Wall clock time and date at job start Mon Mar 30 2020 06:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.51460 * 111.54230 * 2 1 4 4 C 1.53778 * 105.99785 * 54.84331 * 3 2 1 5 5 C 1.52378 * 111.60166 * 57.66015 * 4 3 2 6 6 C 1.53949 * 112.55435 * 306.17485 * 5 4 3 7 7 C 1.51827 * 106.24280 * 56.80709 * 6 5 4 8 8 H 1.08999 * 113.49737 * 61.00895 * 7 6 5 9 9 C 1.50432 * 124.10110 * 206.52159 * 7 6 5 10 10 N 1.43574 * 112.05384 * 212.21276 * 2 1 3 11 11 C 1.46903 * 110.99890 * 36.41821 * 10 2 1 12 12 C 1.52995 * 109.47493 * 170.00038 * 11 10 2 13 13 C 1.50707 * 115.54560 * 34.33240 * 12 11 10 14 14 H 1.07993 * 119.99812 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99733 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99974 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99943 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47145 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47402 * 120.00103 * 17 15 13 20 20 H 1.48502 * 109.46780 * 240.00034 * 17 15 13 21 21 C 1.52998 * 117.50059 * 248.62592 * 12 11 10 22 22 C 1.52999 * 60.00086 * 252.50595 * 21 12 11 23 23 H 1.08999 * 109.47099 * 216.85237 * 1 2 3 24 24 H 1.08999 * 109.47111 * 96.85711 * 1 2 3 25 25 H 1.09000 * 109.47383 * 336.85404 * 1 2 3 26 26 H 1.09001 * 110.18423 * 175.13317 * 3 2 1 27 27 H 1.08998 * 110.18177 * 297.01050 * 3 2 1 28 28 H 1.08997 * 109.46371 * 296.97359 * 4 3 2 29 29 H 1.09000 * 108.90772 * 177.97493 * 4 3 2 30 30 H 1.08994 * 108.86190 * 185.38486 * 5 4 3 31 31 H 1.08999 * 108.86704 * 66.96739 * 5 4 3 32 32 H 1.09001 * 110.09342 * 297.62410 * 6 5 4 33 33 H 1.09005 * 110.18637 * 176.04192 * 6 5 4 34 34 H 1.09000 * 113.94623 * 24.35966 * 9 7 6 35 35 H 1.09005 * 113.94337 * 252.40468 * 9 7 6 36 36 H 1.08999 * 109.47253 * 290.00975 * 11 10 2 37 37 H 1.09004 * 109.47089 * 49.99844 * 11 10 2 38 38 H 0.97001 * 119.99833 * 179.97438 * 16 15 13 39 39 H 1.08999 * 117.49870 * 359.97438 * 21 12 11 40 40 H 1.09003 * 117.49831 * 145.02051 * 21 12 11 41 41 H 1.08996 * 117.50269 * 252.51263 * 22 21 12 42 42 H 1.09004 * 117.49642 * 107.48184 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0861 1.4088 0.0000 4 6 1.4500 2.1156 1.2086 5 6 1.7489 1.3806 2.5095 6 6 1.3509 -0.1055 2.4529 7 6 2.0980 -0.7006 1.2727 8 1 3.1820 -0.6385 1.3685 9 6 1.6267 -1.8976 0.4929 10 7 2.0691 -1.1259 -0.7093 11 6 1.2438 -1.4552 -1.8792 12 6 1.9727 -2.4858 -2.7437 13 6 2.8073 -3.4908 -1.9921 14 1 2.8602 -3.4505 -0.9143 15 6 3.5039 -4.4611 -2.6809 16 7 3.4405 -4.5093 -3.9937 17 14 4.5377 -5.7073 -1.7493 18 1 4.4427 -5.4387 -0.2920 19 1 4.0386 -7.0765 -2.0344 20 1 5.9542 -5.5968 -2.1813 21 6 2.4805 -2.0275 -4.1122 22 6 1.2721 -2.9612 -4.0181 23 1 -0.3633 -0.8223 0.6163 24 1 -0.3633 -0.1227 -1.0203 25 1 -0.3634 0.9449 0.4039 26 1 3.1724 1.3843 0.0868 27 1 1.7920 1.9292 -0.9115 28 1 0.3699 2.1678 1.0717 29 1 1.8475 3.1283 1.2749 30 1 1.2011 1.8615 3.3198 31 1 2.8165 1.4519 2.7174 32 1 0.2756 -0.1998 2.3015 33 1 1.6444 -0.6089 3.3742 34 1 0.5503 -2.0617 0.5419 35 1 2.2074 -2.8017 0.6764 36 1 0.2912 -1.8679 -1.5473 37 1 1.0648 -0.5525 -2.4633 38 1 3.9309 -5.1917 -4.4782 39 1 2.2949 -0.9919 -4.3969 40 1 3.4185 -2.4528 -4.4693 41 1 1.4151 -4.0007 -4.3131 42 1 0.2918 -2.5397 -4.2405 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707188581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:26 Heat of formation + Delta-G solvation = 100.242136 kcal Electronic energy + Delta-G solvation = -19630.454292 eV Core-core repulsion = 16999.924203 eV Total energy + Delta-G solvation = -2630.530089 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.81412 -36.66523 -35.19846 -31.62645 -31.11944 -29.10299 -28.01904 -25.60428 -25.37682 -23.65463 -20.81535 -20.58474 -20.31462 -18.80771 -17.72458 -15.94751 -15.77246 -15.36735 -14.84499 -14.43420 -13.99595 -13.70234 -13.45454 -12.94243 -12.61869 -12.39519 -12.10226 -11.81065 -11.60544 -11.37180 -11.10676 -10.99863 -10.98310 -10.80401 -10.50300 -10.43542 -10.19774 -9.99845 -9.89461 -9.85296 -9.29746 -8.93290 -8.64517 -8.22039 -8.05615 -7.83903 -5.82360 -3.84366 3.34241 3.42508 3.46124 4.16029 4.50003 4.73572 4.85404 5.05168 5.18738 5.22349 5.32431 5.37771 5.47999 5.56699 5.61398 5.69116 5.85665 5.90042 5.94532 6.01556 6.05153 6.10478 6.17984 6.22984 6.28044 6.33172 6.39897 6.41700 6.47771 6.57525 6.62607 6.78970 6.89248 7.03894 7.18799 7.31810 7.47096 7.76797 7.98414 8.18123 8.34933 8.68110 9.12251 9.68940 11.14431 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028479 B = 0.006993 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.939509 B = 4003.239145 C = 4592.266294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.026 3.974 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.106 4.106 7 C -0.124 4.124 8 H 0.101 0.899 9 C 0.008 3.992 10 N -0.409 5.409 11 C 0.062 3.938 12 C 0.028 3.972 13 C -0.451 4.451 14 H 0.069 0.931 15 C 0.051 3.949 16 N -0.886 5.886 17 Si 0.892 3.108 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.286 1.286 21 C -0.186 4.186 22 C -0.195 4.195 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.034 0.966 37 H 0.048 0.952 38 H 0.254 0.746 39 H 0.037 0.963 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 10.118 10.724 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.065 4.065 3 C -0.124 4.124 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.144 4.144 7 C -0.143 4.143 8 H 0.120 0.880 9 C -0.120 4.120 10 N -0.129 5.129 11 C -0.066 4.066 12 C 0.027 3.973 13 C -0.489 4.489 14 H 0.087 0.913 15 C -0.149 4.149 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.214 1.214 20 H -0.213 1.213 21 C -0.224 4.224 22 C -0.233 4.233 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.531 9.993 10.275 15.032 hybrid contribution -0.311 -0.672 0.248 0.781 sum -4.842 9.321 10.523 14.868 Atomic orbital electron populations 1.22695 0.96114 1.02434 1.02577 1.22383 0.93059 0.94466 0.96616 1.21144 1.00355 0.93701 0.97187 1.21607 1.00868 0.98421 0.94606 1.21442 1.01275 0.95354 0.97012 1.21438 1.00162 0.94891 0.97913 1.22835 1.00462 0.97663 0.93361 0.88043 1.23796 0.99500 0.97328 0.91346 1.69542 1.42108 1.01015 1.00280 1.22184 0.94174 0.97321 0.92881 1.18876 0.97760 0.94958 0.85659 1.20737 1.25109 1.09719 0.93339 0.91261 1.25039 0.97003 0.97901 0.94925 1.70046 1.42457 1.34133 1.05871 0.86525 0.80158 0.81134 0.80103 1.19819 1.21386 1.21274 1.22807 1.00080 0.94069 1.05457 1.22836 0.92105 1.01276 1.07078 0.91523 0.91840 0.91742 0.90984 0.92686 0.91732 0.92379 0.92692 0.92358 0.91536 0.92228 0.90960 0.89594 0.94749 0.93364 0.93511 0.94467 0.87425 0.87293 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 6.53 37.16 0.24 -2.24 16 2 C 0.03 0.41 1.52 -151.74 -0.23 0.18 16 3 C -0.09 -1.18 5.76 -27.10 -0.16 -1.33 16 4 C -0.12 -1.27 5.53 -26.64 -0.15 -1.42 16 5 C -0.11 -1.18 5.77 -26.55 -0.15 -1.34 16 6 C -0.11 -1.23 5.87 -26.83 -0.16 -1.39 16 7 C -0.12 -1.83 3.63 -91.39 -0.33 -2.16 16 8 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 9 C 0.01 0.14 6.28 -22.81 -0.14 0.00 16 10 N -0.41 -8.06 5.63 -292.41 -1.65 -9.71 16 11 C 0.06 1.33 3.87 -3.83 -0.01 1.32 16 12 C 0.03 0.72 2.52 -155.66 -0.39 0.33 16 13 C -0.45 -12.39 8.63 -34.44 -0.30 -12.69 16 14 H 0.07 1.86 5.00 -52.49 -0.26 1.60 16 15 C 0.05 1.42 5.28 -17.82 -0.09 1.33 16 16 N -0.89 -25.37 8.59 55.43 0.48 -24.90 16 17 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 C -0.19 -4.87 9.31 -26.73 -0.25 -5.12 16 22 C -0.19 -5.01 9.38 -26.73 -0.25 -5.26 16 23 H 0.07 0.89 4.84 -51.93 -0.25 0.64 16 24 H 0.06 0.94 6.03 -51.93 -0.31 0.63 16 25 H 0.06 0.76 5.26 -51.93 -0.27 0.49 16 26 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.67 5.76 -51.93 -0.30 0.37 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.75 6.03 -51.93 -0.31 0.44 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.18 5.15 -51.93 -0.27 0.91 16 35 H 0.09 1.65 6.65 -51.93 -0.35 1.30 16 36 H 0.03 0.70 6.32 -51.93 -0.33 0.38 16 37 H 0.05 1.01 7.49 -51.93 -0.39 0.62 16 38 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.04 0.90 8.05 -51.93 -0.42 0.48 16 40 H 0.11 3.10 6.28 -51.93 -0.33 2.78 16 41 H 0.11 3.08 6.29 -51.93 -0.33 2.75 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 297.52 15.07 4.48 4.48 Total: -1.00 -28.59 297.52 -10.71 -39.30 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.63 Total: 4.02 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: -2.38 Total: -29.81 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: -1.17 Total: -34.61 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.59 -10.71 -39.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707188581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.546 kcal (2) G-P(sol) polarization free energy of solvation -28.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds