Wall clock time and date at job start Mon Mar 30 2020 06:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.51460 * 111.54230 * 2 1 4 4 C 1.53778 * 105.99785 * 54.84331 * 3 2 1 5 5 C 1.52378 * 111.60166 * 57.66015 * 4 3 2 6 6 C 1.53949 * 112.55435 * 306.17485 * 5 4 3 7 7 C 1.51827 * 106.24280 * 56.80709 * 6 5 4 8 8 H 1.08999 * 113.49737 * 61.00895 * 7 6 5 9 9 C 1.50432 * 124.10110 * 206.52159 * 7 6 5 10 10 N 1.43574 * 112.05384 * 212.21276 * 2 1 3 11 11 C 1.46903 * 110.99890 * 36.41821 * 10 2 1 12 12 C 1.52995 * 109.47493 * 170.00038 * 11 10 2 13 13 C 1.50707 * 115.54560 * 34.33240 * 12 11 10 14 14 H 1.07993 * 119.99812 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99733 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99974 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99943 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47145 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47402 * 120.00103 * 17 15 13 20 20 H 1.48502 * 109.46780 * 240.00034 * 17 15 13 21 21 C 1.52998 * 117.50059 * 248.62592 * 12 11 10 22 22 C 1.52999 * 60.00086 * 252.50595 * 21 12 11 23 23 H 1.08999 * 109.47099 * 216.85237 * 1 2 3 24 24 H 1.08999 * 109.47111 * 96.85711 * 1 2 3 25 25 H 1.09000 * 109.47383 * 336.85404 * 1 2 3 26 26 H 1.09001 * 110.18423 * 175.13317 * 3 2 1 27 27 H 1.08998 * 110.18177 * 297.01050 * 3 2 1 28 28 H 1.08997 * 109.46371 * 296.97359 * 4 3 2 29 29 H 1.09000 * 108.90772 * 177.97493 * 4 3 2 30 30 H 1.08994 * 108.86190 * 185.38486 * 5 4 3 31 31 H 1.08999 * 108.86704 * 66.96739 * 5 4 3 32 32 H 1.09001 * 110.09342 * 297.62410 * 6 5 4 33 33 H 1.09005 * 110.18637 * 176.04192 * 6 5 4 34 34 H 1.09000 * 113.94623 * 24.35966 * 9 7 6 35 35 H 1.09005 * 113.94337 * 252.40468 * 9 7 6 36 36 H 1.08999 * 109.47253 * 290.00975 * 11 10 2 37 37 H 1.09004 * 109.47089 * 49.99844 * 11 10 2 38 38 H 0.97001 * 119.99833 * 179.97438 * 16 15 13 39 39 H 1.08999 * 117.49870 * 359.97438 * 21 12 11 40 40 H 1.09003 * 117.49831 * 145.02051 * 21 12 11 41 41 H 1.08996 * 117.50269 * 252.51263 * 22 21 12 42 42 H 1.09004 * 117.49642 * 107.48184 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0861 1.4088 0.0000 4 6 1.4500 2.1156 1.2086 5 6 1.7489 1.3806 2.5095 6 6 1.3509 -0.1055 2.4529 7 6 2.0980 -0.7006 1.2727 8 1 3.1820 -0.6385 1.3685 9 6 1.6267 -1.8976 0.4929 10 7 2.0691 -1.1259 -0.7093 11 6 1.2438 -1.4552 -1.8792 12 6 1.9727 -2.4858 -2.7437 13 6 2.8073 -3.4908 -1.9921 14 1 2.8602 -3.4505 -0.9143 15 6 3.5039 -4.4611 -2.6809 16 7 3.4405 -4.5093 -3.9937 17 14 4.5377 -5.7073 -1.7493 18 1 4.4427 -5.4387 -0.2920 19 1 4.0386 -7.0765 -2.0344 20 1 5.9542 -5.5968 -2.1813 21 6 2.4805 -2.0275 -4.1122 22 6 1.2721 -2.9612 -4.0181 23 1 -0.3633 -0.8223 0.6163 24 1 -0.3633 -0.1227 -1.0203 25 1 -0.3634 0.9449 0.4039 26 1 3.1724 1.3843 0.0868 27 1 1.7920 1.9292 -0.9115 28 1 0.3699 2.1678 1.0717 29 1 1.8475 3.1283 1.2749 30 1 1.2011 1.8615 3.3198 31 1 2.8165 1.4519 2.7174 32 1 0.2756 -0.1998 2.3015 33 1 1.6444 -0.6089 3.3742 34 1 0.5503 -2.0617 0.5419 35 1 2.2074 -2.8017 0.6764 36 1 0.2912 -1.8679 -1.5473 37 1 1.0648 -0.5525 -2.4633 38 1 3.9309 -5.1917 -4.4782 39 1 2.2949 -0.9919 -4.3969 40 1 3.4185 -2.4528 -4.4693 41 1 1.4151 -4.0007 -4.3131 42 1 0.2918 -2.5397 -4.2405 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707188581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:26 Heat of formation + Delta-G solvation = 83.263374 kcal Electronic energy + Delta-G solvation = -19631.190547 eV Core-core repulsion = 16999.924203 eV Total energy + Delta-G solvation = -2631.266344 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.06744 -38.49847 -36.44235 -33.63999 -32.29144 -30.48306 -29.16457 -27.65657 -26.53161 -25.12945 -22.65527 -22.02661 -21.36254 -20.72235 -18.92268 -17.84498 -17.20681 -16.60988 -16.54594 -15.88062 -15.37541 -15.14359 -14.85642 -14.44111 -13.93035 -13.69717 -13.48109 -13.01134 -12.99129 -12.89189 -12.70255 -12.45052 -12.42724 -12.19111 -12.09289 -11.99204 -11.93883 -11.56477 -11.25310 -11.17654 -10.99569 -10.70454 -10.20304 -10.14177 -9.92482 -9.45354 -7.94864 -6.02700 1.39172 1.41905 1.52727 2.45650 2.92719 3.11601 3.53466 3.82814 3.91052 4.09336 4.14914 4.20011 4.31541 4.39959 4.42279 4.51868 4.54766 4.64080 4.72811 4.74783 4.83869 4.87640 4.93215 4.97139 5.02498 5.08205 5.12490 5.22727 5.26624 5.27113 5.31657 5.39607 5.42658 5.45428 5.48714 5.63955 5.72901 5.81951 6.00411 6.20277 6.47098 6.60407 7.00764 7.53244 9.00246 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028479 B = 0.006993 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.939509 B = 4003.239145 C = 4592.266294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.022 3.978 3 C -0.088 4.088 4 C -0.111 4.111 5 C -0.112 4.112 6 C -0.100 4.100 7 C -0.111 4.111 8 H 0.084 0.916 9 C 0.005 3.995 10 N -0.446 5.446 11 C 0.076 3.924 12 C 0.018 3.982 13 C -0.466 4.466 14 H 0.071 0.929 15 C 0.001 3.999 16 N -0.909 5.909 17 Si 0.953 3.047 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.288 1.288 21 C -0.191 4.191 22 C -0.192 4.192 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.089 0.911 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.252 0.748 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.428 11.523 12.935 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.069 4.069 3 C -0.126 4.126 4 C -0.148 4.148 5 C -0.149 4.149 6 C -0.138 4.138 7 C -0.130 4.130 8 H 0.103 0.897 9 C -0.122 4.122 10 N -0.167 5.167 11 C -0.052 4.052 12 C 0.018 3.982 13 C -0.504 4.504 14 H 0.089 0.911 15 C -0.196 4.196 16 N -0.549 5.549 17 Si 0.780 3.220 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.215 1.215 21 C -0.229 4.229 22 C -0.231 4.231 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.644 11.405 12.498 17.836 hybrid contribution 0.067 -1.100 -0.473 1.200 sum -5.577 10.305 12.024 16.789 Atomic orbital electron populations 1.22649 0.94393 1.04056 1.02129 1.22512 0.94361 0.94368 0.95648 1.21208 0.99701 0.92972 0.98748 1.21577 1.01248 0.98797 0.93215 1.21446 1.01545 0.94409 0.97512 1.21452 1.00199 0.95535 0.96623 1.22674 0.99850 0.95678 0.94772 0.89728 1.23824 0.99899 0.97147 0.91370 1.69508 1.42950 1.03705 1.00490 1.21969 0.94020 0.95983 0.93227 1.19156 0.97580 0.95607 0.85896 1.21069 1.25385 1.10224 0.93674 0.91143 1.25779 0.98304 0.99795 0.95731 1.70208 1.43092 1.34612 1.07026 0.85571 0.78301 0.78916 0.79227 1.19028 1.21008 1.21453 1.22665 0.98944 0.94787 1.06553 1.22706 0.92995 0.99745 1.07638 0.91008 0.93071 0.89223 0.92474 0.93096 0.90606 0.90807 0.90241 0.92660 0.90530 0.91161 0.89581 0.92221 0.94030 0.93210 0.93810 0.92724 0.90508 0.90078 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.32 6.53 71.98 0.47 -3.85 16 2 C 0.02 0.65 1.52 -7.76 -0.01 0.64 16 3 C -0.09 -2.26 5.76 30.35 0.17 -2.08 16 4 C -0.11 -2.00 5.53 30.65 0.17 -1.83 16 5 C -0.11 -1.90 5.77 30.71 0.18 -1.73 16 6 C -0.10 -2.00 5.87 30.53 0.18 -1.82 16 7 C -0.11 -3.10 3.63 -10.81 -0.04 -3.14 16 8 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 9 C 0.01 0.18 6.28 72.53 0.46 0.64 16 10 N -0.45 -17.42 5.63 ******* -6.08 -23.50 16 11 C 0.08 3.22 3.87 86.30 0.33 3.55 16 12 C 0.02 0.95 2.52 -52.93 -0.13 0.81 16 13 C -0.47 -26.00 8.63 25.60 0.22 -25.78 16 14 H 0.07 3.84 5.00 -2.91 -0.01 3.83 16 15 C 0.00 0.06 5.28 84.65 0.45 0.51 16 16 N -0.91 -53.55 8.59 21.45 0.18 -53.36 16 17 Si 0.95 45.20 29.54 68.60 2.03 47.22 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 19 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 C -0.19 -10.20 9.31 30.59 0.28 -9.92 16 22 C -0.19 -10.02 9.38 30.59 0.29 -9.74 16 23 H 0.07 1.69 4.84 -2.39 -0.01 1.68 16 24 H 0.05 1.40 6.03 -2.39 -0.01 1.39 16 25 H 0.09 1.76 5.26 -2.39 -0.01 1.74 16 26 H 0.06 1.61 8.11 -2.39 -0.02 1.59 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.23 5.76 -2.39 -0.01 1.21 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.41 6.03 -2.39 -0.01 1.39 16 33 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.09 2.68 5.15 -2.39 -0.01 2.67 16 35 H 0.06 2.32 6.65 -2.38 -0.02 2.30 16 36 H 0.04 1.67 6.32 -2.39 -0.02 1.65 16 37 H 0.05 2.04 7.49 -2.38 -0.02 2.02 16 38 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 39 H 0.05 2.65 8.05 -2.39 -0.02 2.63 16 40 H 0.08 4.58 6.28 -2.39 -0.01 4.56 16 41 H 0.08 4.70 6.29 -2.39 -0.02 4.68 16 42 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -62.39 297.52 0.15 -62.24 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 1.00 Total: 21.12 kcal Atomic # 6 Polarization: -56.73 SS G_CDS: 3.02 Total: -53.72 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -5.89 Total: -76.86 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -62.39 0.15 -62.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707188581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.508 kcal (2) G-P(sol) polarization free energy of solvation -62.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds