.22987 0.96969 0.96461 1.05929 1.22423 0.93468 1.01297 1.03358 0.93369 0.98451 0.93275 0.83876 0.97324 0.91667 0.93492 0.92149 0.90890 0.90618 0.90066 0.91699 0.89477 0.87822 0.87228 0.89100 0.89532 0.90784 0.92485 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.88 12.93 21.45 0.28 -51.60 16 2 C 0.03 1.42 5.39 84.65 0.46 1.87 16 3 Si 0.94 43.30 29.55 68.60 2.03 45.32 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.49 -26.33 7.47 25.60 0.19 -26.14 16 8 H 0.05 2.81 7.82 -2.91 -0.02 2.79 16 9 C 0.02 1.10 1.76 -52.92 -0.09 1.01 16 10 C 0.12 5.54 5.80 86.30 0.50 6.04 16 11 N -0.68 -28.41 6.26 -513.89 -3.22 -31.63 16 12 C 0.07 2.45 4.47 86.31 0.39 2.84 16 13 C -0.05 -1.36 3.03 -10.16 -0.03 -1.39 16 14 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 15 C -0.12 -3.55 5.50 31.72 0.17 -3.38 16 16 C -0.12 -2.54 6.94 32.05 0.22 -2.32 16 17 C -0.08 -1.70 6.59 31.69 0.21 -1.49 16 18 C -0.13 -3.10 2.26 -52.02 -0.12 -3.22 16 19 C -0.18 -3.75 9.62 30.47 0.29 -3.46 16 20 C -0.16 -3.09 10.23 30.48 0.31 -2.78 16 21 C -0.19 -8.26 9.88 30.60 0.30 -7.95 16 22 C -0.17 -8.07 9.46 30.59 0.29 -7.78 16 23 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 24 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 26 H 0.34 15.59 6.89 -89.69 -0.62 14.97 16 27 H 0.01 0.31 8.04 -2.39 -0.02 0.29 16 28 H 0.07 2.14 6.54 -2.39 -0.02 2.12 16 29 H 0.05 1.51 7.79 -2.39 -0.02 1.49 16 30 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.08 1.35 8.11 -2.39 -0.02 1.33 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 2.03 6.44 -2.39 -0.02 2.02 16 36 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.09 3.40 8.08 -2.39 -0.02 3.38 16 40 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 41 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.07 3.17 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -57.57 332.12 2.53 -55.04 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.35 Total: 31.01 kcal Atomic # 6 Polarization: -51.24 SS G_CDS: 3.09 Total: -48.15 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -2.94 Total: -83.23 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -57.57 2.53 -55.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706990195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.155 kcal (2) G-P(sol) polarization free energy of solvation -57.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds